Wall clock time and date at job start Tue Mar 31 2020 14:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35996 * 116.99991 * 2 1 4 4 C 1.38562 * 120.07150 * 359.97438 * 3 2 1 5 5 C 1.38244 * 119.99905 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.92757 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47597 * 89.99508 * 6 5 4 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28510 * 356.68670 * 10 8 7 12 12 C 1.38223 * 120.09723 * 180.28291 * 11 10 8 13 13 C 1.38826 * 120.67197 * 359.69417 * 12 11 10 14 14 C 1.37607 * 120.57000 * 0.02562 * 13 12 11 15 15 C 1.40702 * 119.88222 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32820 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99743 * 145.79457 * 16 15 14 18 18 C 1.40273 * 119.99861 * 325.79822 * 16 15 14 19 19 N 1.30629 * 119.99711 * 340.74144 * 18 16 15 20 20 Si 1.86800 * 120.00012 * 160.74702 * 18 16 15 21 21 H 1.48505 * 109.46791 * 269.99431 * 20 18 16 22 22 H 1.48496 * 109.47300 * 29.99461 * 20 18 16 23 23 H 1.48496 * 109.47010 * 149.99877 * 20 18 16 24 24 C 1.38255 * 120.14818 * 0.26747 * 5 4 3 25 25 C 1.38245 * 120.14360 * 359.46064 * 24 5 4 26 26 C 1.38573 * 119.99928 * 0.54098 * 25 24 5 27 27 O 1.35987 * 120.07131 * 179.70729 * 26 25 24 28 28 H 1.08999 * 109.46636 * 60.00553 * 1 2 3 29 29 H 1.08998 * 109.46762 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47301 * 300.00452 * 1 2 3 31 31 H 1.07994 * 120.00212 * 0.02562 * 4 3 2 32 32 H 1.09004 * 109.46984 * 329.99404 * 6 5 4 33 33 H 1.09005 * 109.47130 * 209.99704 * 6 5 4 34 34 H 0.96994 * 119.99831 * 359.97438 * 7 6 5 35 35 H 1.08005 * 119.95480 * 359.97438 * 11 10 8 36 36 H 1.07993 * 119.66771 * 179.71616 * 12 11 10 37 37 H 1.08002 * 119.71786 * 180.02562 * 13 12 11 38 38 H 1.07995 * 120.05544 * 180.02562 * 14 13 12 39 39 H 0.97003 * 120.00596 * 354.83519 * 19 18 16 40 40 H 1.07996 * 119.92898 * 179.70850 * 24 5 4 41 41 H 1.08003 * 120.00330 * 180.25042 * 25 24 5 42 42 H 0.96696 * 114.00025 * 270.01736 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9224 3.6057 0.0000 6 6 1.1016 4.8696 0.0000 7 7 0.8350 5.2788 1.3811 8 6 0.1136 6.3903 1.6273 9 8 -0.3164 7.0533 0.7029 10 6 -0.1543 6.8025 3.0173 11 6 0.2758 6.0116 4.0794 12 6 0.0175 6.3988 5.3809 13 6 -0.6650 7.5781 5.6467 14 6 -1.0975 8.3835 4.6182 15 6 -0.8483 8.0116 3.2843 16 6 -1.2874 8.8289 2.2240 17 1 -0.6997 8.9039 1.3210 18 6 -2.4878 9.5451 2.3412 19 7 -3.3764 9.1893 3.2301 20 14 -2.8155 11.0075 1.2261 21 1 -2.3039 12.2446 1.8690 22 1 -2.1263 10.8035 -0.0733 23 1 -4.2769 11.1370 0.9964 24 6 3.3029 3.6799 -0.0045 25 6 4.0603 2.5234 0.0017 26 6 3.4360 1.2863 0.0011 27 8 4.1796 0.1478 0.0012 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2147 2.3196 -0.0005 32 1 0.1575 4.6897 -0.5143 33 1 1.6504 5.6592 -0.5134 34 1 1.1776 4.7498 2.1184 35 1 0.8077 5.0917 3.8860 36 1 0.3502 5.7778 6.1994 37 1 -0.8582 7.8660 6.6696 38 1 -1.6273 9.2993 4.8345 39 1 -3.2406 8.3866 3.7574 40 1 3.7907 4.6434 -0.0088 41 1 5.1386 2.5840 0.0022 42 1 4.3953 -0.1812 -0.8822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362126877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:22 Heat of formation + Delta-G solvation = -96.450862 kcal Electronic energy + Delta-G solvation = -26593.753111 eV Core-core repulsion = 22695.903212 eV Total energy + Delta-G solvation = -3897.849900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.55028 -40.76738 -39.03054 -38.73689 -37.89754 -35.98611 -35.24109 -32.36080 -31.50692 -31.26332 -30.80688 -28.52338 -27.34172 -26.42559 -24.06800 -23.40047 -22.89359 -22.45299 -21.25188 -20.02105 -19.63805 -18.63108 -17.96831 -17.53119 -17.07709 -16.82532 -16.53332 -16.20838 -16.07371 -15.80350 -15.69157 -15.46136 -15.14869 -15.05929 -14.67655 -14.45368 -14.01447 -13.96972 -13.59512 -13.25395 -13.08899 -12.93281 -12.84118 -12.68461 -12.49894 -12.29177 -12.10329 -12.04043 -11.94279 -11.59626 -11.45828 -10.95980 -10.44000 -10.05371 -9.87953 -9.61774 -9.50316 -9.19710 -9.09481 -6.46534 0.00334 0.29227 0.39086 0.89911 1.46958 1.62612 1.77610 2.20535 2.23827 2.30194 2.31345 2.73489 2.76710 3.18352 3.51896 3.55486 3.79043 4.02546 4.19085 4.21680 4.25016 4.27860 4.31470 4.42841 4.52101 4.57510 4.62347 4.68877 4.79197 4.84039 4.87409 5.04415 5.13294 5.21561 5.42249 5.48044 5.50955 5.62310 5.65048 5.70545 5.88859 5.96336 6.19730 6.19894 6.32744 6.66343 6.84186 6.84690 6.91228 7.57331 8.04481 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.002831 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.106242 B = 9887.483007 C =10426.250458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.088 3.912 4 C -0.178 4.178 5 C -0.074 4.074 6 C 0.168 3.832 7 N -0.723 5.723 8 C 0.559 3.441 9 O -0.576 6.576 10 C -0.283 4.283 11 C -0.041 4.041 12 C -0.245 4.245 13 C -0.071 4.071 14 C -0.225 4.225 15 C 0.097 3.903 16 C -0.510 4.510 17 H 0.082 0.918 18 C -0.003 4.003 19 N -0.818 5.818 20 Si 1.118 2.882 21 H -0.256 1.256 22 H -0.273 1.273 23 H -0.268 1.268 24 C -0.120 4.120 25 C -0.103 4.103 26 C 0.073 3.927 27 O -0.498 6.498 28 H 0.063 0.937 29 H 0.122 0.878 30 H 0.056 0.944 31 H 0.138 0.862 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.404 0.596 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.090 0.910 39 H 0.283 0.717 40 H 0.143 0.857 41 H 0.161 0.839 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.033 -15.767 -6.162 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.042 3.958 4 C -0.198 4.198 5 C -0.075 4.075 6 C 0.045 3.955 7 N -0.378 5.378 8 C 0.353 3.647 9 O -0.458 6.458 10 C -0.288 4.288 11 C -0.060 4.060 12 C -0.264 4.264 13 C -0.090 4.090 14 C -0.245 4.245 15 C 0.093 3.907 16 C -0.537 4.537 17 H 0.100 0.900 18 C -0.218 4.218 19 N -0.442 5.442 20 Si 0.935 3.065 21 H -0.180 1.180 22 H -0.198 1.198 23 H -0.193 1.193 24 C -0.139 4.139 25 C -0.121 4.121 26 C 0.027 3.973 27 O -0.310 6.310 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.075 0.925 31 H 0.156 0.844 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.241 0.759 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.142 0.858 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.161 0.839 41 H 0.178 0.822 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 9.641 -14.278 -6.519 18.420 hybrid contribution 0.702 -1.363 0.260 1.555 sum 10.342 -15.641 -6.260 19.768 Atomic orbital electron populations 1.23341 0.76791 1.05636 1.01983 1.86112 1.22951 1.25983 1.88647 1.19579 0.92206 0.85023 0.98954 1.21166 1.00726 0.91110 1.06763 1.19587 0.94263 0.93018 1.00612 1.20042 0.98440 0.93415 0.83652 1.45816 1.56205 1.27350 1.08381 1.18405 0.77237 0.79897 0.89184 1.90666 1.52969 1.54870 1.47247 1.19782 1.17700 0.99231 0.92053 1.21123 0.95411 0.97113 0.92363 1.20796 1.09253 1.00027 0.96307 1.21154 0.95368 0.94390 0.98077 1.21218 1.09081 1.01209 0.92976 1.17890 0.89833 0.89863 0.93122 1.21136 1.07617 1.22005 1.02977 0.89994 1.28472 0.92056 1.03249 0.98022 1.70470 1.34136 1.22688 1.16887 0.82984 0.77301 0.71956 0.74221 1.18020 1.19834 1.19256 1.21100 0.92353 0.99435 1.01021 1.21456 1.01755 0.89865 0.99047 1.17977 0.86135 0.87298 1.05880 1.84829 1.71467 1.39562 1.35160 0.91806 0.85968 0.92513 0.84413 0.91998 0.91157 0.75926 0.85164 0.84742 0.85768 0.89196 0.90478 0.83925 0.82150 0.73606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.32 -6.85 10.28 -79.64 -0.82 -7.67 16 3 C 0.09 1.94 6.70 22.57 0.15 2.09 16 4 C -0.18 -3.94 8.69 22.35 0.19 -3.74 16 5 C -0.07 -1.70 5.25 -19.86 -0.10 -1.81 16 6 C 0.17 4.86 5.80 85.63 0.50 5.35 16 7 N -0.72 -24.60 5.50 -470.10 -2.58 -27.19 16 8 C 0.56 25.85 7.73 86.67 0.67 26.52 16 9 O -0.58 -31.20 13.56 -4.06 -0.06 -31.25 16 10 C -0.28 -13.67 5.92 -19.70 -0.12 -13.78 16 11 C -0.04 -1.64 9.53 22.50 0.21 -1.42 16 12 C -0.24 -9.34 10.03 22.41 0.22 -9.12 16 13 C -0.07 -3.01 10.01 22.26 0.22 -2.78 16 14 C -0.23 -11.40 7.87 22.72 0.18 -11.23 16 15 C 0.10 5.29 5.17 -21.11 -0.11 5.18 16 16 C -0.51 -29.36 7.65 23.41 0.18 -29.18 16 17 H 0.08 5.00 5.92 -2.91 -0.02 4.98 16 18 C 0.00 -0.15 5.04 85.37 0.43 0.29 16 19 N -0.82 -45.65 12.57 21.88 0.28 -45.37 16 20 Si 1.12 46.99 29.98 68.60 2.06 49.05 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 24 C -0.12 -2.37 9.69 22.28 0.22 -2.15 16 25 C -0.10 -1.81 9.98 22.35 0.22 -1.59 16 26 C 0.07 1.47 6.72 22.57 0.15 1.62 16 27 O -0.50 -9.03 13.29 -79.54 -1.06 -10.08 16 28 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 29 H 0.12 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 31 H 0.14 2.86 6.30 -2.91 -0.02 2.84 16 32 H 0.06 1.90 8.08 -2.38 -0.02 1.88 16 33 H 0.07 2.09 8.08 -2.38 -0.02 2.07 16 34 H 0.40 11.79 6.51 -92.71 -0.60 11.19 16 35 H 0.13 4.04 6.41 -2.91 -0.02 4.03 16 36 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 37 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.09 4.76 6.94 -2.91 -0.02 4.74 16 39 H 0.28 16.27 6.55 -92.71 -0.61 15.66 16 40 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 41 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.41 3.46 9.06 -74.06 -0.67 2.79 16 Total: -1.00 -72.94 357.65 2.13 -70.82 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.02 Total: 36.10 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 4.33 Total: -34.39 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -2.31 Total: -72.56 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -1.93 Total: -49.01 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.06 Total: 49.05 kcal Total: -72.94 2.13 -70.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362126877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.634 kcal (2) G-P(sol) polarization free energy of solvation -72.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds