Wall clock time and date at job start Tue Mar 31 2020 14:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35897 * 116.99638 * 2 1 4 4 C 1.38754 * 120.06019 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94377 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05767 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.10908 * 359.95712 * 6 5 4 8 8 C 1.50703 * 119.96867 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47165 * 160.00148 * 8 7 6 10 10 O 1.42898 * 109.46998 * 40.00567 * 8 7 6 11 11 C 1.50698 * 109.47393 * 279.99893 * 8 7 6 12 12 O 1.21293 * 119.99453 * 114.99985 * 11 8 7 13 13 N 1.34769 * 120.00401 * 294.72685 * 11 8 7 14 14 C 1.39937 * 120.00356 * 175.36274 * 13 11 8 15 15 C 1.39290 * 119.94770 * 326.49490 * 14 13 11 16 16 C 1.38485 * 120.43008 * 179.76122 * 15 14 13 17 17 C 1.37686 * 120.31873 * 0.51121 * 16 15 14 18 18 C 1.40740 * 119.88827 * 359.74571 * 17 16 15 19 19 C 1.41410 * 120.21212 * 180.02562 * 18 17 16 20 20 H 1.07993 * 119.99623 * 151.37321 * 19 18 17 21 21 C 1.39925 * 119.99927 * 331.36857 * 19 18 17 22 22 N 1.30833 * 120.00240 * 166.74871 * 21 19 18 23 23 Si 1.86803 * 120.00282 * 346.75155 * 21 19 18 24 24 H 1.48503 * 109.47117 * 95.29984 * 23 21 19 25 25 H 1.48497 * 109.47114 * 215.30559 * 23 21 19 26 26 H 1.48507 * 109.46728 * 335.30291 * 23 21 19 27 27 C 1.38241 * 119.94625 * 146.76769 * 14 13 11 28 28 C 1.38166 * 120.05692 * 0.27472 * 7 6 5 29 29 H 1.08995 * 109.47175 * 60.00285 * 1 2 3 30 30 H 1.08999 * 109.47016 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47342 * 300.00184 * 1 2 3 32 32 H 1.07996 * 120.02507 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.97170 * 180.02562 * 5 4 3 34 34 H 1.08001 * 119.94256 * 179.97438 * 6 5 4 35 35 H 0.96701 * 114.00144 * 299.99305 * 10 8 7 36 36 H 0.97000 * 119.99946 * 355.36903 * 13 11 8 37 37 H 1.08006 * 119.78346 * 0.02562 * 15 14 13 38 38 H 1.07999 * 119.84149 * 180.25624 * 16 15 14 39 39 H 1.08003 * 120.05493 * 179.76415 * 17 16 15 40 40 H 0.96995 * 120.00345 * 179.97438 * 22 21 19 41 41 H 1.08003 * 120.16089 * 359.95468 * 27 14 13 42 42 H 1.08008 * 120.02426 * 179.74154 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 4.0559 2.5171 -0.0007 8 6 5.5608 2.5982 -0.0019 9 1 5.9758 1.6539 0.3504 10 8 5.9814 3.6554 0.8626 11 6 6.0481 2.8699 -1.4018 12 8 6.6133 3.9126 -1.6554 13 7 5.8609 1.9519 -2.3706 14 6 6.2255 2.2427 -3.6899 15 6 6.1105 3.5443 -4.1724 16 6 6.4730 3.8442 -5.4748 17 6 6.9417 2.8558 -6.3110 18 6 7.0583 1.5350 -5.8391 19 6 7.5393 0.5146 -6.6918 20 1 8.0580 -0.3366 -6.2761 21 6 7.3432 0.6077 -8.0741 22 7 7.9998 -0.1839 -8.8829 23 14 6.1440 1.8624 -8.7650 24 1 6.8818 3.0921 -9.1508 25 1 5.4679 1.2954 -9.9594 26 1 5.1290 2.1970 -7.7338 27 6 6.6939 1.2365 -4.5142 28 6 3.4310 1.2848 -0.0050 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 0.2128 2.3203 -0.0005 33 1 1.3340 4.5114 -0.0011 34 1 3.7922 4.6381 -0.0024 35 1 5.6486 4.5271 0.6088 36 1 5.4734 1.0896 -2.1533 37 1 5.7401 4.3256 -3.5251 38 1 6.3838 4.8574 -5.8378 39 1 7.2196 3.0937 -7.3272 40 1 7.8636 -0.1196 -9.8410 41 1 6.7800 0.2263 -4.1421 42 1 4.0207 0.3799 -0.0085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362583327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:15 Heat of formation + Delta-G solvation = -70.847541 kcal Electronic energy + Delta-G solvation = -26841.411444 eV Core-core repulsion = 22944.671787 eV Total energy + Delta-G solvation = -3896.739656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.82073 -39.93758 -38.27717 -37.39028 -36.18433 -34.54708 -33.29859 -31.99597 -30.58910 -30.31806 -29.09822 -27.73614 -26.67202 -25.13433 -22.97393 -22.48554 -21.41225 -21.15454 -19.89609 -18.58708 -18.06807 -17.61518 -16.72022 -16.32772 -16.16733 -16.04286 -16.01639 -15.54716 -15.07677 -14.56317 -14.29067 -14.20721 -13.90926 -13.59405 -13.48001 -13.06902 -12.75626 -12.67665 -12.63679 -12.16406 -12.07609 -12.00768 -11.72126 -11.44578 -11.36235 -11.07838 -10.91365 -10.75040 -10.63838 -10.16488 -9.74905 -9.62825 -9.40366 -9.14900 -8.89661 -8.50001 -7.70448 -7.17404 -6.93095 -4.51669 0.90385 1.14537 2.22963 2.61686 2.88171 3.00298 3.12501 3.22535 3.26602 3.32864 3.47557 3.98518 4.20001 4.31068 4.45193 4.51387 4.70379 4.73869 4.79007 4.81650 4.90252 4.96938 5.13500 5.18818 5.34849 5.41082 5.64976 5.94147 6.00002 6.08680 6.18740 6.30388 6.34446 6.37005 6.49008 6.69459 6.75238 7.06521 7.09494 7.26104 7.28952 7.44845 7.63021 7.82546 7.84675 8.08502 8.32212 8.41998 8.62117 8.79586 10.09467 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.003262 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.548025 B = 8581.111783 C = 9620.329829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.131 3.869 4 C -0.204 4.204 5 C -0.074 4.074 6 C -0.141 4.141 7 C -0.077 4.077 8 C 0.136 3.864 9 H 0.134 0.866 10 O -0.528 6.528 11 C 0.485 3.515 12 O -0.511 6.511 13 N -0.659 5.659 14 C 0.166 3.834 15 C -0.230 4.230 16 C -0.068 4.068 17 C -0.242 4.242 18 C 0.106 3.894 19 C -0.446 4.446 20 H 0.090 0.910 21 C 0.082 3.918 22 N -0.813 5.813 23 Si 0.914 3.086 24 H -0.272 1.272 25 H -0.294 1.294 26 H -0.241 1.241 27 C -0.230 4.230 28 C -0.138 4.138 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.383 0.617 36 H 0.403 0.597 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.285 0.715 41 H 0.104 0.896 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.219 2.770 16.886 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.086 3.914 4 C -0.223 4.223 5 C -0.092 4.092 6 C -0.159 4.159 7 C -0.078 4.078 8 C 0.073 3.927 9 H 0.152 0.848 10 O -0.333 6.333 11 C 0.270 3.730 12 O -0.385 6.385 13 N -0.304 5.304 14 C 0.074 3.926 15 C -0.251 4.251 16 C -0.087 4.087 17 C -0.261 4.261 18 C 0.102 3.898 19 C -0.474 4.474 20 H 0.108 0.892 21 C -0.136 4.136 22 N -0.438 5.438 23 Si 0.742 3.258 24 H -0.198 1.198 25 H -0.222 1.222 26 H -0.164 1.164 27 C -0.252 4.252 28 C -0.157 4.157 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.233 0.767 36 H 0.238 0.762 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.355 2.719 16.828 22.285 hybrid contribution -1.177 0.551 -0.749 1.500 sum -15.531 3.270 16.078 22.593 Atomic orbital electron populations 1.23078 0.78217 1.04124 1.01375 1.86087 1.21510 1.26670 1.88572 1.18917 0.92122 0.84321 0.96022 1.21289 1.00177 0.92405 1.08380 1.20890 0.94234 0.97211 0.96853 1.20812 0.94054 0.97901 1.03172 1.19984 0.94900 0.93382 0.99533 1.20677 0.89660 0.93904 0.88447 0.84832 1.86620 1.76435 1.18864 1.51387 1.21240 0.79800 0.84827 0.87086 1.90746 1.40286 1.25625 1.81883 1.43475 1.61748 1.18131 1.07078 1.17505 0.98555 0.94852 0.81651 1.20295 1.13509 0.94995 0.96265 1.20465 0.97421 0.97382 0.93389 1.21000 1.12037 0.93672 0.99387 1.17482 0.88651 0.91937 0.91714 1.19462 1.31250 1.06234 0.90497 0.89165 1.26154 0.94936 0.95541 0.96944 1.69658 1.34028 1.34767 1.05327 0.86289 0.81876 0.79519 0.78109 1.19834 1.22225 1.16405 1.20698 1.11260 0.97018 0.96196 1.20192 0.91712 0.97782 1.06018 0.92483 0.88087 0.92669 0.85296 0.85389 0.85714 0.76719 0.76227 0.87582 0.88454 0.88347 0.90460 0.87788 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.18 10.50 -19.42 -0.20 -3.38 16 3 C 0.13 1.39 6.69 -39.22 -0.26 1.13 16 4 C -0.20 -1.90 9.04 -39.43 -0.36 -2.25 16 5 C -0.07 -0.69 10.04 -39.61 -0.40 -1.08 16 6 C -0.14 -1.47 9.31 -39.56 -0.37 -1.84 16 7 C -0.08 -0.85 4.92 -104.64 -0.52 -1.37 16 8 C 0.14 1.63 3.62 -29.03 -0.11 1.52 16 9 H 0.13 1.32 8.01 -51.93 -0.42 0.90 16 10 O -0.53 -6.53 12.84 -55.09 -0.71 -7.24 16 11 C 0.49 7.80 6.88 -10.99 -0.08 7.72 16 12 O -0.51 -10.09 14.00 -14.31 -0.20 -10.29 16 13 N -0.66 -10.99 5.29 -9.91 -0.05 -11.05 16 14 C 0.17 3.54 6.27 -83.77 -0.52 3.02 16 15 C -0.23 -5.12 8.66 -39.10 -0.34 -5.46 16 16 C -0.07 -1.54 10.02 -39.69 -0.40 -1.93 16 17 C -0.24 -5.94 6.92 -38.84 -0.27 -6.21 16 18 C 0.11 2.69 5.19 -106.85 -0.55 2.14 16 19 C -0.45 -12.05 9.61 -37.74 -0.36 -12.42 16 20 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 21 C 0.08 2.17 5.47 -17.35 -0.09 2.08 16 22 N -0.81 -21.78 13.93 55.55 0.77 -21.01 16 23 Si 0.91 20.95 24.37 -169.99 -4.14 16.81 16 24 H -0.27 -6.08 6.77 56.52 0.38 -5.70 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.24 -5.62 6.48 56.52 0.37 -5.25 16 27 C -0.23 -5.30 9.70 -38.68 -0.38 -5.67 16 28 C -0.14 -1.47 9.61 -39.43 -0.38 -1.85 16 29 H 0.06 0.32 7.66 -51.93 -0.40 -0.07 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 32 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 1.14 6.78 -52.49 -0.36 0.79 16 35 H 0.38 3.92 7.25 45.56 0.33 4.25 16 36 H 0.40 5.43 8.81 -40.82 -0.36 5.07 16 37 H 0.11 2.30 6.40 -52.48 -0.34 1.97 16 38 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 39 H 0.10 2.40 4.20 -52.48 -0.22 2.18 16 40 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 41 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 42 H 0.14 1.22 8.04 -52.48 -0.42 0.80 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -32.57 352.80 -7.81 -40.38 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -4.21 Total: 11.76 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -4.38 Total: -21.31 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.72 Total: -32.05 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -1.11 Total: -20.91 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.14 Total: 16.81 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.57 -7.81 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362583327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.469 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds