Wall clock time and date at job start Tue Mar 31 2020 14:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35991 * 117.00236 * 2 1 4 4 C 1.38565 * 120.07149 * 359.97438 * 3 2 1 5 5 C 1.38249 * 120.00098 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.14321 * 0.02562 * 5 4 3 7 7 C 1.38249 * 120.14622 * 359.97438 * 6 5 4 8 8 C 1.38555 * 120.00043 * 359.72287 * 7 6 5 9 9 O 1.35996 * 120.07712 * 180.27440 * 8 7 6 10 10 C 1.42905 * 116.99778 * 0.27958 * 9 8 7 11 11 C 1.50698 * 109.47018 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00100 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99435 * 180.02562 * 11 10 9 14 14 C 1.39944 * 119.99549 * 174.89236 * 13 11 10 15 15 C 1.39290 * 119.94507 * 145.78472 * 14 13 11 16 16 C 1.38487 * 120.42378 * 180.02562 * 15 14 13 17 17 C 1.37679 * 120.32702 * 359.97093 * 16 15 14 18 18 C 1.40747 * 119.88171 * 0.02820 * 17 16 15 19 19 C 1.41406 * 120.20634 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99868 * 205.16941 * 19 18 17 21 21 C 1.39933 * 119.99967 * 25.17260 * 19 18 17 22 22 N 1.30824 * 120.00572 * 16.80387 * 21 19 18 23 23 Si 1.86809 * 119.99845 * 196.79952 * 21 19 18 24 24 H 1.48502 * 109.46809 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46974 * 119.99684 * 23 21 19 26 26 H 1.48495 * 109.47267 * 239.99914 * 23 21 19 27 27 C 1.38245 * 119.94706 * 325.50452 * 14 13 11 28 28 H 1.09002 * 109.47052 * 300.00245 * 1 2 3 29 29 H 1.09005 * 109.47162 * 59.99937 * 1 2 3 30 30 H 1.09002 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.07993 * 120.00429 * 359.97438 * 4 3 2 32 32 H 1.07991 * 119.92816 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.92626 * 179.97438 * 6 5 4 34 34 H 1.08004 * 119.99547 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47129 * 300.00195 * 10 9 8 36 36 H 1.09003 * 109.47043 * 59.99656 * 10 9 8 37 37 H 0.96993 * 120.00491 * 354.88883 * 13 11 10 38 38 H 1.07997 * 119.78823 * 359.97155 * 15 14 13 39 39 H 1.08007 * 119.83746 * 179.97438 * 16 15 14 40 40 H 1.07997 * 120.05881 * 179.97438 * 17 16 15 41 41 H 0.96994 * 120.00392 * 179.97438 * 22 21 19 42 42 H 1.08000 * 120.15738 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 -0.0005 5 6 1.9224 3.6057 0.0000 6 6 3.3030 3.6798 0.0005 7 6 4.0603 2.5232 0.0011 8 6 3.4360 1.2863 0.0069 9 8 4.1795 0.1476 0.0131 10 6 5.6003 0.3005 0.0194 11 6 6.2517 -1.0584 0.0263 12 8 5.5668 -2.0593 0.0253 13 7 7.5956 -1.1613 0.0335 14 6 8.2004 -2.4181 0.1478 15 6 9.3998 -2.6752 -0.5122 16 6 10.0066 -3.9155 -0.4064 17 6 9.4306 -4.9087 0.3535 18 6 8.2188 -4.6634 1.0260 19 6 7.6209 -5.6787 1.8079 20 1 6.5553 -5.6680 1.9835 21 6 8.4099 -6.6972 2.3540 22 7 9.7075 -6.5497 2.4308 23 14 7.6102 -8.2677 2.9736 24 1 6.1408 -8.1868 2.7744 25 1 8.1484 -9.4281 2.2193 26 1 7.9057 -8.4367 4.4191 27 6 7.6094 -3.4007 0.9202 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2147 2.3197 -0.0014 32 1 1.3343 4.5114 -0.0008 33 1 3.7909 4.6433 0.0005 34 1 5.1386 2.5839 0.0019 35 1 5.9107 0.8482 -0.8704 36 1 5.9023 0.8524 0.9095 37 1 8.1435 -0.3644 -0.0406 38 1 9.8590 -1.9025 -1.1109 39 1 10.9363 -4.1047 -0.9225 40 1 9.9074 -5.8745 0.4327 41 1 10.2543 -7.2555 2.8097 42 1 6.6816 -3.2009 1.4355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412117745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:35 Heat of formation + Delta-G solvation = -52.463841 kcal Electronic energy + Delta-G solvation = -26131.439749 eV Core-core repulsion = 22235.497270 eV Total energy + Delta-G solvation = -3895.942479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.77295 -39.72946 -38.45413 -37.22690 -36.75351 -34.45819 -33.05749 -30.69096 -30.55640 -29.81433 -29.10758 -27.38431 -27.11882 -25.28062 -22.77361 -22.48981 -21.44406 -20.83022 -19.66269 -18.88304 -17.87712 -17.39642 -16.90954 -16.48065 -16.19149 -15.71167 -15.52611 -15.14185 -14.97421 -14.82171 -14.60204 -14.28154 -14.14021 -13.52262 -13.12982 -12.89292 -12.70190 -12.67634 -12.35840 -12.12129 -11.65675 -11.52460 -11.35799 -11.33290 -11.27860 -11.11929 -11.08450 -10.90130 -10.43568 -10.14380 -9.65976 -9.41502 -9.06750 -8.99827 -8.97572 -8.00321 -7.44265 -6.93143 -6.70172 -4.31937 1.03481 1.21910 2.50590 2.68535 2.83450 3.11953 3.11966 3.18918 3.20411 3.33907 3.50010 3.82806 3.99299 4.54147 4.61892 4.65769 4.71242 4.84440 4.94641 4.95636 4.97296 5.00017 5.13172 5.18531 5.33506 5.39564 5.72972 5.92480 6.01050 6.23396 6.24228 6.39010 6.42027 6.71213 6.85889 7.01882 7.04572 7.08552 7.26714 7.40754 7.56671 7.72172 7.96485 8.11306 8.14873 8.25912 8.60902 8.71710 8.95525 8.99595 10.23249 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016066 B = 0.002550 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.399190 B =10977.805225 C =12399.529883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.300 6.300 3 C 0.102 3.898 4 C -0.175 4.175 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.177 4.177 8 C 0.104 3.896 9 O -0.275 6.275 10 C 0.042 3.958 11 C 0.505 3.495 12 O -0.489 6.489 13 N -0.665 5.665 14 C 0.152 3.848 15 C -0.260 4.260 16 C -0.092 4.092 17 C -0.171 4.171 18 C 0.120 3.880 19 C -0.456 4.456 20 H 0.079 0.921 21 C 0.075 3.925 22 N -0.795 5.795 23 Si 0.908 3.092 24 H -0.259 1.259 25 H -0.272 1.272 26 H -0.275 1.275 27 C -0.210 4.210 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.279 0.721 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.276 18.927 -3.911 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.213 6.213 3 C 0.057 3.943 4 C -0.194 4.194 5 C -0.139 4.139 6 C -0.136 4.136 7 C -0.195 4.195 8 C 0.058 3.942 9 O -0.187 6.187 10 C -0.037 4.037 11 C 0.289 3.711 12 O -0.361 6.361 13 N -0.311 5.311 14 C 0.061 3.939 15 C -0.282 4.282 16 C -0.111 4.111 17 C -0.191 4.191 18 C 0.117 3.883 19 C -0.486 4.486 20 H 0.097 0.903 21 C -0.142 4.142 22 N -0.421 5.421 23 Si 0.732 3.268 24 H -0.183 1.183 25 H -0.197 1.197 26 H -0.200 1.200 27 C -0.231 4.231 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.090 0.910 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.607 17.685 -3.799 21.492 hybrid contribution 0.018 0.161 0.288 0.330 sum -11.589 17.846 -3.511 21.566 Atomic orbital electron populations 1.23081 0.78659 1.04212 1.00902 1.86287 1.20904 1.25530 1.88605 1.18308 0.89141 0.85493 1.01401 1.21071 0.99946 0.91512 1.06826 1.20837 0.94601 0.96916 1.01563 1.20847 0.93737 0.97785 1.01222 1.21123 1.00577 0.91073 1.06770 1.18363 0.88475 0.86100 1.01282 1.86305 1.16497 1.27423 1.88494 1.22509 0.80687 0.97033 1.03464 1.19927 0.82762 0.90171 0.78272 1.90819 1.62352 1.37554 1.45378 1.43244 1.05468 1.09165 1.73199 1.17387 0.94115 0.84089 0.98348 1.20020 0.99575 0.98630 1.09961 1.20462 0.98140 0.93388 0.99150 1.21359 0.98752 0.99104 0.99836 1.17495 0.91026 0.90466 0.89362 1.19630 0.95685 1.06130 1.27166 0.90254 1.25908 0.94597 0.99545 0.94136 1.69828 1.05740 1.32686 1.33834 0.86266 0.80896 0.81035 0.78583 1.18299 1.19712 1.20028 1.20992 1.03332 0.93623 1.05177 0.92792 0.92831 0.88044 0.84802 0.85670 0.85551 0.84635 0.89223 0.89039 0.76724 0.89224 0.88979 0.86266 0.90995 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.25 10.28 -34.21 -0.35 -4.60 16 3 C 0.10 1.34 6.70 -39.12 -0.26 1.08 16 4 C -0.17 -1.70 9.04 -39.46 -0.36 -2.06 16 5 C -0.12 -1.02 10.04 -39.57 -0.40 -1.42 16 6 C -0.12 -1.01 10.04 -39.57 -0.40 -1.41 16 7 C -0.18 -1.80 9.04 -39.46 -0.36 -2.16 16 8 C 0.10 1.41 6.70 -39.12 -0.26 1.15 16 9 O -0.28 -4.50 9.45 -47.35 -0.45 -4.94 16 10 C 0.04 0.55 5.22 36.00 0.19 0.74 16 11 C 0.50 9.27 7.63 -10.98 -0.08 9.19 16 12 O -0.49 -11.74 14.25 -14.35 -0.20 -11.95 16 13 N -0.66 -11.69 5.34 -9.91 -0.05 -11.75 16 14 C 0.15 3.46 6.25 -83.76 -0.52 2.94 16 15 C -0.26 -5.73 9.97 -39.10 -0.39 -6.12 16 16 C -0.09 -2.17 10.01 -39.69 -0.40 -2.56 16 17 C -0.17 -4.53 8.69 -38.84 -0.34 -4.87 16 18 C 0.12 3.34 5.57 -106.85 -0.59 2.75 16 19 C -0.46 -12.75 9.05 -37.74 -0.34 -13.09 16 20 H 0.08 2.20 7.90 -52.49 -0.41 1.79 16 21 C 0.08 1.95 5.16 -17.35 -0.09 1.86 16 22 N -0.80 -20.89 10.94 55.55 0.61 -20.28 16 23 Si 0.91 19.38 29.59 -169.99 -5.03 14.35 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 27 C -0.21 -5.54 8.39 -38.69 -0.32 -5.87 16 28 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 29 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 32 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.14 1.05 6.30 -52.48 -0.33 0.72 16 35 H 0.09 0.86 7.65 -51.93 -0.40 0.46 16 36 H 0.09 0.92 7.68 -51.93 -0.40 0.52 16 37 H 0.40 5.09 8.82 -40.82 -0.36 4.73 16 38 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 40 H 0.12 3.23 6.17 -52.49 -0.32 2.91 16 41 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 42 H 0.11 2.91 6.48 -52.49 -0.34 2.57 16 LS Contribution 359.78 15.07 5.42 5.42 Total: -1.00 -34.91 359.78 -8.93 -43.84 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.94 Total: 8.53 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -3.94 Total: -18.63 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.55 Total: -32.02 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -1.00 Total: -21.49 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.91 -8.93 -43.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412117745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.626 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds