Wall clock time and date at job start Tue Mar 31 2020 14:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35672 * 116.99994 * 2 1 4 4 C 1.38920 * 119.68714 * 179.97438 * 3 2 1 5 5 C 1.38373 * 119.11368 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48793 * 0.02562 * 5 4 3 7 7 C 1.38053 * 119.28729 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.58190 * 180.02562 * 7 6 5 9 9 O 1.45198 * 109.46794 * 359.97438 * 8 7 6 10 10 C 1.34237 * 116.99535 * 180.02562 * 9 8 7 11 11 O 1.20820 * 119.99945 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99871 * 180.02562 * 10 9 8 13 13 H 1.09000 * 109.47287 * 59.99160 * 12 10 9 14 14 C 1.50700 * 109.47024 * 299.99768 * 12 10 9 15 15 H 1.08008 * 119.99914 * 324.87758 * 14 12 10 16 16 C 1.37884 * 120.00307 * 144.87564 * 14 12 10 17 17 N 1.31509 * 119.99330 * 5.19112 * 16 14 12 18 18 Si 1.86800 * 120.00017 * 185.19414 * 16 14 12 19 19 H 1.48494 * 109.47259 * 90.00071 * 18 16 14 20 20 H 1.48499 * 109.46692 * 210.00124 * 18 16 14 21 21 H 1.48502 * 109.47122 * 329.99826 * 18 16 14 22 22 C 1.50698 * 109.47299 * 180.02562 * 12 10 9 23 23 C 1.38237 * 120.00010 * 66.00281 * 22 12 10 24 24 C 1.38233 * 119.99689 * 179.81537 * 23 22 12 25 25 C 1.38233 * 120.00055 * 0.39620 * 24 23 22 26 26 C 1.38238 * 120.00146 * 359.85977 * 25 24 23 27 27 C 1.38232 * 119.99764 * 359.95089 * 26 25 24 28 28 N 1.31960 * 120.83398 * 0.27647 * 7 6 5 29 29 H 1.09002 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47361 * 300.00291 * 1 2 3 31 31 H 1.09004 * 109.46682 * 60.00098 * 1 2 3 32 32 H 1.07996 * 120.43974 * 0.04639 * 4 3 2 33 33 H 1.08003 * 120.75601 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.35759 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.46768 * 240.00042 * 8 7 6 36 36 H 1.08998 * 109.46809 * 119.99645 * 8 7 6 37 37 H 0.97005 * 119.99256 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.00122 * 0.02562 * 23 22 12 39 39 H 1.08007 * 119.99857 * 180.23246 * 24 23 22 40 40 H 1.08003 * 120.00010 * 179.83961 * 25 24 23 41 41 H 1.07993 * 119.99723 * 179.97438 * 26 25 24 42 42 H 1.08001 * 120.00025 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5131 0.0011 6 6 3.2505 3.6491 0.0016 7 6 1.8770 3.5096 0.0010 8 6 1.0044 4.7384 0.0010 9 8 1.8404 5.9256 0.0022 10 6 1.2133 7.1124 0.0029 11 8 0.0059 7.1577 0.0020 12 6 2.0152 8.3884 0.0036 13 1 2.6437 8.4230 -0.8863 14 6 2.8839 8.4350 1.2341 15 1 2.5247 8.0208 2.1648 16 6 4.1373 9.0063 1.1720 17 7 4.5348 9.6009 0.0685 18 14 5.2706 8.9354 2.6553 19 1 6.1000 7.7056 2.5862 20 1 6.1542 10.1289 2.6604 21 1 4.4583 8.9156 3.8983 22 6 1.0795 9.5697 0.0049 23 6 0.2692 9.8084 1.0991 24 6 -0.5863 10.8943 1.1018 25 6 -0.6373 11.7367 0.0071 26 6 0.1693 11.4950 -1.0893 27 6 1.0275 10.4114 -1.0904 28 7 1.3186 2.3140 0.0055 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0228 0.3696 0.0002 33 1 5.1254 2.5947 0.0019 34 1 3.6993 4.6314 0.0016 35 1 0.3748 4.7368 0.8907 36 1 0.3756 4.7373 -0.8893 37 1 5.4164 10.0032 0.0249 38 1 0.3068 9.1485 1.9532 39 1 -1.2167 11.0829 1.9583 40 1 -1.3075 12.5836 0.0081 41 1 0.1291 12.1529 -1.9447 42 1 1.6580 10.2227 -1.9468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433436865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:07 Heat of formation + Delta-G solvation = -62.042695 kcal Electronic energy + Delta-G solvation = -26758.069201 eV Core-core repulsion = 22861.711351 eV Total energy + Delta-G solvation = -3896.357850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.70023 -39.76333 -38.29015 -37.88577 -35.73351 -33.78318 -32.75470 -31.31089 -31.10412 -30.02963 -28.25562 -27.46779 -26.34561 -24.10380 -23.01335 -22.29159 -21.69925 -21.24339 -19.58671 -18.24620 -17.21039 -16.77717 -16.43733 -16.14650 -16.02853 -15.84177 -15.62597 -15.41138 -14.57576 -14.31708 -14.22285 -14.03673 -13.68945 -13.57403 -13.04550 -12.72212 -12.49781 -12.39089 -12.20162 -11.98702 -11.76793 -11.68045 -11.61697 -11.21106 -11.05819 -11.03817 -10.47556 -10.36859 -10.29010 -10.16123 -9.77948 -9.64794 -9.55046 -9.25504 -8.75512 -8.41695 -8.03696 -7.74558 -6.31979 -4.37908 1.09193 1.32301 2.25164 2.29837 2.93532 3.13728 3.20347 3.26822 3.28271 3.32556 3.73385 4.24776 4.35423 4.75475 4.82426 5.03722 5.04848 5.07400 5.16508 5.20003 5.35941 5.45786 5.53734 5.54309 5.65493 5.66063 5.71773 5.82086 6.00237 6.11165 6.18330 6.26833 6.39431 6.47334 6.48323 6.74411 6.85736 7.04182 7.14891 7.19848 7.28767 7.33986 7.55399 7.66829 7.81339 7.82640 7.96027 8.57342 8.76766 9.27136 10.77075 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.003485 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.585696 B = 8032.872624 C = 9674.914204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.311 6.311 3 C 0.317 3.683 4 C -0.194 4.194 5 C -0.042 4.042 6 C -0.178 4.178 7 C 0.168 3.832 8 C 0.114 3.886 9 O -0.341 6.341 10 C 0.477 3.523 11 O -0.533 6.533 12 C 0.079 3.921 13 H 0.102 0.898 14 C -0.513 4.513 15 H 0.065 0.935 16 C 0.077 3.923 17 N -0.876 5.876 18 Si 0.902 3.098 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.271 1.271 22 C -0.019 4.019 23 C -0.086 4.086 24 C -0.133 4.133 25 C -0.145 4.145 26 C -0.131 4.131 27 C -0.113 4.113 28 N -0.538 5.538 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.158 0.842 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.268 0.732 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 -10.811 -1.473 11.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.138 3.862 4 C -0.215 4.215 5 C -0.067 4.067 6 C -0.198 4.198 7 C 0.032 3.968 8 C 0.038 3.962 9 O -0.257 6.257 10 C 0.323 3.677 11 O -0.422 6.422 12 C 0.060 3.940 13 H 0.119 0.881 14 C -0.550 4.550 15 H 0.083 0.917 16 C -0.129 4.129 17 N -0.511 5.511 18 Si 0.729 3.271 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.019 4.019 23 C -0.104 4.104 24 C -0.152 4.152 25 C -0.163 4.163 26 C -0.149 4.149 27 C -0.132 4.132 28 N -0.264 5.264 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.176 0.824 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.393 -11.061 -1.555 12.002 hybrid contribution 1.146 0.140 0.807 1.409 sum -3.247 -10.921 -0.749 11.418 Atomic orbital electron populations 1.22833 0.77386 1.02677 1.02611 1.86222 1.22824 1.24520 1.88229 1.19631 0.89282 0.84200 0.93096 1.21050 0.91862 0.99642 1.08932 1.21498 1.00850 0.91021 0.93335 1.22046 0.93879 1.01242 1.02661 1.20371 0.92177 0.90502 0.93738 1.21198 0.90867 0.80498 1.03605 1.86570 1.40470 1.14098 1.84568 1.25183 0.87601 0.85231 0.69726 1.90570 1.16428 1.87788 1.47436 1.17867 0.91691 0.81449 1.02979 0.88066 1.20585 0.99360 1.40768 0.94262 0.91712 1.24930 0.97616 0.93817 0.96490 1.69898 1.20084 1.34432 1.26729 0.86421 0.80424 0.77820 0.82473 1.20119 1.20992 1.19582 1.19953 0.92903 0.96662 0.92430 1.20847 0.94993 0.96506 0.98041 1.20959 0.99989 0.96141 0.98065 1.20839 1.00802 0.99931 0.94718 1.20917 0.97731 0.98119 0.98138 1.20983 0.98415 0.95588 0.98171 1.66718 1.41343 0.98157 1.20140 0.88820 0.92279 0.92312 0.84271 0.83819 0.82420 0.89431 0.89524 0.92178 0.87018 0.87410 0.87542 0.87337 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.38 101.05 1.05 1.44 16 2 O -0.31 -3.90 10.48 -18.72 -0.20 -4.09 16 3 C 0.32 4.42 7.49 -17.12 -0.13 4.29 16 4 C -0.19 -2.35 10.04 -39.28 -0.39 -2.75 16 5 C -0.04 -0.51 10.17 -39.31 -0.40 -0.91 16 6 C -0.18 -2.65 9.41 -39.43 -0.37 -3.02 16 7 C 0.17 2.65 6.78 -82.60 -0.56 2.09 16 8 C 0.11 1.92 6.00 36.01 0.22 2.13 16 9 O -0.34 -6.77 8.57 -39.28 -0.34 -7.10 16 10 C 0.48 10.52 7.14 36.01 0.26 10.78 16 11 O -0.53 -12.24 15.17 -18.75 -0.28 -12.52 16 12 C 0.08 1.87 2.48 -94.08 -0.23 1.63 16 13 H 0.10 2.51 7.13 -51.93 -0.37 2.14 16 14 C -0.51 -12.81 7.60 -34.44 -0.26 -13.07 16 15 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 16 C 0.08 1.94 5.45 -17.82 -0.10 1.84 16 17 N -0.88 -22.84 12.84 55.43 0.71 -22.13 16 18 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 C -0.02 -0.43 4.30 -104.62 -0.45 -0.88 16 23 C -0.09 -1.86 8.31 -39.58 -0.33 -2.19 16 24 C -0.13 -2.53 10.05 -39.59 -0.40 -2.93 16 25 C -0.14 -2.58 10.05 -39.58 -0.40 -2.98 16 26 C -0.13 -2.43 10.05 -39.58 -0.40 -2.82 16 27 C -0.11 -2.38 9.67 -39.59 -0.38 -2.77 16 28 N -0.54 -8.20 9.13 -9.55 -0.09 -8.29 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 32 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.16 2.49 6.97 -52.49 -0.37 2.13 16 35 H 0.09 1.47 8.13 -51.93 -0.42 1.04 16 36 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 37 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 38 H 0.11 2.43 7.89 -52.48 -0.41 2.02 16 39 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.11 2.31 7.96 -52.49 -0.42 1.89 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -28.73 369.39 -8.26 -36.99 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.34 Total: 6.91 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -3.28 Total: -10.11 kcal Atomic # 7 Polarization: -31.04 SS G_CDS: 0.62 Total: -30.42 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.82 Total: -23.72 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.73 -8.26 -36.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433436865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.049 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds