Wall clock time and date at job start Tue Mar 31 2020 14:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35682 * 116.99537 * 2 1 4 4 N 1.32277 * 119.68642 * 359.97438 * 3 2 1 5 5 C 1.31934 * 121.64772 * 179.97438 * 4 3 2 6 6 C 1.38091 * 120.83298 * 0.02562 * 5 4 3 7 7 C 1.38785 * 119.28833 * 359.97438 * 6 5 4 8 8 C 1.38428 * 118.48539 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.44267 * 180.02562 * 8 7 6 10 10 O 1.45203 * 109.47326 * 359.97438 * 9 8 7 11 11 C 1.34231 * 117.00186 * 179.97438 * 10 9 8 12 12 O 1.20827 * 119.99594 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00198 * 180.02562 * 11 10 9 14 14 H 1.09004 * 109.46956 * 300.00628 * 13 11 10 15 15 C 1.50694 * 109.47128 * 60.00028 * 13 11 10 16 16 H 1.08006 * 120.00114 * 34.16650 * 15 13 11 17 17 C 1.37874 * 120.00145 * 214.16640 * 15 13 11 18 18 N 1.31515 * 120.00005 * 6.40400 * 17 15 13 19 19 Si 1.86802 * 120.00065 * 186.40625 * 17 15 13 20 20 H 1.48500 * 109.47099 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47436 * 119.99711 * 19 17 15 22 22 H 1.48504 * 109.47228 * 239.99683 * 19 17 15 23 23 C 1.50698 * 109.47155 * 180.02562 * 13 11 10 24 24 C 1.38233 * 119.99588 * 293.85734 * 23 13 11 25 25 C 1.38232 * 119.99640 * 179.81569 * 24 23 13 26 26 C 1.38234 * 120.00330 * 0.39142 * 25 24 23 27 27 C 1.38239 * 119.99658 * 359.86128 * 26 25 24 28 28 C 1.38228 * 119.99951 * 359.95547 * 27 26 25 29 29 H 1.09004 * 109.46806 * 299.99767 * 1 2 3 30 30 H 1.08998 * 109.47531 * 60.00295 * 1 2 3 31 31 H 1.08999 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.07994 * 119.58110 * 180.02562 * 5 4 3 33 33 H 1.07994 * 120.35569 * 179.97438 * 6 5 4 34 34 H 1.08000 * 120.76011 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.47520 * 120.00148 * 9 8 7 36 36 H 1.09001 * 109.46814 * 239.99944 * 9 8 7 37 37 H 0.97004 * 119.99970 * 180.02562 * 18 17 15 38 38 H 1.08007 * 120.00236 * 359.97438 * 24 23 13 39 39 H 1.08005 * 119.99841 * 180.23057 * 25 24 23 40 40 H 1.07998 * 120.00201 * 179.83919 * 26 25 24 41 41 H 1.07999 * 119.99901 * 179.97438 * 27 26 25 42 42 H 1.08005 * 120.00097 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.3183 2.3143 -0.0005 5 6 1.8766 3.5097 0.0000 6 6 3.2505 3.6493 0.0005 7 6 4.0482 2.5136 0.0011 8 6 3.4321 1.2740 0.0005 9 6 4.2558 0.0120 0.0017 10 8 5.6667 0.3548 0.0027 11 6 6.5413 -0.6634 0.0044 12 8 6.1411 -1.8035 0.0045 13 6 8.0223 -0.3848 0.0060 14 1 8.2854 0.1870 -0.8839 15 6 8.3831 0.4069 1.2365 16 1 7.8549 0.2356 2.1629 17 6 9.3873 1.3499 1.1797 18 7 9.9443 1.6486 0.0264 19 14 9.9568 2.2031 2.7408 20 1 9.1762 1.6931 3.8966 21 1 11.3999 1.9275 2.9573 22 1 9.7468 3.6673 2.6096 23 6 8.7787 -1.6882 0.0071 24 6 8.7055 -2.5288 1.1020 25 6 9.3963 -3.7262 1.1013 26 6 10.1667 -4.0791 0.0092 27 6 10.2441 -3.2360 -1.0835 28 6 9.5503 -2.0404 -1.0845 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.2513 4.3902 -0.0001 33 1 3.6993 4.6315 0.0005 34 1 5.1252 2.5951 0.0019 35 1 4.0230 -0.5730 0.8914 36 1 4.0250 -0.5732 -0.8885 37 1 10.6511 2.3118 -0.0136 38 1 8.1066 -2.2513 1.9568 39 1 9.3361 -4.3847 1.9553 40 1 10.7085 -5.0134 0.0098 41 1 10.8463 -3.5115 -1.9366 42 1 9.6103 -1.3819 -1.9384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460270591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:10 Heat of formation + Delta-G solvation = -79.210101 kcal Electronic energy + Delta-G solvation = -26985.283012 eV Core-core repulsion = 23088.180727 eV Total energy + Delta-G solvation = -3897.102284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.88604 -41.32503 -39.74844 -38.89842 -37.47854 -35.63048 -34.09722 -32.98762 -32.19529 -31.58661 -29.52397 -28.34152 -27.78868 -25.94508 -24.14367 -23.49938 -23.24287 -22.64122 -21.24225 -19.40758 -18.97145 -18.46279 -17.84832 -17.63565 -17.44211 -17.27669 -16.83999 -16.47130 -16.07521 -15.77480 -15.45944 -15.18265 -15.15242 -14.80817 -14.38319 -14.21520 -14.06804 -14.01698 -13.66811 -13.41446 -13.37553 -12.99188 -12.85515 -12.79303 -12.45698 -12.24326 -12.21228 -12.01583 -11.91345 -11.74486 -11.36558 -11.09471 -10.76459 -10.75340 -10.66114 -9.60639 -9.46263 -9.36826 -8.25917 -6.36255 0.03909 0.24088 0.68349 0.72153 1.36313 1.41664 1.47817 1.56519 1.85150 2.07886 2.40240 2.70037 3.03494 3.19668 3.28811 3.68314 3.92250 4.01638 4.11760 4.17905 4.19527 4.26780 4.30258 4.39007 4.42231 4.42549 4.45582 4.51253 4.66372 4.74283 4.80955 4.89999 5.03852 5.08986 5.17706 5.30870 5.38081 5.47601 5.53882 5.60095 5.74733 5.77047 5.85070 6.12892 6.16627 6.35357 6.65037 6.74762 7.00360 7.29929 8.83915 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.003804 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.982793 B = 7359.732261 C = 9080.710672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.325 6.325 3 C 0.315 3.685 4 N -0.545 5.545 5 C 0.139 3.861 6 C -0.199 4.199 7 C -0.032 4.032 8 C -0.177 4.177 9 C 0.123 3.877 10 O -0.347 6.347 11 C 0.478 3.522 12 O -0.548 6.548 13 C 0.077 3.923 14 H 0.081 0.919 15 C -0.519 4.519 16 H 0.053 0.947 17 C 0.037 3.963 18 N -0.905 5.905 19 Si 0.957 3.043 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.271 1.271 23 C -0.050 4.050 24 C -0.110 4.110 25 C -0.133 4.133 26 C -0.137 4.137 27 C -0.127 4.127 28 C -0.138 4.138 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.202 0.798 33 H 0.170 0.830 34 H 0.142 0.858 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.270 0.730 38 H 0.097 0.903 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.617 0.550 -0.939 11.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.232 6.232 3 C 0.136 3.864 4 N -0.268 5.268 5 C -0.017 4.017 6 C -0.219 4.219 7 C -0.057 4.057 8 C -0.180 4.180 9 C 0.048 3.952 10 O -0.263 6.263 11 C 0.324 3.676 12 O -0.439 6.439 13 C 0.057 3.943 14 H 0.099 0.901 15 C -0.557 4.557 16 H 0.072 0.928 17 C -0.165 4.165 18 N -0.542 5.542 19 Si 0.782 3.218 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.196 1.196 23 C -0.050 4.050 24 C -0.128 4.128 25 C -0.151 4.151 26 C -0.154 4.154 27 C -0.145 4.145 28 C -0.157 4.157 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.137 0.863 32 H 0.218 0.782 33 H 0.187 0.813 34 H 0.160 0.840 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.157 0.843 40 H 0.168 0.832 41 H 0.161 0.839 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.464 -0.007 -1.031 12.506 hybrid contribution 0.924 0.607 0.667 1.291 sum -11.540 0.600 -0.364 11.561 Atomic orbital electron populations 1.23092 0.75397 1.04644 1.02598 1.86249 1.24863 1.24414 1.87672 1.19466 0.87864 0.85729 0.93301 1.67457 1.40201 0.99021 1.20162 1.23126 0.93415 0.93971 0.91141 1.22363 0.94802 1.00292 1.04444 1.21576 1.01873 0.90900 0.91381 1.19610 0.91111 0.96004 1.11290 1.21294 0.77093 0.94398 1.02382 1.86533 1.17100 1.38817 1.83898 1.24884 0.90935 0.82198 0.69572 1.90528 1.81199 1.23882 1.48252 1.17788 0.81837 0.93047 1.01580 0.90115 1.20692 1.20030 1.20584 0.94356 0.92835 1.25572 0.95744 0.96046 0.99117 1.69967 1.25782 1.32860 1.25549 0.85514 0.78147 0.78515 0.79629 1.19408 1.20420 1.19635 1.20007 0.96945 0.94133 0.93941 1.20893 0.99530 0.94900 0.97473 1.21349 0.97757 0.96275 0.99680 1.21343 1.00000 1.00631 0.93469 1.21333 0.99648 0.93890 0.99627 1.21159 0.98966 0.97664 0.97865 0.92075 0.91970 0.86281 0.78167 0.81256 0.84039 0.90977 0.90612 0.92037 0.88478 0.84317 0.83187 0.83855 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.38 113.37 1.18 1.89 16 2 O -0.32 -9.20 9.91 -90.01 -0.89 -10.09 16 3 C 0.31 9.43 7.47 84.78 0.63 10.06 16 4 N -0.54 -14.04 9.22 -308.93 -2.85 -16.89 16 5 C 0.14 2.82 11.18 84.64 0.95 3.76 16 6 C -0.20 -4.41 10.11 22.37 0.23 -4.19 16 7 C -0.03 -0.96 9.48 22.45 0.21 -0.75 16 8 C -0.18 -5.82 5.91 -19.67 -0.12 -5.94 16 9 C 0.12 4.60 5.35 71.24 0.38 4.99 16 10 O -0.35 -15.31 8.69 -51.42 -0.45 -15.76 16 11 C 0.48 23.09 7.14 71.24 0.51 23.59 16 12 O -0.55 -27.24 15.17 21.96 0.33 -26.91 16 13 C 0.08 3.89 2.55 -13.04 -0.03 3.86 16 14 H 0.08 4.39 7.00 -2.38 -0.02 4.37 16 15 C -0.52 -27.51 7.60 25.60 0.19 -27.32 16 16 H 0.05 2.88 7.82 -2.91 -0.02 2.85 16 17 C 0.04 1.95 5.45 84.65 0.46 2.42 16 18 N -0.90 -48.97 12.78 21.45 0.27 -48.69 16 19 Si 0.96 41.58 29.54 68.60 2.03 43.60 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 23 C -0.05 -2.36 4.30 -19.87 -0.09 -2.45 16 24 C -0.11 -4.88 8.31 22.27 0.19 -4.70 16 25 C -0.13 -4.83 10.05 22.27 0.22 -4.60 16 26 C -0.14 -4.45 10.05 22.27 0.22 -4.23 16 27 C -0.13 -4.47 10.05 22.27 0.22 -4.25 16 28 C -0.14 -5.94 9.67 22.27 0.22 -5.73 16 29 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 30 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 31 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.20 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 34 H 0.14 4.73 7.09 -2.91 -0.02 4.71 16 35 H 0.07 2.74 8.13 -2.39 -0.02 2.73 16 36 H 0.08 2.81 8.13 -2.39 -0.02 2.79 16 37 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 38 H 0.10 4.48 7.89 -2.91 -0.02 4.45 16 39 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 40 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 41 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 42 H 0.11 4.69 7.96 -2.91 -0.02 4.66 16 Total: -1.00 -66.15 368.63 5.05 -61.09 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 1.03 Total: 27.22 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 5.58 Total: -13.58 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -2.57 Total: -65.58 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -1.01 Total: -52.76 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -66.15 5.05 -61.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460270591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.116 kcal (2) G-P(sol) polarization free energy of solvation -66.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds