Wall clock time and date at job start Tue Mar 31 2020 14:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36057 * 117.00009 * 2 1 4 4 C 1.38551 * 120.00741 * 0.02562 * 3 2 1 5 5 C 1.38188 * 120.07080 * 179.70421 * 4 3 2 6 6 C 1.38841 * 120.07286 * 0.54236 * 5 4 3 7 7 N 1.40099 * 119.99494 * 179.72461 * 6 5 4 8 8 C 1.34777 * 120.00006 * 215.14720 * 7 6 5 9 9 O 1.21294 * 120.00277 * 355.73844 * 8 7 6 10 10 C 1.50706 * 119.99951 * 175.73063 * 8 7 6 11 11 H 1.08996 * 109.46739 * 60.00187 * 10 8 7 12 12 C 1.50696 * 109.46985 * 300.00360 * 10 8 7 13 13 H 1.08008 * 119.99889 * 125.69647 * 12 10 8 14 14 C 1.37882 * 120.00437 * 305.97258 * 12 10 8 15 15 N 1.31511 * 119.99705 * 6.90809 * 14 12 10 16 16 Si 1.86797 * 120.00166 * 186.91445 * 14 12 10 17 17 H 1.48500 * 109.47439 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47099 * 119.99495 * 16 14 12 19 19 H 1.48506 * 109.46944 * 239.99616 * 16 14 12 20 20 C 1.50692 * 109.47045 * 180.02562 * 10 8 7 21 21 C 1.38237 * 120.00127 * 311.24591 * 20 10 8 22 22 C 1.38237 * 119.99971 * 179.81536 * 21 20 10 23 23 C 1.38235 * 119.99964 * 0.38496 * 22 21 20 24 24 C 1.38239 * 120.00095 * 359.86619 * 23 22 21 25 25 C 1.38227 * 119.99852 * 359.94913 * 24 23 22 26 26 C 1.38806 * 120.00614 * 359.45669 * 6 5 4 27 27 C 1.38499 * 119.93282 * 0.26954 * 26 6 5 28 28 O 1.35998 * 120.04083 * 179.97438 * 27 26 6 29 29 H 1.09000 * 109.47073 * 59.99925 * 1 2 3 30 30 H 1.09001 * 109.47284 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47387 * 300.00149 * 1 2 3 32 32 H 1.08009 * 119.96516 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.95996 * 180.29924 * 5 4 3 34 34 H 0.97006 * 119.99797 * 35.15503 * 7 6 5 35 35 H 0.96997 * 120.00571 * 180.02562 * 15 14 12 36 36 H 1.07993 * 120.00102 * 359.97438 * 21 20 10 37 37 H 1.07995 * 120.00034 * 180.22892 * 22 21 20 38 38 H 1.08007 * 120.00023 * 179.83874 * 23 22 21 39 39 H 1.07995 * 120.00001 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.00006 * 179.97438 * 25 24 23 41 41 H 1.08008 * 120.03693 * 180.24928 * 26 6 5 42 42 H 0.96706 * 113.99539 * 89.99897 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2922 2.3744 0.0005 5 6 1.9182 3.6063 0.0067 6 6 3.3045 3.6823 0.0010 7 7 3.9374 4.9322 0.0015 8 6 5.0905 5.1039 -0.6749 9 8 5.6207 4.1587 -1.2196 10 6 5.7210 6.4704 -0.7547 11 1 5.9502 6.8239 0.2505 12 6 4.7639 7.4273 -1.4176 13 1 4.4914 8.3479 -0.9229 14 6 4.2317 7.1249 -2.6531 15 7 4.4499 5.9453 -3.1922 16 14 3.2010 8.3907 -3.5613 17 1 3.1053 9.6282 -2.7461 18 1 3.8384 8.7045 -4.8653 19 1 1.8395 7.8454 -3.7943 20 6 6.9911 6.3913 -1.5617 21 6 7.9249 5.4099 -1.2864 22 6 9.0883 5.3349 -2.0293 23 6 9.3215 6.2462 -3.0422 24 6 8.3900 7.2308 -3.3141 25 6 7.2250 7.3034 -2.5738 26 6 4.0634 2.5201 0.0005 27 6 3.4363 1.2852 0.0000 28 8 4.1778 0.1451 -0.0010 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2136 2.3173 0.0005 33 1 1.3283 4.5110 0.0120 34 1 3.5458 5.6740 0.4887 35 1 4.0759 5.7326 -4.0615 36 1 7.7444 4.7002 -0.4927 37 1 9.8162 4.5660 -1.8166 38 1 10.2317 6.1893 -3.6209 39 1 8.5724 7.9431 -4.1052 40 1 6.4975 8.0729 -2.7859 41 1 5.1419 2.5787 0.0001 42 1 4.3926 -0.1851 0.8822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638093836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:37 Heat of formation + Delta-G solvation = -54.991336 kcal Electronic energy + Delta-G solvation = -27738.767592 eV Core-core repulsion = 23842.715512 eV Total energy + Delta-G solvation = -3896.052080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.25425 -39.17169 -37.95877 -37.26844 -36.10496 -33.71032 -33.17661 -30.95377 -29.79578 -29.76249 -28.85271 -27.45063 -26.58159 -24.05529 -22.47754 -22.04827 -21.32343 -20.50256 -19.31939 -18.40462 -17.55056 -17.04241 -16.42715 -15.94340 -15.65003 -15.45310 -15.15031 -14.92878 -14.35011 -14.21869 -13.91867 -13.81186 -13.67083 -13.41559 -12.78985 -12.54915 -12.38604 -12.34048 -12.07037 -11.99602 -11.89011 -11.40531 -11.15308 -11.03069 -10.93300 -10.79025 -10.56012 -10.38875 -10.10554 -9.79746 -9.46307 -9.12906 -8.81897 -8.53037 -8.27193 -7.78266 -7.50599 -7.14911 -6.23538 -4.37827 1.54354 1.72950 2.45443 2.52201 3.14752 3.25929 3.26870 3.41146 3.80636 3.97704 4.17902 4.29987 4.62070 4.92640 4.98865 5.06085 5.14100 5.16237 5.38113 5.46027 5.64715 5.79800 5.88245 5.92708 5.98248 6.09109 6.21681 6.32302 6.42359 6.50451 6.58921 6.68357 6.77120 6.82636 6.87512 7.04210 7.13037 7.39134 7.46802 7.54737 7.61639 7.62437 7.70143 8.02432 8.06340 8.18321 8.42659 8.68017 9.29356 9.50414 10.78517 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.004220 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.897939 B = 6633.981122 C = 8103.422193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.064 3.936 4 C -0.175 4.175 5 C -0.127 4.127 6 C 0.167 3.833 7 N -0.674 5.674 8 C 0.554 3.446 9 O -0.524 6.524 10 C 0.058 3.942 11 H 0.061 0.939 12 C -0.545 4.545 13 H 0.070 0.930 14 C 0.076 3.924 15 N -0.840 5.840 16 Si 0.885 3.115 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.284 1.284 20 C -0.020 4.020 21 C -0.101 4.101 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.146 4.146 25 C -0.073 4.073 26 C -0.114 4.114 27 C 0.091 3.909 28 O -0.485 6.485 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.407 0.593 35 H 0.267 0.733 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.129 0.871 41 H 0.151 0.849 42 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 -4.534 8.494 10.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.018 3.982 4 C -0.194 4.194 5 C -0.148 4.148 6 C 0.070 3.930 7 N -0.318 5.318 8 C 0.344 3.656 9 O -0.399 6.399 10 C 0.037 3.963 11 H 0.079 0.921 12 C -0.583 4.583 13 H 0.088 0.912 14 C -0.132 4.132 15 N -0.472 5.472 16 Si 0.712 3.288 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.210 1.210 20 C -0.021 4.021 21 C -0.119 4.119 22 C -0.159 4.159 23 C -0.161 4.161 24 C -0.164 4.164 25 C -0.091 4.091 26 C -0.135 4.135 27 C 0.045 3.955 28 O -0.293 6.293 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.242 0.758 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.147 0.853 41 H 0.169 0.831 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.675 -5.412 7.262 9.774 hybrid contribution -1.247 0.965 -0.329 1.611 sum -4.922 -4.447 6.933 9.595 Atomic orbital electron populations 1.22979 0.79373 1.03324 1.01060 1.86112 1.20460 1.26626 1.89559 1.19284 0.91580 0.84562 1.02747 1.20802 0.99403 0.91460 1.07735 1.20756 0.93074 0.97492 1.03461 1.17566 0.90734 0.86329 0.98375 1.43584 1.26003 1.09600 1.52635 1.21255 0.78765 0.91479 0.74063 1.90547 1.62467 1.43206 1.43660 1.17877 0.91683 0.90810 0.95928 0.92131 1.20731 1.28160 1.05561 1.03806 0.91214 1.25062 0.95611 0.95099 0.97451 1.69982 1.41483 1.18788 1.16987 0.86629 0.80120 0.81826 0.80207 1.19366 1.20601 1.20970 1.19843 0.93693 0.93116 0.95405 1.20964 0.93433 0.97526 0.99972 1.20847 0.97933 0.99348 0.97816 1.20811 0.99178 0.97107 0.99035 1.21021 0.95607 0.99291 1.00483 1.21210 0.95054 0.99245 0.93559 1.21389 1.01890 0.89396 1.00864 1.17547 0.85797 0.86270 1.05846 1.84918 1.72228 1.39558 1.32628 0.92945 0.88734 0.93039 0.85423 0.85472 0.75842 0.92243 0.87471 0.87897 0.88033 0.87876 0.85287 0.83106 0.76605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.67 10.28 -34.53 -0.35 -5.02 16 3 C 0.06 1.05 6.70 -39.12 -0.26 0.79 16 4 C -0.17 -2.62 9.03 -39.48 -0.36 -2.97 16 5 C -0.13 -2.07 9.96 -39.38 -0.39 -2.46 16 6 C 0.17 3.14 6.29 -83.65 -0.53 2.61 16 7 N -0.67 -13.11 5.22 -9.84 -0.05 -13.16 16 8 C 0.55 12.58 5.02 -10.98 -0.06 12.52 16 9 O -0.52 -13.42 11.45 5.55 0.06 -13.36 16 10 C 0.06 1.31 2.77 -94.08 -0.26 1.05 16 11 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 12 C -0.55 -12.75 7.15 -34.44 -0.25 -12.99 16 13 H 0.07 1.58 7.82 -52.48 -0.41 1.17 16 14 C 0.08 1.88 3.88 -17.82 -0.07 1.81 16 15 N -0.84 -22.61 11.12 55.43 0.62 -21.99 16 16 Si 0.89 19.41 29.54 -169.99 -5.02 14.39 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 20 C -0.02 -0.45 4.68 -104.62 -0.49 -0.94 16 21 C -0.10 -2.20 8.22 -39.58 -0.33 -2.52 16 22 C -0.14 -2.81 10.05 -39.58 -0.40 -3.21 16 23 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 24 C -0.15 -2.97 10.05 -39.58 -0.40 -3.37 16 25 C -0.07 -1.65 8.52 -39.58 -0.34 -1.99 16 26 C -0.11 -2.21 8.63 -39.28 -0.34 -2.55 16 27 C 0.09 1.63 6.71 -39.14 -0.26 1.36 16 28 O -0.49 -8.01 13.28 -34.34 -0.46 -8.46 16 29 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 32 H 0.13 1.52 6.29 -52.48 -0.33 1.19 16 33 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 34 H 0.41 6.86 8.77 -40.82 -0.36 6.50 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.11 2.28 7.14 -52.49 -0.37 1.90 16 37 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.13 3.01 5.98 -52.49 -0.31 2.69 16 41 H 0.15 3.14 6.26 -52.48 -0.33 2.82 16 42 H 0.38 4.17 9.06 45.56 0.41 4.58 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -31.65 353.21 -8.18 -39.83 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -4.17 Total: 17.22 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -4.12 Total: -14.76 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.56 Total: -35.15 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.75 Total: -26.84 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.65 -8.18 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638093836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.162 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds