Wall clock time and date at job start Tue Mar 31 2020 14:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36057 * 117.00009 * 2 1 4 4 C 1.38551 * 120.00741 * 0.02562 * 3 2 1 5 5 C 1.38188 * 120.07080 * 179.70421 * 4 3 2 6 6 C 1.38841 * 120.07286 * 0.54236 * 5 4 3 7 7 N 1.40099 * 119.99494 * 179.72461 * 6 5 4 8 8 C 1.34777 * 120.00006 * 215.14720 * 7 6 5 9 9 O 1.21294 * 120.00277 * 355.73844 * 8 7 6 10 10 C 1.50706 * 119.99951 * 175.73063 * 8 7 6 11 11 H 1.08996 * 109.46739 * 60.00187 * 10 8 7 12 12 C 1.50696 * 109.46985 * 300.00360 * 10 8 7 13 13 H 1.08008 * 119.99889 * 125.69647 * 12 10 8 14 14 C 1.37882 * 120.00437 * 305.97258 * 12 10 8 15 15 N 1.31511 * 119.99705 * 6.90809 * 14 12 10 16 16 Si 1.86797 * 120.00166 * 186.91445 * 14 12 10 17 17 H 1.48500 * 109.47439 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47099 * 119.99495 * 16 14 12 19 19 H 1.48506 * 109.46944 * 239.99616 * 16 14 12 20 20 C 1.50692 * 109.47045 * 180.02562 * 10 8 7 21 21 C 1.38237 * 120.00127 * 311.24591 * 20 10 8 22 22 C 1.38237 * 119.99971 * 179.81536 * 21 20 10 23 23 C 1.38235 * 119.99964 * 0.38496 * 22 21 20 24 24 C 1.38239 * 120.00095 * 359.86619 * 23 22 21 25 25 C 1.38227 * 119.99852 * 359.94913 * 24 23 22 26 26 C 1.38806 * 120.00614 * 359.45669 * 6 5 4 27 27 C 1.38499 * 119.93282 * 0.26954 * 26 6 5 28 28 O 1.35998 * 120.04083 * 179.97438 * 27 26 6 29 29 H 1.09000 * 109.47073 * 59.99925 * 1 2 3 30 30 H 1.09001 * 109.47284 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47387 * 300.00149 * 1 2 3 32 32 H 1.08009 * 119.96516 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.95996 * 180.29924 * 5 4 3 34 34 H 0.97006 * 119.99797 * 35.15503 * 7 6 5 35 35 H 0.96997 * 120.00571 * 180.02562 * 15 14 12 36 36 H 1.07993 * 120.00102 * 359.97438 * 21 20 10 37 37 H 1.07995 * 120.00034 * 180.22892 * 22 21 20 38 38 H 1.08007 * 120.00023 * 179.83874 * 23 22 21 39 39 H 1.07995 * 120.00001 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.00006 * 179.97438 * 25 24 23 41 41 H 1.08008 * 120.03693 * 180.24928 * 26 6 5 42 42 H 0.96706 * 113.99539 * 89.99897 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2922 2.3744 0.0005 5 6 1.9182 3.6063 0.0067 6 6 3.3045 3.6823 0.0010 7 7 3.9374 4.9322 0.0015 8 6 5.0905 5.1039 -0.6749 9 8 5.6207 4.1587 -1.2196 10 6 5.7210 6.4704 -0.7547 11 1 5.9502 6.8239 0.2505 12 6 4.7639 7.4273 -1.4176 13 1 4.4914 8.3479 -0.9229 14 6 4.2317 7.1249 -2.6531 15 7 4.4499 5.9453 -3.1922 16 14 3.2010 8.3907 -3.5613 17 1 3.1053 9.6282 -2.7461 18 1 3.8384 8.7045 -4.8653 19 1 1.8395 7.8454 -3.7943 20 6 6.9911 6.3913 -1.5617 21 6 7.9249 5.4099 -1.2864 22 6 9.0883 5.3349 -2.0293 23 6 9.3215 6.2462 -3.0422 24 6 8.3900 7.2308 -3.3141 25 6 7.2250 7.3034 -2.5738 26 6 4.0634 2.5201 0.0005 27 6 3.4363 1.2852 0.0000 28 8 4.1778 0.1451 -0.0010 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2136 2.3173 0.0005 33 1 1.3283 4.5110 0.0120 34 1 3.5458 5.6740 0.4887 35 1 4.0759 5.7326 -4.0615 36 1 7.7444 4.7002 -0.4927 37 1 9.8162 4.5660 -1.8166 38 1 10.2317 6.1893 -3.6209 39 1 8.5724 7.9431 -4.1052 40 1 6.4975 8.0729 -2.7859 41 1 5.1419 2.5787 0.0001 42 1 4.3926 -0.1851 0.8822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638093836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:36 Heat of formation + Delta-G solvation = -75.279128 kcal Electronic energy + Delta-G solvation = -27739.647337 eV Core-core repulsion = 23842.715512 eV Total energy + Delta-G solvation = -3896.931825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60342 -40.70009 -39.44387 -38.55950 -37.52149 -35.51715 -34.68172 -32.71373 -31.40144 -31.10404 -30.15873 -28.90135 -27.78559 -25.83198 -23.79959 -23.45785 -22.95200 -22.03529 -20.96932 -19.71684 -18.81027 -18.70209 -17.87514 -17.36314 -17.11478 -16.85679 -16.61551 -16.53706 -15.81047 -15.61209 -15.39951 -15.27133 -15.09261 -14.87006 -14.30056 -14.05879 -14.03943 -13.90809 -13.59417 -13.36370 -13.05187 -12.99387 -12.79282 -12.51034 -12.32933 -12.22567 -12.07862 -11.77407 -11.69526 -11.47864 -11.18449 -10.68104 -10.57438 -10.16965 -9.74429 -9.42216 -9.15084 -8.52946 -8.11706 -6.28596 0.23808 0.38974 0.83538 0.88471 1.39563 1.46726 1.54493 2.21074 2.32951 2.42255 2.58415 2.83751 3.18129 3.27767 3.34240 3.88764 4.10039 4.29542 4.31700 4.33877 4.43064 4.43479 4.47350 4.56907 4.62860 4.70166 4.75395 4.91001 4.95797 4.97561 5.04969 5.12115 5.22971 5.40228 5.43672 5.51373 5.53546 5.69723 5.86094 5.90033 5.94363 6.09312 6.36597 6.37980 6.49517 6.72931 6.88652 6.97398 7.40710 7.83665 8.88751 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.004220 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.897939 B = 6633.981122 C = 8103.422193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.067 3.933 4 C -0.164 4.164 5 C -0.123 4.123 6 C 0.139 3.861 7 N -0.667 5.667 8 C 0.553 3.447 9 O -0.560 6.560 10 C 0.049 3.951 11 H 0.076 0.924 12 C -0.534 4.534 13 H 0.077 0.923 14 C 0.043 3.957 15 N -0.875 5.875 16 Si 0.938 3.062 17 H -0.256 1.256 18 H -0.289 1.289 19 H -0.289 1.289 20 C -0.040 4.040 21 C -0.118 4.118 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.150 4.150 25 C -0.096 4.096 26 C -0.134 4.134 27 C 0.078 3.922 28 O -0.499 6.499 29 H 0.058 0.942 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.166 0.834 33 H 0.148 0.852 34 H 0.417 0.583 35 H 0.256 0.744 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 -4.444 8.676 11.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.021 3.979 4 C -0.183 4.183 5 C -0.144 4.144 6 C 0.044 3.956 7 N -0.311 5.311 8 C 0.344 3.656 9 O -0.438 6.438 10 C 0.028 3.972 11 H 0.093 0.907 12 C -0.572 4.572 13 H 0.095 0.905 14 C -0.161 4.161 15 N -0.509 5.509 16 Si 0.764 3.236 17 H -0.179 1.179 18 H -0.216 1.216 19 H -0.215 1.215 20 C -0.041 4.041 21 C -0.136 4.136 22 C -0.163 4.163 23 C -0.159 4.159 24 C -0.168 4.168 25 C -0.114 4.114 26 C -0.155 4.155 27 C 0.032 3.968 28 O -0.311 6.311 29 H 0.077 0.923 30 H 0.137 0.863 31 H 0.090 0.910 32 H 0.183 0.817 33 H 0.166 0.834 34 H 0.253 0.747 35 H 0.065 0.935 36 H 0.119 0.881 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -4.969 -5.307 7.501 10.446 hybrid contribution -0.878 0.824 -0.311 1.244 sum -5.847 -4.483 7.190 10.295 Atomic orbital electron populations 1.23365 0.76655 1.05534 1.02271 1.86102 1.23233 1.25785 1.89192 1.19344 0.91174 0.85767 1.01625 1.21174 1.01160 0.90226 1.05765 1.21007 0.91978 0.99044 1.02351 1.17784 0.91919 0.85647 1.00282 1.43366 1.25222 1.10446 1.52099 1.21229 0.79398 0.91059 0.73880 1.90521 1.63661 1.44150 1.45439 1.18007 0.91739 0.90766 0.96721 0.90654 1.20941 1.27218 1.05516 1.03499 0.90536 1.25566 0.96497 0.95968 0.98107 1.70161 1.43333 1.20674 1.16747 0.85805 0.78331 0.80536 0.78897 1.17916 1.21559 1.21535 1.19969 0.94147 0.93897 0.96109 1.21048 0.94387 0.97487 1.00698 1.21219 0.97653 1.00002 0.97376 1.21212 1.00081 0.95928 0.98636 1.21345 0.94944 1.00034 1.00511 1.21223 0.96102 0.99474 0.94603 1.21244 1.00809 0.90688 1.02724 1.17633 0.86905 0.85952 1.06273 1.84839 1.72340 1.39145 1.34748 0.92348 0.86274 0.91033 0.81679 0.83414 0.74660 0.93496 0.88091 0.85201 0.84353 0.85432 0.86638 0.85770 0.74146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -9.09 10.28 -80.24 -0.82 -9.91 16 3 C 0.07 2.11 6.70 22.57 0.15 2.26 16 4 C -0.16 -4.53 9.03 22.33 0.20 -4.32 16 5 C -0.12 -3.86 9.96 22.40 0.22 -3.63 16 6 C 0.14 5.32 6.29 38.10 0.24 5.56 16 7 N -0.67 -26.50 5.22 -303.43 -1.58 -28.09 16 8 C 0.55 25.99 5.02 87.66 0.44 26.43 16 9 O -0.56 -30.06 11.45 -3.07 -0.04 -30.09 16 10 C 0.05 2.24 2.77 -13.03 -0.04 2.20 16 11 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 12 C -0.53 -25.06 7.15 25.60 0.18 -24.88 16 13 H 0.08 3.42 7.82 -2.91 -0.02 3.40 16 14 C 0.04 2.13 3.88 84.66 0.33 2.46 16 15 N -0.87 -48.13 11.12 21.45 0.24 -47.90 16 16 Si 0.94 39.88 29.54 68.60 2.03 41.90 16 17 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 18 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 20 C -0.04 -1.89 4.68 -19.87 -0.09 -1.99 16 21 C -0.12 -5.25 8.22 22.27 0.18 -5.07 16 22 C -0.14 -5.63 10.05 22.27 0.22 -5.41 16 23 C -0.14 -5.15 10.05 22.27 0.22 -4.93 16 24 C -0.15 -5.97 10.05 22.27 0.22 -5.75 16 25 C -0.10 -4.39 8.52 22.27 0.19 -4.20 16 26 C -0.13 -5.37 8.63 22.47 0.19 -5.17 16 27 C 0.08 2.82 6.71 22.55 0.15 2.97 16 28 O -0.50 -16.73 13.28 -79.56 -1.06 -17.79 16 29 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 30 H 0.12 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 32 H 0.17 3.24 6.29 -2.91 -0.02 3.22 16 33 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 34 H 0.42 14.16 8.77 -92.70 -0.81 13.34 16 35 H 0.26 14.16 8.31 -92.71 -0.77 13.38 16 36 H 0.10 4.50 7.14 -2.91 -0.02 4.48 16 37 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 38 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 39 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.12 5.47 5.98 -2.91 -0.02 5.46 16 41 H 0.12 5.59 6.26 -2.91 -0.02 5.57 16 42 H 0.40 8.92 9.06 -74.05 -0.67 8.25 16 Total: -1.00 -69.81 353.21 2.50 -67.31 By element: Atomic # 1 Polarization: 47.04 SS G_CDS: -0.40 Total: 46.64 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 4.14 Total: -22.08 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -1.35 Total: -75.98 kcal Atomic # 8 Polarization: -55.88 SS G_CDS: -1.92 Total: -57.79 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.90 kcal Total: -69.81 2.50 -67.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638093836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.968 kcal (2) G-P(sol) polarization free energy of solvation -69.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds