Wall clock time and date at job start Tue Mar 31 2020 16:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47299 * 317.60981 * 3 2 1 5 5 C 1.36962 * 120.00032 * 94.37466 * 4 3 2 6 6 H 1.07998 * 120.00104 * 226.77549 * 5 4 3 7 7 C 1.38974 * 119.99941 * 46.77314 * 5 4 3 8 8 N 1.31418 * 119.99866 * 205.71122 * 7 5 4 9 9 Si 1.86798 * 120.00460 * 25.71526 * 7 5 4 10 10 H 1.48500 * 109.47330 * 85.69255 * 9 7 5 11 11 H 1.48498 * 109.47311 * 205.69690 * 9 7 5 12 12 H 1.48508 * 109.46731 * 325.69472 * 9 7 5 13 13 C 1.34781 * 120.00032 * 274.37040 * 4 3 2 14 14 O 1.21662 * 119.99557 * 5.54306 * 13 4 3 15 15 C 1.47176 * 120.00064 * 185.54122 * 13 4 3 16 16 C 1.46740 * 126.89125 * 6.17473 * 15 13 4 17 17 C 1.34410 * 106.52137 * 179.97438 * 16 15 13 18 18 C 1.50696 * 125.55379 * 179.97438 * 17 16 15 19 19 N 1.36751 * 108.89266 * 0.02562 * 17 16 15 20 20 C 1.39865 * 124.94963 * 179.97438 * 19 17 16 21 21 C 1.41963 * 126.88284 * 225.01897 * 20 19 17 22 22 C 1.35282 * 103.95688 * 179.97438 * 21 20 19 23 23 C 1.50700 * 126.70611 * 179.97438 * 22 21 20 24 24 O 1.34075 * 106.59028 * 0.02562 * 22 21 20 25 25 N 1.20913 * 111.73284 * 359.70541 * 24 22 21 26 26 C 1.35536 * 110.09750 * 359.75153 * 19 17 16 27 27 C 1.50702 * 125.86184 * 180.25581 * 26 19 17 28 28 H 4.40634 * 5.51480 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.46795 * 197.60714 * 3 2 1 30 30 H 1.09003 * 109.47423 * 77.61596 * 3 2 1 31 31 H 0.97002 * 120.00217 * 180.02562 * 8 7 5 32 32 H 1.07999 * 126.74442 * 359.96570 * 16 15 13 33 33 H 1.09007 * 109.47428 * 95.19830 * 18 17 16 34 34 H 1.09003 * 109.47251 * 215.20273 * 18 17 16 35 35 H 1.08999 * 109.47234 * 335.20392 * 18 17 16 36 36 H 1.07992 * 128.02554 * 359.97438 * 21 20 19 37 37 H 1.09006 * 109.46479 * 90.00651 * 23 22 21 38 38 H 1.09002 * 109.47213 * 210.00404 * 23 22 21 39 39 H 1.08991 * 109.47209 * 330.00614 * 23 22 21 40 40 H 1.09003 * 109.47073 * 270.19285 * 27 26 19 41 41 H 1.08991 * 109.47358 * 30.20197 * 27 26 19 42 42 H 1.08999 * 109.47081 * 150.20403 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0192 0.9312 5 6 3.4490 -2.2710 0.4726 6 1 3.0942 -3.1441 1.0001 7 6 4.2242 -2.4176 -0.6714 8 7 4.1232 -3.5079 -1.3983 9 14 5.4098 -1.0652 -1.1761 10 1 6.7016 -1.2494 -0.4673 11 1 5.6364 -1.1273 -2.6424 12 1 4.8337 0.2564 -0.8198 13 6 3.2755 -0.7257 2.2391 14 8 2.9024 0.3514 2.6642 15 6 3.8803 -1.7082 3.1529 16 6 4.4927 -2.9906 2.7874 17 6 4.9112 -3.5547 3.9334 18 6 5.6040 -4.8877 4.0521 19 7 4.6049 -2.7223 4.9743 20 6 4.8902 -2.9822 6.3187 21 6 4.0183 -2.8033 7.4247 22 6 4.7575 -3.1918 8.4890 23 6 4.3212 -3.2069 9.9314 24 8 5.9545 -3.5597 8.0100 25 7 6.0106 -3.4433 6.8078 26 6 3.9890 -1.6067 4.5128 27 6 3.5044 -0.4538 5.3537 28 1 -1.0498 -0.0004 0.0001 29 1 3.0088 0.9804 0.3109 30 1 3.0095 -0.2196 -1.0038 31 1 4.6646 -3.6104 -2.1966 32 1 4.5883 -3.4009 1.7930 33 1 6.6834 -4.7360 4.0692 34 1 5.2914 -5.3789 4.9735 35 1 5.3385 -5.5123 3.1992 36 1 3.0009 -2.4411 7.4180 37 1 3.8739 -4.1730 10.1655 38 1 5.1858 -3.0414 10.5743 39 1 3.5884 -2.4173 10.0976 40 1 2.4759 -0.6378 5.6645 41 1 4.1382 -0.3551 6.2349 42 1 3.5483 0.4655 4.7697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282115607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:05 Heat of formation + Delta-G solvation = 155.110037 kcal Electronic energy + Delta-G solvation = -27729.265658 eV Core-core repulsion = 23874.617008 eV Total energy + Delta-G solvation = -3854.648650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.19451 -41.01916 -38.49172 -35.15291 -34.63991 -33.70215 -32.66114 -32.22972 -31.59336 -30.27697 -28.80790 -28.09872 -26.87677 -25.25678 -23.80651 -23.70753 -22.25018 -20.88126 -19.08118 -18.65241 -18.00282 -17.87787 -17.23225 -16.53607 -16.20230 -15.59869 -14.98995 -14.93700 -14.24663 -14.19698 -14.06316 -13.74146 -13.61977 -13.14765 -12.96041 -12.86633 -12.84666 -12.80301 -12.68347 -12.29216 -12.11000 -12.04547 -11.96488 -11.63614 -11.26387 -11.02825 -10.86605 -10.62082 -10.42254 -10.15710 -9.68017 -9.63776 -9.33039 -9.16895 -8.59815 -8.01829 -7.79536 -7.42899 -6.51568 -4.12328 1.14143 1.66140 2.47735 2.59142 2.88872 3.06145 3.12915 3.24210 3.30629 3.42193 3.62608 4.14910 4.18081 4.39799 4.48970 4.66658 4.71407 4.89396 4.94449 5.01882 5.12340 5.24834 5.30137 5.33244 5.43957 5.55532 5.63923 5.68886 5.88561 5.91903 6.06405 6.17723 6.26237 6.31548 6.36110 6.41496 6.63495 6.64718 6.97912 7.34625 7.44749 7.55903 7.71799 8.06889 8.07665 8.28074 8.37090 8.97284 9.34081 9.70233 10.56796 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016330 B = 0.003913 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.172236 B = 7153.067537 C = 8192.005865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.158 4.158 3 C 0.212 3.788 4 N -0.455 5.455 5 C -0.343 4.343 6 H 0.109 0.891 7 C 0.073 3.927 8 N -0.849 5.849 9 Si 0.857 3.143 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.255 1.255 13 C 0.559 3.441 14 O -0.595 6.595 15 C -0.171 4.171 16 C -0.118 4.118 17 C -0.013 4.013 18 C -0.073 4.073 19 N -0.379 5.379 20 C 0.244 3.756 21 C -0.228 4.228 22 C -0.023 4.023 23 C -0.073 4.073 24 O 0.110 5.890 25 N -0.361 5.361 26 C 0.080 3.920 27 C -0.085 4.085 28 H 0.209 0.791 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.276 0.724 32 H 0.187 0.813 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.177 0.823 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 -0.638 17.001 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.159 4.159 3 C 0.090 3.910 4 N -0.175 5.175 5 C -0.470 4.470 6 H 0.126 0.874 7 C -0.136 4.136 8 N -0.482 5.482 9 Si 0.682 3.318 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.179 1.179 13 C 0.351 3.649 14 O -0.481 6.481 15 C -0.180 4.180 16 C -0.141 4.141 17 C -0.116 4.116 18 C -0.130 4.130 19 N -0.062 5.062 20 C -0.003 4.003 21 C -0.251 4.251 22 C -0.087 4.087 23 C -0.130 4.130 24 O 0.043 5.957 25 N -0.067 5.067 26 C -0.030 4.030 27 C -0.142 4.142 28 H 0.226 0.774 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.204 0.796 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.195 0.805 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.509 -0.691 16.728 16.810 hybrid contribution -0.310 0.620 -0.441 0.821 sum 1.199 -0.071 16.287 16.331 Atomic orbital electron populations 1.24605 0.95617 1.02724 1.02669 1.23908 0.95056 0.98427 0.98554 1.18815 0.83273 0.93780 0.95113 1.43356 1.56918 1.11907 1.05284 1.19105 1.32897 0.83063 1.11954 0.87390 1.25439 0.96442 0.96514 0.95217 1.69845 1.36599 1.28295 1.13476 0.87258 0.83051 0.83659 0.77822 1.19618 1.20826 1.17939 1.17459 0.79679 0.85192 0.82611 1.90593 1.54797 1.25454 1.77274 1.20148 1.09084 0.97993 0.90819 1.23199 0.99007 0.93803 0.98073 1.20532 1.09072 0.95948 0.86024 1.20203 0.99383 0.91184 1.02256 1.40112 1.48506 1.17019 1.00514 1.20364 0.90581 1.02493 0.86902 1.22360 1.02719 1.09989 0.89998 1.24338 0.85722 1.00115 0.98488 1.20365 1.02551 1.04429 0.85688 1.84881 1.32009 1.63554 1.15259 1.74138 1.19863 1.21497 0.91192 1.20337 1.00854 0.88483 0.93375 1.20503 0.99873 0.95950 0.97885 0.77368 0.89503 0.88956 0.91392 0.79589 0.91519 0.92976 0.89787 0.80511 0.89148 0.89590 0.88797 0.91174 0.92896 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.63 19.25 29.55 0.57 -4.06 16 2 C -0.16 -3.51 13.64 -37.12 -0.51 -4.02 16 3 C 0.21 4.87 3.92 -6.83 -0.03 4.84 16 4 N -0.46 -11.23 1.93 -119.24 -0.23 -11.46 16 5 C -0.34 -8.78 6.60 -14.99 -0.10 -8.88 16 6 H 0.11 2.93 6.28 -52.49 -0.33 2.60 16 7 C 0.07 1.85 5.09 -17.46 -0.09 1.76 16 8 N -0.85 -22.49 13.96 55.50 0.77 -21.71 16 9 Si 0.86 19.56 26.64 -169.99 -4.53 15.03 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.26 -5.62 5.48 56.52 0.31 -5.31 16 13 C 0.56 13.70 7.56 -12.63 -0.10 13.61 16 14 O -0.60 -15.00 14.50 5.22 0.08 -14.93 16 15 C -0.17 -3.86 6.12 -103.35 -0.63 -4.49 16 16 C -0.12 -2.55 8.99 -37.50 -0.34 -2.89 16 17 C -0.01 -0.25 6.82 -81.75 -0.56 -0.81 16 18 C -0.07 -1.16 9.72 36.00 0.35 -0.81 16 19 N -0.38 -7.04 2.93 -54.14 -0.16 -7.20 16 20 C 0.24 3.86 6.60 -154.53 -1.02 2.84 16 21 C -0.23 -2.71 9.88 -39.21 -0.39 -3.09 16 22 C -0.02 -0.22 7.48 -35.36 -0.26 -0.48 16 23 C -0.07 -0.33 10.45 36.01 0.38 0.05 16 24 O 0.11 1.36 11.19 17.09 0.19 1.55 16 25 N -0.36 -5.59 11.77 31.24 0.37 -5.22 16 26 C 0.08 1.58 6.86 -81.47 -0.56 1.02 16 27 C -0.08 -1.40 9.04 36.01 0.33 -1.07 16 28 H 0.21 3.08 7.80 -54.10 -0.42 2.66 16 29 H 0.09 1.92 7.61 -51.93 -0.40 1.53 16 30 H 0.09 2.07 5.06 -51.93 -0.26 1.81 16 31 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.19 4.31 5.28 -52.49 -0.28 4.03 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.78 7.91 -51.93 -0.41 0.37 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.75 7.35 -51.93 -0.38 0.37 16 42 H 0.10 1.92 6.36 -51.93 -0.33 1.59 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -31.63 359.50 -6.04 -37.67 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.00 Total: 7.34 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.95 Total: -6.49 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.75 Total: -45.59 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.27 Total: -13.38 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.53 Total: 15.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.63 -6.04 -37.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282115607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.777 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds