Wall clock time and date at job start Tue Mar 31 2020 14:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86803 * 119.99960 * 2 1 4 4 H 1.48507 * 109.47327 * 270.00354 * 3 2 1 5 5 H 1.48501 * 109.46981 * 30.00006 * 3 2 1 6 6 H 1.48498 * 109.47050 * 150.00088 * 3 2 1 7 7 C 1.38664 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99653 * 179.97438 * 7 2 1 9 9 O 1.34799 * 120.00228 * 359.97438 * 7 2 1 10 10 C 1.35698 * 117.00111 * 185.06188 * 9 7 2 11 11 C 1.39406 * 120.39163 * 354.54773 * 10 9 7 12 12 C 1.38243 * 118.45066 * 179.70779 * 11 10 9 13 13 C 1.39411 * 119.14391 * 0.52698 * 12 11 10 14 14 C 1.48320 * 119.64127 * 179.72869 * 13 12 11 15 15 C 1.40005 * 120.87068 * 4.73569 * 14 13 12 16 16 C 1.37805 * 119.18652 * 179.97438 * 15 14 13 17 17 N 1.32017 * 120.98150 * 0.02562 * 16 15 14 18 18 C 1.32431 * 121.91636 * 359.97438 * 17 16 15 19 19 N 1.39040 * 119.64765 * 179.72269 * 18 17 16 20 20 C 1.47010 * 111.00290 * 123.63283 * 19 18 17 21 21 C 1.53095 * 109.26003 * 177.60749 * 20 19 18 22 22 O 1.43013 * 109.25908 * 56.84342 * 21 20 19 23 23 C 1.43012 * 113.74123 * 301.33323 * 22 21 20 24 24 C 1.47014 * 110.99709 * 359.97438 * 19 18 17 25 25 C 1.38941 * 120.70536 * 359.97438 * 18 17 16 26 26 N 1.32677 * 120.70740 * 359.46110 * 13 12 11 27 27 C 1.31613 * 121.69107 * 0.26967 * 26 13 12 28 28 H 0.97002 * 119.99745 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.77294 * 359.97438 * 11 10 9 30 30 H 1.07997 * 120.42933 * 180.25377 * 12 11 10 31 31 H 1.08001 * 120.40801 * 359.94690 * 15 14 13 32 32 H 1.07991 * 119.51125 * 180.02562 * 16 15 14 33 33 H 1.09001 * 109.50546 * 297.54334 * 20 19 18 34 34 H 1.08999 * 109.50465 * 57.66814 * 20 19 18 35 35 H 1.09003 * 109.50133 * 296.91166 * 21 20 19 36 36 H 1.08995 * 109.54555 * 176.80876 * 21 20 19 37 37 H 1.08999 * 109.50765 * 298.73518 * 23 22 21 38 38 H 1.08999 * 109.54155 * 178.62382 * 23 22 21 39 39 H 1.08997 * 109.51015 * 302.32342 * 24 19 18 40 40 H 1.08995 * 109.50766 * 62.46241 * 24 19 18 41 41 H 1.07992 * 120.53027 * 179.97438 * 25 18 17 42 42 H 1.08001 * 119.60930 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0466 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3348 -2.3683 -0.0005 10 6 2.0698 -3.5040 0.1056 11 6 3.4626 -3.4463 0.0947 12 6 4.1717 -4.6273 0.2115 13 6 3.4746 -5.8293 0.3243 14 6 4.2243 -7.1035 0.4441 15 6 5.6207 -7.1087 0.5445 16 6 6.2821 -8.3127 0.6549 17 7 5.6186 -9.4539 0.6666 18 6 4.2982 -9.4971 0.5742 19 7 3.6477 -10.7259 0.5854 20 6 2.6502 -10.7842 1.6637 21 6 1.9183 -12.1275 1.6025 22 8 2.8726 -13.1891 1.6897 23 6 3.8588 -13.1633 0.6544 24 6 4.6105 -11.8305 0.7056 25 6 3.5563 -8.3278 0.4609 26 7 2.1480 -5.8452 0.3310 27 6 1.4428 -4.7388 0.2271 28 1 -0.4850 0.8401 0.0004 29 1 3.9758 -2.5005 0.0015 30 1 5.2516 -4.6193 0.2108 31 1 6.1729 -6.1806 0.5350 32 1 7.3591 -8.3228 0.7330 33 1 3.1498 -10.6855 2.6275 34 1 1.9329 -9.9728 1.5402 35 1 1.3748 -12.2031 0.6607 36 1 1.2172 -12.1990 2.4340 37 1 3.3717 -13.2690 -0.3150 38 1 4.5618 -13.9834 0.8000 39 1 5.3237 -11.7828 -0.1172 40 1 5.1417 -11.7487 1.6538 41 1 2.4797 -8.3664 0.3853 42 1 0.3640 -4.7907 0.2367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243899708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:53 Heat of formation + Delta-G solvation = 17.685401 kcal Electronic energy + Delta-G solvation = -26275.188559 eV Core-core repulsion = 22414.580730 eV Total energy + Delta-G solvation = -3860.607829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.82052 -39.78390 -38.97633 -37.39819 -35.82720 -33.13458 -32.50044 -31.68809 -31.39428 -30.41760 -28.84114 -27.04425 -25.92282 -24.67763 -23.38347 -23.29756 -22.02046 -21.44755 -20.38949 -18.39863 -17.94932 -17.18243 -16.73200 -16.21661 -15.91969 -15.64613 -15.42582 -15.16464 -15.12345 -14.73434 -14.66570 -14.28993 -14.20963 -13.88343 -13.66153 -13.44363 -12.98710 -12.61448 -12.54259 -12.45468 -11.99240 -11.86936 -11.68603 -11.60317 -11.41509 -11.24139 -10.92816 -10.67874 -10.30132 -9.98846 -9.86832 -9.65943 -9.43923 -9.22906 -8.97672 -8.93435 -8.13937 -7.44938 -6.76790 -4.32210 0.94976 1.26466 1.91498 2.29295 2.96429 2.97560 3.02583 3.28278 3.60796 3.71529 3.89955 4.36600 4.49970 4.53140 4.65309 4.74844 4.83311 4.87972 4.94945 4.99762 5.03502 5.12733 5.18949 5.27866 5.36375 5.39436 5.40071 5.57088 5.59442 5.67777 5.73109 5.77052 5.81939 5.94334 6.07562 6.32946 6.39449 6.49233 6.59689 6.74118 6.83547 6.84737 7.03536 7.13538 7.28556 7.65473 8.05770 8.57135 8.67124 9.29480 10.38827 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.027773 B = 0.002249 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.928195 B =12449.691256 C =13343.831313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.043 3.957 3 Si 0.947 3.053 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.394 4.394 8 H 0.097 0.903 9 O -0.153 6.153 10 C 0.112 3.888 11 C -0.207 4.207 12 C -0.087 4.087 13 C 0.022 3.978 14 C 0.064 3.936 15 C -0.201 4.201 16 C 0.122 3.878 17 N -0.533 5.533 18 C 0.303 3.697 19 N -0.475 5.475 20 C 0.021 3.979 21 C 0.064 3.936 22 O -0.386 6.386 23 C 0.060 3.940 24 C 0.032 3.968 25 C -0.165 4.165 26 N -0.425 5.425 27 C 0.036 3.964 28 H 0.276 0.724 29 H 0.140 0.860 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.154 0.846 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.143 0.857 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.456 -16.921 1.840 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.470 4.470 8 H 0.114 0.886 9 O -0.052 6.052 10 C 0.053 3.947 11 C -0.232 4.232 12 C -0.108 4.108 13 C -0.111 4.111 14 C 0.055 3.945 15 C -0.222 4.222 16 C -0.034 4.034 17 N -0.248 5.248 18 C 0.073 3.927 19 N -0.194 5.194 20 C -0.106 4.106 21 C -0.013 4.013 22 O -0.305 6.305 23 C -0.017 4.017 24 C -0.095 4.095 25 C -0.188 4.188 26 N -0.134 5.134 27 C -0.129 4.129 28 H 0.086 0.914 29 H 0.157 0.843 30 H 0.141 0.859 31 H 0.152 0.848 32 H 0.171 0.829 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.161 0.839 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.752 -18.490 1.678 20.119 hybrid contribution 0.939 2.944 0.153 3.094 sum 8.692 -15.546 1.831 17.905 Atomic orbital electron populations 1.70026 1.06148 1.28549 1.43050 1.25422 0.95958 0.99228 0.95783 0.85620 0.78997 0.79318 0.79051 1.19508 1.19899 1.18911 1.21465 0.92101 0.80481 1.52908 0.88591 1.83943 1.34522 1.11555 1.75152 1.20576 0.91043 0.89337 0.93787 1.21460 0.93856 0.99039 1.08869 1.21685 0.99920 0.92019 0.97143 1.18865 0.89464 0.91027 1.11729 1.18691 0.92071 0.91660 0.92032 1.22019 0.94004 0.99811 1.06415 1.22258 0.99574 0.86831 0.94733 1.67431 1.08390 1.30878 1.18116 1.19619 0.88657 0.89635 0.94810 1.59403 1.15405 1.00933 1.43671 1.22979 0.95218 1.00299 0.92086 1.22702 0.90841 0.84770 1.02960 1.87986 1.41856 1.49517 1.51113 1.22784 0.90841 0.96740 0.91371 1.22622 0.94136 0.89387 1.03339 1.21584 1.01740 0.90274 1.05170 1.67261 1.07081 1.29958 1.09111 1.21762 0.99740 0.85193 1.06244 0.91362 0.84278 0.85904 0.84812 0.82907 0.92844 0.88299 0.91848 0.87833 0.92246 0.88138 0.88719 0.92431 0.83886 0.82770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.93 13.67 55.48 0.76 -22.17 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.95 18.81 29.55 -169.99 -5.02 13.79 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.39 -10.07 9.50 30.89 0.29 -9.77 16 8 H 0.10 2.24 5.25 -52.48 -0.28 1.96 16 9 O -0.15 -3.99 9.76 0.30 0.00 -3.99 16 10 C 0.11 2.50 6.67 -38.86 -0.26 2.24 16 11 C -0.21 -4.13 9.25 -39.14 -0.36 -4.49 16 12 C -0.09 -1.53 9.47 -39.14 -0.37 -1.90 16 13 C 0.02 0.41 6.73 -82.92 -0.56 -0.15 16 14 C 0.06 1.03 5.90 -104.62 -0.62 0.41 16 15 C -0.20 -2.68 9.48 -39.08 -0.37 -3.05 16 16 C 0.12 1.53 11.16 -17.63 -0.20 1.33 16 17 N -0.53 -7.46 8.69 -12.52 -0.11 -7.57 16 18 C 0.30 4.35 6.40 -155.03 -0.99 3.36 16 19 N -0.48 -5.93 4.75 -172.94 -0.82 -6.75 16 20 C 0.02 0.22 5.40 -3.71 -0.02 0.20 16 21 C 0.06 0.59 7.01 37.21 0.26 0.85 16 22 O -0.39 -4.12 10.83 -35.23 -0.38 -4.51 16 23 C 0.06 0.54 7.01 37.21 0.26 0.80 16 24 C 0.03 0.35 4.82 -3.71 -0.02 0.34 16 25 C -0.16 -2.54 8.77 -38.86 -0.34 -2.88 16 26 N -0.42 -8.30 9.52 -9.60 -0.09 -8.39 16 27 C 0.04 0.74 11.14 -17.35 -0.19 0.55 16 28 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.14 2.67 5.75 -52.48 -0.30 2.37 16 30 H 0.12 1.72 6.29 -52.49 -0.33 1.39 16 31 H 0.13 1.51 6.33 -52.49 -0.33 1.17 16 32 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.04 6.83 -51.93 -0.35 0.68 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.04 7.86 -51.93 -0.41 0.63 16 40 H 0.06 0.68 8.03 -51.93 -0.42 0.26 16 41 H 0.14 2.23 6.77 -52.49 -0.36 1.88 16 42 H 0.16 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 350.54 15.07 5.28 5.28 Total: -1.00 -29.74 350.54 -8.83 -38.57 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.87 Total: 6.91 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -3.58 Total: -11.17 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.26 Total: -44.88 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.38 Total: -8.50 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.74 -8.83 -38.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243899708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.254 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds