Wall clock time and date at job start Tue Mar 31 2020 14:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86803 * 119.99960 * 2 1 4 4 H 1.48507 * 109.47327 * 270.00354 * 3 2 1 5 5 H 1.48501 * 109.46981 * 30.00006 * 3 2 1 6 6 H 1.48498 * 109.47050 * 150.00088 * 3 2 1 7 7 C 1.38664 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99653 * 179.97438 * 7 2 1 9 9 O 1.34799 * 120.00228 * 359.97438 * 7 2 1 10 10 C 1.35698 * 117.00111 * 185.06188 * 9 7 2 11 11 C 1.39406 * 120.39163 * 354.54773 * 10 9 7 12 12 C 1.38243 * 118.45066 * 179.70779 * 11 10 9 13 13 C 1.39411 * 119.14391 * 0.52698 * 12 11 10 14 14 C 1.48320 * 119.64127 * 179.72869 * 13 12 11 15 15 C 1.40005 * 120.87068 * 4.73569 * 14 13 12 16 16 C 1.37805 * 119.18652 * 179.97438 * 15 14 13 17 17 N 1.32017 * 120.98150 * 0.02562 * 16 15 14 18 18 C 1.32431 * 121.91636 * 359.97438 * 17 16 15 19 19 N 1.39040 * 119.64765 * 179.72269 * 18 17 16 20 20 C 1.47010 * 111.00290 * 123.63283 * 19 18 17 21 21 C 1.53095 * 109.26003 * 177.60749 * 20 19 18 22 22 O 1.43013 * 109.25908 * 56.84342 * 21 20 19 23 23 C 1.43012 * 113.74123 * 301.33323 * 22 21 20 24 24 C 1.47014 * 110.99709 * 359.97438 * 19 18 17 25 25 C 1.38941 * 120.70536 * 359.97438 * 18 17 16 26 26 N 1.32677 * 120.70740 * 359.46110 * 13 12 11 27 27 C 1.31613 * 121.69107 * 0.26967 * 26 13 12 28 28 H 0.97002 * 119.99745 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.77294 * 359.97438 * 11 10 9 30 30 H 1.07997 * 120.42933 * 180.25377 * 12 11 10 31 31 H 1.08001 * 120.40801 * 359.94690 * 15 14 13 32 32 H 1.07991 * 119.51125 * 180.02562 * 16 15 14 33 33 H 1.09001 * 109.50546 * 297.54334 * 20 19 18 34 34 H 1.08999 * 109.50465 * 57.66814 * 20 19 18 35 35 H 1.09003 * 109.50133 * 296.91166 * 21 20 19 36 36 H 1.08995 * 109.54555 * 176.80876 * 21 20 19 37 37 H 1.08999 * 109.50765 * 298.73518 * 23 22 21 38 38 H 1.08999 * 109.54155 * 178.62382 * 23 22 21 39 39 H 1.08997 * 109.51015 * 302.32342 * 24 19 18 40 40 H 1.08995 * 109.50766 * 62.46241 * 24 19 18 41 41 H 1.07992 * 120.53027 * 179.97438 * 25 18 17 42 42 H 1.08001 * 119.60930 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0466 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3348 -2.3683 -0.0005 10 6 2.0698 -3.5040 0.1056 11 6 3.4626 -3.4463 0.0947 12 6 4.1717 -4.6273 0.2115 13 6 3.4746 -5.8293 0.3243 14 6 4.2243 -7.1035 0.4441 15 6 5.6207 -7.1087 0.5445 16 6 6.2821 -8.3127 0.6549 17 7 5.6186 -9.4539 0.6666 18 6 4.2982 -9.4971 0.5742 19 7 3.6477 -10.7259 0.5854 20 6 2.6502 -10.7842 1.6637 21 6 1.9183 -12.1275 1.6025 22 8 2.8726 -13.1891 1.6897 23 6 3.8588 -13.1633 0.6544 24 6 4.6105 -11.8305 0.7056 25 6 3.5563 -8.3278 0.4609 26 7 2.1480 -5.8452 0.3310 27 6 1.4428 -4.7388 0.2271 28 1 -0.4850 0.8401 0.0004 29 1 3.9758 -2.5005 0.0015 30 1 5.2516 -4.6193 0.2108 31 1 6.1729 -6.1806 0.5350 32 1 7.3591 -8.3228 0.7330 33 1 3.1498 -10.6855 2.6275 34 1 1.9329 -9.9728 1.5402 35 1 1.3748 -12.2031 0.6607 36 1 1.2172 -12.1990 2.4340 37 1 3.3717 -13.2690 -0.3150 38 1 4.5618 -13.9834 0.8000 39 1 5.3237 -11.7828 -0.1172 40 1 5.1417 -11.7487 1.6538 41 1 2.4797 -8.3664 0.3853 42 1 0.3640 -4.7907 0.2367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243899708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:52 Heat of formation + Delta-G solvation = -1.458056 kcal Electronic energy + Delta-G solvation = -26276.018681 eV Core-core repulsion = 22414.580730 eV Total energy + Delta-G solvation = -3861.437952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.91870 -41.26541 -40.01093 -39.00155 -36.77818 -34.63290 -34.03890 -33.17177 -32.29204 -31.46954 -30.33369 -27.96555 -27.64765 -25.73283 -24.74344 -24.57167 -23.23830 -22.65868 -21.41361 -20.07102 -19.30698 -18.61419 -17.87014 -17.16514 -17.11483 -16.78957 -16.62217 -16.28924 -16.20579 -16.00517 -15.93178 -15.77482 -15.27842 -15.20629 -14.95481 -14.62391 -14.38900 -14.16884 -13.98492 -13.64197 -13.38269 -13.08038 -12.84192 -12.77725 -12.49988 -12.39819 -12.15941 -11.74996 -11.70800 -11.31296 -11.13240 -10.86638 -10.64593 -10.55452 -10.51274 -10.45626 -9.16800 -9.05960 -8.57002 -6.24114 -0.36701 0.18254 0.32430 0.86487 1.36095 1.45335 1.53487 2.11325 2.31453 2.66712 2.88350 2.91335 3.04547 3.16593 3.36809 3.48645 3.72694 3.82149 3.91402 3.99538 4.05614 4.09561 4.13745 4.21563 4.25700 4.29255 4.32336 4.40016 4.53893 4.69290 4.71965 4.75800 4.82561 4.87465 4.93137 4.94556 4.97706 5.21008 5.29323 5.42063 5.48290 5.59077 5.72201 5.87420 6.07652 6.10504 6.85419 6.97775 6.99751 7.56654 8.63926 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.027773 B = 0.002249 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.928195 B =12449.691256 C =13343.831313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.016 4.016 3 Si 1.020 2.980 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.418 4.418 8 H 0.111 0.889 9 O -0.205 6.205 10 C 0.085 3.915 11 C -0.201 4.201 12 C -0.084 4.084 13 C 0.042 3.958 14 C 0.036 3.964 15 C -0.190 4.190 16 C 0.127 3.873 17 N -0.536 5.536 18 C 0.298 3.702 19 N -0.483 5.483 20 C 0.022 3.978 21 C 0.066 3.934 22 O -0.400 6.400 23 C 0.061 3.939 24 C 0.037 3.963 25 C -0.173 4.173 26 N -0.435 5.435 27 C 0.026 3.974 28 H 0.277 0.723 29 H 0.148 0.852 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.194 0.806 33 H 0.045 0.955 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.123 0.877 37 H 0.064 0.936 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.133 0.867 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.050 -18.727 2.067 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.215 4.215 3 Si 0.839 3.161 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.494 4.494 8 H 0.128 0.872 9 O -0.108 6.108 10 C 0.030 3.970 11 C -0.227 4.227 12 C -0.103 4.103 13 C -0.093 4.093 14 C 0.027 3.973 15 C -0.212 4.212 16 C -0.030 4.030 17 N -0.252 5.252 18 C 0.067 3.933 19 N -0.202 5.202 20 C -0.104 4.104 21 C -0.010 4.010 22 O -0.319 6.319 23 C -0.015 4.015 24 C -0.090 4.090 25 C -0.197 4.197 26 N -0.145 5.145 27 C -0.136 4.136 28 H 0.086 0.914 29 H 0.165 0.835 30 H 0.187 0.813 31 H 0.180 0.820 32 H 0.211 0.789 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.141 0.859 37 H 0.083 0.917 38 H 0.141 0.859 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.151 0.849 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.348 -20.360 1.908 23.387 hybrid contribution 0.072 2.951 0.113 2.954 sum 11.420 -17.410 2.020 20.919 Atomic orbital electron populations 1.70164 1.08131 1.29386 1.46737 1.26655 0.96835 1.02872 0.95176 0.84558 0.77970 0.74206 0.79373 1.18730 1.19755 1.17218 1.21941 0.92915 0.80877 1.53644 0.87205 1.83941 1.35746 1.12424 1.78676 1.20982 0.92418 0.89082 0.94540 1.21714 0.92970 1.00503 1.07493 1.22086 1.02107 0.90413 0.95712 1.19516 0.89203 0.92701 1.07926 1.18755 0.93391 0.90524 0.94589 1.22324 0.92645 1.01513 1.04671 1.22943 1.01331 0.85896 0.92787 1.67553 1.08100 1.31819 1.17701 1.19766 0.88924 0.90002 0.94561 1.59429 1.15863 1.00748 1.44111 1.23015 0.94856 1.01394 0.91165 1.22801 0.90655 0.83439 1.04147 1.87974 1.42287 1.49832 1.51761 1.22897 0.90899 0.96373 0.91352 1.22642 0.94016 0.89708 1.02675 1.21574 1.01482 0.90920 1.05681 1.67358 1.08120 1.29307 1.09691 1.21886 1.00267 0.85165 1.06308 0.91388 0.83494 0.81347 0.82005 0.78943 0.93642 0.88538 0.91340 0.85890 0.91731 0.85904 0.88794 0.93418 0.84926 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.20 13.67 21.62 0.30 -51.91 16 2 C -0.02 -0.82 5.49 84.84 0.47 -0.35 16 3 Si 1.02 39.27 29.55 68.60 2.03 41.30 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 7 C -0.42 -22.23 9.50 67.92 0.64 -21.59 16 8 H 0.11 5.20 5.25 -2.91 -0.02 5.18 16 9 O -0.20 -11.34 9.76 -21.85 -0.21 -11.56 16 10 C 0.09 3.93 6.67 22.74 0.15 4.09 16 11 C -0.20 -7.86 9.25 22.55 0.21 -7.65 16 12 C -0.08 -2.69 9.47 22.55 0.21 -2.48 16 13 C 0.04 1.45 6.73 41.98 0.28 1.73 16 14 C 0.04 1.07 5.90 -19.87 -0.12 0.95 16 15 C -0.19 -4.25 9.48 22.60 0.21 -4.03 16 16 C 0.13 2.60 11.16 84.56 0.94 3.54 16 17 N -0.54 -13.37 8.69 -193.51 -1.68 -15.06 16 18 C 0.30 8.00 6.40 132.99 0.85 8.85 16 19 N -0.48 -11.33 4.75 -701.05 -3.33 -14.66 16 20 C 0.02 0.45 5.40 86.31 0.47 0.92 16 21 C 0.07 1.11 7.01 72.01 0.50 1.61 16 22 O -0.40 -7.73 10.83 -148.98 -1.61 -9.35 16 23 C 0.06 0.98 7.01 72.02 0.50 1.49 16 24 C 0.04 0.73 4.82 86.32 0.42 1.14 16 25 C -0.17 -5.12 8.77 22.74 0.20 -4.92 16 26 N -0.44 -17.00 9.52 -184.29 -1.75 -18.75 16 27 C 0.03 1.11 11.14 84.91 0.95 2.06 16 28 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.15 5.48 5.75 -2.91 -0.02 5.46 16 30 H 0.17 3.84 6.29 -2.91 -0.02 3.82 16 31 H 0.16 2.66 6.33 -2.91 -0.02 2.64 16 32 H 0.19 2.39 8.06 -2.92 -0.02 2.36 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 2.00 6.83 -2.39 -0.02 1.98 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.86 7.86 -2.39 -0.02 1.84 16 40 H 0.05 1.04 8.03 -2.39 -0.02 1.02 16 41 H 0.13 4.13 6.77 -2.91 -0.02 4.11 16 42 H 0.16 6.37 8.06 -2.91 -0.02 6.34 16 Total: -1.00 -68.39 350.54 1.69 -66.70 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 1.06 Total: 27.92 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 6.90 Total: -14.64 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -6.47 Total: -100.37 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -1.83 Total: -20.90 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -68.39 1.69 -66.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243899708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.237 kcal (2) G-P(sol) polarization free energy of solvation -68.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds