Wall clock time and date at job start Tue Mar 31 2020 15:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30353 * 125.99800 * 2 1 4 4 N 1.39908 * 109.03360 * 179.97438 * 3 2 1 5 5 C 1.46506 * 125.70045 * 179.97438 * 4 3 2 6 6 C 1.34136 * 108.59572 * 359.75149 * 4 3 2 7 7 C 1.50699 * 126.32847 * 180.24445 * 6 4 3 8 8 C 1.38587 * 107.34173 * 0.39349 * 6 4 3 9 9 C 1.46978 * 126.48484 * 179.86930 * 8 6 4 10 10 O 1.21448 * 119.99401 * 84.74873 * 9 8 6 11 11 C 1.49097 * 119.99947 * 264.74919 * 9 8 6 12 12 O 1.21410 * 120.00686 * 5.04319 * 11 9 8 13 13 N 1.34785 * 119.99491 * 185.04694 * 11 9 8 14 14 C 1.38913 * 119.99402 * 184.02572 * 13 11 9 15 15 C 1.39583 * 119.84041 * 324.33390 * 14 13 11 16 16 C 1.36320 * 120.16396 * 179.76164 * 15 14 13 17 17 C 1.40929 * 119.82863 * 0.54334 * 16 15 14 18 18 C 1.41040 * 120.15587 * 179.69792 * 17 16 15 19 19 H 1.08007 * 119.99828 * 214.01135 * 18 17 16 20 20 C 1.40008 * 120.00062 * 34.00691 * 18 17 16 21 21 N 1.30810 * 120.00182 * 5.74259 * 20 18 17 22 22 Si 1.86808 * 119.99947 * 185.74214 * 20 18 17 23 23 H 1.48499 * 109.46863 * 59.99948 * 22 20 18 24 24 H 1.48489 * 109.47113 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47190 * 300.00226 * 22 20 18 26 26 C 1.40926 * 119.68416 * 359.71343 * 17 16 15 27 27 C 1.36312 * 119.83567 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.47187 * 274.97539 * 1 2 3 29 29 H 1.08998 * 109.47161 * 34.98101 * 1 2 3 30 30 H 1.09004 * 109.46879 * 154.97948 * 1 2 3 31 31 H 1.08999 * 109.46761 * 89.97754 * 5 4 3 32 32 H 1.08997 * 109.46694 * 209.97456 * 5 4 3 33 33 H 1.08995 * 109.47398 * 329.97900 * 5 4 3 34 34 H 1.09004 * 109.47244 * 270.17668 * 7 6 4 35 35 H 1.08998 * 109.47518 * 30.17830 * 7 6 4 36 36 H 1.09001 * 109.47144 * 150.18012 * 7 6 4 37 37 H 0.96992 * 119.99956 * 4.02056 * 13 11 9 38 38 H 1.07997 * 119.92088 * 0.02562 * 15 14 13 39 39 H 1.07991 * 120.08435 * 180.25520 * 16 15 14 40 40 H 0.96997 * 120.00184 * 180.02562 * 21 20 18 41 41 H 1.08007 * 120.08379 * 179.97438 * 26 17 16 42 42 H 1.08003 * 119.91710 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2732 1.0546 0.0000 4 7 3.6114 0.6464 0.0006 5 6 4.7763 1.5349 0.0002 6 6 3.6496 -0.6944 0.0065 7 6 4.8886 -1.5522 0.0143 8 6 2.3391 -1.1450 0.0006 9 6 1.8968 -2.5467 0.0011 10 8 1.8005 -3.1525 1.0493 11 6 1.5665 -3.2247 -1.2850 12 8 1.7498 -2.6502 -2.3388 13 7 1.0644 -4.4755 -1.2778 14 6 0.8351 -5.1387 -2.4767 15 6 0.3950 -4.4246 -3.5923 16 6 0.1726 -5.0679 -4.7734 17 6 0.3772 -6.4594 -4.8631 18 6 0.1430 -7.1330 -6.0799 19 1 -0.2387 -8.1433 -6.0731 20 6 0.4054 -6.4920 -7.2966 21 7 0.9720 -5.3130 -7.3060 22 14 -0.0537 -7.3204 -8.9068 23 1 -1.5182 -7.5640 -8.9381 24 1 0.3268 -6.4416 -10.0417 25 1 0.6659 -8.6144 -9.0205 26 6 0.8165 -7.1746 -3.7310 27 6 1.0399 -6.5170 -2.5581 28 1 -0.3633 0.0891 1.0238 29 1 -0.3633 0.8420 -0.5891 30 1 -0.3633 -0.9313 -0.4347 31 1 5.0646 1.7562 1.0278 32 1 5.6051 1.0470 -0.5127 33 1 4.5257 2.4624 -0.5146 34 1 5.1926 -1.7609 -1.0115 35 1 5.6913 -1.0265 0.5313 36 1 4.6781 -2.4899 0.5287 37 1 0.8633 -4.9125 -0.4356 38 1 0.2343 -3.3590 -3.5208 39 1 -0.1640 -4.5135 -5.6368 40 1 1.1534 -4.8687 -8.1489 41 1 0.9749 -8.2412 -3.7924 42 1 1.3762 -7.0639 -1.6896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016234993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:55 Heat of formation + Delta-G solvation = 32.168630 kcal Electronic energy + Delta-G solvation = -26747.168548 eV Core-core repulsion = 22887.188759 eV Total energy + Delta-G solvation = -3859.979789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.60498 -40.06393 -38.44590 -37.13271 -34.62606 -34.39716 -32.94149 -32.26217 -29.76221 -29.60583 -29.14260 -28.15437 -26.24310 -25.52930 -23.95256 -21.73464 -21.26619 -20.24322 -19.68069 -19.11215 -17.73033 -17.31669 -16.87475 -16.29862 -15.90472 -15.48453 -15.32148 -14.93069 -14.32366 -14.13303 -13.95165 -13.70556 -13.61560 -13.45255 -13.29727 -12.93954 -12.82267 -12.68653 -12.64055 -12.18768 -12.14630 -12.09484 -11.80887 -11.57769 -11.33789 -11.14992 -10.98961 -10.71360 -10.54652 -9.97077 -9.86811 -9.40744 -9.29500 -9.06199 -8.78131 -8.57227 -7.58195 -6.97208 -6.68891 -4.35600 1.05095 1.55916 2.18630 2.35326 2.64883 3.02403 3.08055 3.10503 3.11061 3.26997 3.50405 3.95059 4.22067 4.29918 4.59368 4.66828 4.73358 4.82305 4.87672 5.08459 5.10791 5.15275 5.22270 5.50107 5.55200 5.58155 5.62412 5.75643 5.86273 6.10901 6.33243 6.39455 6.67613 6.71722 6.78523 6.98483 7.02424 7.15366 7.23258 7.51354 7.56415 7.62277 7.85730 8.03412 8.10627 8.26111 8.54751 8.62380 8.86838 8.94784 10.25439 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.002733 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.957777 B =10241.892046 C =10716.422840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.124 3.876 3 N -0.298 5.298 4 N -0.361 5.361 5 C 0.098 3.902 6 C 0.137 3.863 7 C -0.101 4.101 8 C -0.298 4.298 9 C 0.443 3.557 10 O -0.423 6.423 11 C 0.458 3.542 12 O -0.489 6.489 13 N -0.622 5.622 14 C -0.009 4.009 15 C -0.087 4.087 16 C -0.145 4.145 17 C 0.109 3.891 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.071 3.929 21 N -0.800 5.800 22 Si 0.913 3.087 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.207 4.207 27 C -0.103 4.103 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.403 0.597 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.281 0.719 41 H 0.098 0.902 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.723 9.906 13.213 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.042 4.042 3 N -0.120 5.120 4 N -0.140 5.140 5 C -0.043 4.043 6 C 0.006 3.994 7 C -0.160 4.160 8 C -0.311 4.311 9 C 0.312 3.688 10 O -0.292 6.292 11 C 0.241 3.759 12 O -0.364 6.364 13 N -0.266 5.266 14 C -0.102 4.102 15 C -0.107 4.107 16 C -0.165 4.165 17 C 0.107 3.893 18 C -0.493 4.493 19 H 0.095 0.905 20 C -0.145 4.145 21 N -0.426 5.426 22 Si 0.738 3.262 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.227 4.227 27 C -0.123 4.123 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.238 0.762 38 H 0.125 0.875 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.081 11.580 12.874 18.352 hybrid contribution 0.014 -1.303 -0.466 1.384 sum 6.095 10.277 12.408 17.225 Atomic orbital electron populations 1.20282 0.86018 1.04083 1.03291 1.22239 0.96729 0.88518 0.96762 1.77012 0.85814 1.22299 1.26850 1.48043 1.05927 1.03933 1.56119 1.21929 0.84218 0.94585 1.03542 1.21336 0.95716 0.84691 0.97695 1.20607 0.92223 0.98688 1.04435 1.19908 0.92639 0.94182 1.24367 1.21898 0.72484 0.86211 0.88230 1.90559 1.37694 1.66070 1.34882 1.20593 0.81151 0.83584 0.90560 1.90782 1.50372 1.63887 1.31393 1.42833 1.59996 1.14566 1.09254 1.17231 1.15230 0.91466 0.86226 1.20574 0.98782 0.98653 0.92678 1.21027 1.04100 0.95351 0.95997 1.17713 0.87536 0.92077 0.91999 1.19488 1.38898 1.00781 0.90118 0.90459 1.25916 0.92862 0.94560 1.01200 1.69767 1.30625 1.13181 1.29036 0.86291 0.79960 0.79794 0.80167 1.18924 1.20377 1.19086 1.20675 1.09350 0.98662 0.94020 1.20111 1.02355 0.92277 0.97518 0.89987 0.89937 0.90401 0.90477 0.89178 0.88804 0.88910 0.90285 0.89397 0.76194 0.87456 0.86138 0.90812 0.88354 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.32 36.01 0.37 -0.55 16 2 C 0.12 1.82 7.27 -81.96 -0.60 1.23 16 3 N -0.30 -4.32 12.48 33.93 0.42 -3.90 16 4 N -0.36 -4.41 3.97 -63.22 -0.25 -4.66 16 5 C 0.10 0.68 11.05 59.85 0.66 1.34 16 6 C 0.14 1.77 7.02 -81.46 -0.57 1.20 16 7 C -0.10 -0.95 9.70 36.00 0.35 -0.60 16 8 C -0.30 -4.54 5.46 -104.97 -0.57 -5.11 16 9 C 0.44 7.03 6.30 -31.54 -0.20 6.83 16 10 O -0.42 -6.72 17.25 5.41 0.09 -6.63 16 11 C 0.46 8.51 7.68 -11.75 -0.09 8.42 16 12 O -0.49 -10.75 14.10 5.44 0.08 -10.67 16 13 N -0.62 -11.42 5.28 -10.25 -0.05 -11.48 16 14 C -0.01 -0.20 6.29 -83.65 -0.53 -0.73 16 15 C -0.09 -2.12 8.60 -39.77 -0.34 -2.47 16 16 C -0.14 -3.81 8.57 -39.25 -0.34 -4.14 16 17 C 0.11 2.88 5.51 -106.80 -0.59 2.29 16 18 C -0.46 -12.11 9.03 -37.86 -0.34 -12.45 16 19 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 20 C 0.07 1.80 5.31 -17.32 -0.09 1.70 16 21 N -0.80 -21.01 10.94 55.55 0.61 -20.40 16 22 Si 0.91 18.71 29.57 -169.99 -5.03 13.69 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 C -0.21 -4.92 9.74 -39.26 -0.38 -5.30 16 27 C -0.10 -2.22 9.90 -39.77 -0.39 -2.61 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.43 7.63 -51.93 -0.40 0.03 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.49 7.71 -51.93 -0.40 0.09 16 36 H 0.09 0.84 7.98 -51.93 -0.41 0.43 16 37 H 0.40 6.22 8.30 -40.82 -0.34 5.88 16 38 H 0.11 2.61 6.25 -52.49 -0.33 2.28 16 39 H 0.12 3.30 6.44 -52.49 -0.34 2.96 16 40 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 41 H 0.10 2.17 8.06 -52.48 -0.42 1.74 16 42 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -32.61 367.85 -7.37 -39.98 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.13 Total: 9.47 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -3.65 Total: -10.94 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.73 Total: -40.43 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.17 Total: -17.30 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.61 -7.37 -39.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016234993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.144 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds