Wall clock time and date at job start Tue Mar 31 2020 15:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30353 * 125.99800 * 2 1 4 4 N 1.39908 * 109.03360 * 179.97438 * 3 2 1 5 5 C 1.46506 * 125.70045 * 179.97438 * 4 3 2 6 6 C 1.34136 * 108.59572 * 359.75149 * 4 3 2 7 7 C 1.50699 * 126.32847 * 180.24445 * 6 4 3 8 8 C 1.38587 * 107.34173 * 0.39349 * 6 4 3 9 9 C 1.46978 * 126.48484 * 179.86930 * 8 6 4 10 10 O 1.21448 * 119.99401 * 84.74873 * 9 8 6 11 11 C 1.49097 * 119.99947 * 264.74919 * 9 8 6 12 12 O 1.21410 * 120.00686 * 5.04319 * 11 9 8 13 13 N 1.34785 * 119.99491 * 185.04694 * 11 9 8 14 14 C 1.38913 * 119.99402 * 184.02572 * 13 11 9 15 15 C 1.39583 * 119.84041 * 324.33390 * 14 13 11 16 16 C 1.36320 * 120.16396 * 179.76164 * 15 14 13 17 17 C 1.40929 * 119.82863 * 0.54334 * 16 15 14 18 18 C 1.41040 * 120.15587 * 179.69792 * 17 16 15 19 19 H 1.08007 * 119.99828 * 214.01135 * 18 17 16 20 20 C 1.40008 * 120.00062 * 34.00691 * 18 17 16 21 21 N 1.30810 * 120.00182 * 5.74259 * 20 18 17 22 22 Si 1.86808 * 119.99947 * 185.74214 * 20 18 17 23 23 H 1.48499 * 109.46863 * 59.99948 * 22 20 18 24 24 H 1.48489 * 109.47113 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47190 * 300.00226 * 22 20 18 26 26 C 1.40926 * 119.68416 * 359.71343 * 17 16 15 27 27 C 1.36312 * 119.83567 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.47187 * 274.97539 * 1 2 3 29 29 H 1.08998 * 109.47161 * 34.98101 * 1 2 3 30 30 H 1.09004 * 109.46879 * 154.97948 * 1 2 3 31 31 H 1.08999 * 109.46761 * 89.97754 * 5 4 3 32 32 H 1.08997 * 109.46694 * 209.97456 * 5 4 3 33 33 H 1.08995 * 109.47398 * 329.97900 * 5 4 3 34 34 H 1.09004 * 109.47244 * 270.17668 * 7 6 4 35 35 H 1.08998 * 109.47518 * 30.17830 * 7 6 4 36 36 H 1.09001 * 109.47144 * 150.18012 * 7 6 4 37 37 H 0.96992 * 119.99956 * 4.02056 * 13 11 9 38 38 H 1.07997 * 119.92088 * 0.02562 * 15 14 13 39 39 H 1.07991 * 120.08435 * 180.25520 * 16 15 14 40 40 H 0.96997 * 120.00184 * 180.02562 * 21 20 18 41 41 H 1.08007 * 120.08379 * 179.97438 * 26 17 16 42 42 H 1.08003 * 119.91710 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2732 1.0546 0.0000 4 7 3.6114 0.6464 0.0006 5 6 4.7763 1.5349 0.0002 6 6 3.6496 -0.6944 0.0065 7 6 4.8886 -1.5522 0.0143 8 6 2.3391 -1.1450 0.0006 9 6 1.8968 -2.5467 0.0011 10 8 1.8005 -3.1525 1.0493 11 6 1.5665 -3.2247 -1.2850 12 8 1.7498 -2.6502 -2.3388 13 7 1.0644 -4.4755 -1.2778 14 6 0.8351 -5.1387 -2.4767 15 6 0.3950 -4.4246 -3.5923 16 6 0.1726 -5.0679 -4.7734 17 6 0.3772 -6.4594 -4.8631 18 6 0.1430 -7.1330 -6.0799 19 1 -0.2387 -8.1433 -6.0731 20 6 0.4054 -6.4920 -7.2966 21 7 0.9720 -5.3130 -7.3060 22 14 -0.0537 -7.3204 -8.9068 23 1 -1.5182 -7.5640 -8.9381 24 1 0.3268 -6.4416 -10.0417 25 1 0.6659 -8.6144 -9.0205 26 6 0.8165 -7.1746 -3.7310 27 6 1.0399 -6.5170 -2.5581 28 1 -0.3633 0.0891 1.0238 29 1 -0.3633 0.8420 -0.5891 30 1 -0.3633 -0.9313 -0.4347 31 1 5.0646 1.7562 1.0278 32 1 5.6051 1.0470 -0.5127 33 1 4.5257 2.4624 -0.5146 34 1 5.1926 -1.7609 -1.0115 35 1 5.6913 -1.0265 0.5313 36 1 4.6781 -2.4899 0.5287 37 1 0.8633 -4.9125 -0.4356 38 1 0.2343 -3.3590 -3.5208 39 1 -0.1640 -4.5135 -5.6368 40 1 1.1534 -4.8687 -8.1489 41 1 0.9749 -8.2412 -3.7924 42 1 1.3762 -7.0639 -1.6896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016234993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:54 Heat of formation + Delta-G solvation = 11.993232 kcal Electronic energy + Delta-G solvation = -26748.043419 eV Core-core repulsion = 22887.188759 eV Total energy + Delta-G solvation = -3860.854660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.64262 -41.52307 -39.91960 -38.87330 -36.31243 -35.34951 -34.73294 -33.18231 -31.49908 -30.97014 -30.57933 -29.19487 -27.51461 -26.76900 -25.37624 -23.35040 -22.96274 -21.77133 -20.65035 -20.46259 -19.24917 -19.07690 -18.23002 -17.63913 -17.08963 -16.83856 -16.74021 -16.26232 -15.76656 -15.72703 -15.30891 -14.91826 -14.58559 -14.48911 -14.45922 -14.18386 -14.09797 -13.99317 -13.65836 -13.51297 -13.50439 -13.40518 -12.97662 -12.91237 -12.81804 -12.73501 -12.67891 -12.31154 -11.83748 -11.78364 -11.63188 -11.16878 -10.75029 -10.47147 -10.22699 -9.62228 -9.48225 -8.83464 -8.55435 -6.31994 -0.29841 0.58343 0.85243 1.12781 1.23165 1.39664 1.40387 1.49905 1.52537 1.87376 1.98240 2.23775 2.79748 3.18471 3.41987 3.44838 3.69059 3.84347 3.96740 4.19575 4.27476 4.37331 4.41300 4.45538 4.51652 4.60645 4.64278 4.67270 4.80785 4.89510 4.91567 4.96025 5.06260 5.11741 5.26908 5.36567 5.40272 5.55185 5.69206 5.85676 5.88968 6.00102 6.10497 6.31930 6.50493 6.51771 6.67080 6.93082 6.95045 7.11926 8.40750 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.002733 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.957777 B =10241.892046 C =10716.422840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.110 3.890 3 N -0.322 5.322 4 N -0.358 5.358 5 C 0.085 3.915 6 C 0.141 3.859 7 C -0.101 4.101 8 C -0.339 4.339 9 C 0.464 3.536 10 O -0.420 6.420 11 C 0.462 3.538 12 O -0.525 6.525 13 N -0.615 5.615 14 C 0.003 3.997 15 C -0.098 4.098 16 C -0.167 4.167 17 C 0.078 3.922 18 C -0.496 4.496 19 H 0.082 0.918 20 C 0.027 3.973 21 N -0.839 5.839 22 Si 0.987 3.013 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.258 1.258 26 C -0.213 4.213 27 C -0.096 4.096 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.421 0.579 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.285 0.715 41 H 0.115 0.885 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.133 9.601 14.715 18.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.056 4.056 3 N -0.144 5.144 4 N -0.137 5.137 5 C -0.054 4.054 6 C 0.008 3.992 7 C -0.159 4.159 8 C -0.353 4.353 9 C 0.333 3.667 10 O -0.289 6.289 11 C 0.246 3.754 12 O -0.401 6.401 13 N -0.261 5.261 14 C -0.090 4.090 15 C -0.118 4.118 16 C -0.187 4.187 17 C 0.075 3.925 18 C -0.526 4.526 19 H 0.100 0.900 20 C -0.186 4.186 21 N -0.466 5.466 22 Si 0.808 3.192 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.182 1.182 26 C -0.233 4.233 27 C -0.116 4.116 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.104 0.896 37 H 0.259 0.741 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.133 0.867 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.494 11.286 14.431 19.794 hybrid contribution -0.331 -1.085 -0.755 1.363 sum 7.163 10.201 13.676 18.504 Atomic orbital electron populations 1.20360 0.84891 1.03881 1.04593 1.22628 0.97837 0.88485 0.96693 1.76943 0.87123 1.22641 1.27711 1.48486 1.06253 1.04386 1.54535 1.22402 0.83139 0.94327 1.05552 1.21869 0.96126 0.85387 0.95810 1.20766 0.91729 0.98424 1.05016 1.20011 0.94127 0.93550 1.27570 1.21390 0.72211 0.86466 0.86678 1.90556 1.37732 1.66308 1.34325 1.21177 0.79827 0.83088 0.91323 1.90771 1.51614 1.64653 1.33108 1.42748 1.59942 1.14627 1.08826 1.17282 1.13096 0.91920 0.86688 1.20593 0.99485 0.98471 0.93278 1.20903 1.05909 0.95827 0.96035 1.18049 0.88733 0.92292 0.93393 1.19779 1.40432 1.01372 0.91006 0.89956 1.26826 0.92144 0.94982 1.04625 1.69869 1.31914 1.14774 1.30076 0.85173 0.79775 0.78805 0.75446 1.18303 1.19772 1.18199 1.20940 1.08776 0.99561 0.93992 1.20455 1.00848 0.92049 0.98240 0.88042 0.89212 0.91313 0.88179 0.86586 0.88377 0.88728 0.86574 0.89634 0.74120 0.88199 0.88511 0.90489 0.86714 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 10.32 71.24 0.73 -1.11 16 2 C 0.11 3.18 7.27 43.59 0.32 3.50 16 3 N -0.32 -9.09 12.48 -46.56 -0.58 -9.67 16 4 N -0.36 -8.09 3.97 -353.94 -1.41 -9.50 16 5 C 0.08 0.93 11.05 127.77 1.41 2.34 16 6 C 0.14 3.42 7.02 42.29 0.30 3.72 16 7 C -0.10 -1.63 9.70 71.24 0.69 -0.94 16 8 C -0.34 -10.08 5.46 -20.09 -0.11 -10.19 16 9 C 0.46 14.29 6.30 27.48 0.17 14.46 16 10 O -0.42 -12.65 17.25 -3.55 -0.06 -12.71 16 11 C 0.46 16.96 7.68 87.16 0.67 17.63 16 12 O -0.52 -23.41 14.10 -3.43 -0.05 -23.46 16 13 N -0.61 -21.83 5.28 -304.67 -1.61 -23.44 16 14 C 0.00 0.14 6.29 38.67 0.24 0.39 16 15 C -0.10 -4.95 8.60 22.15 0.19 -4.75 16 16 C -0.17 -9.17 8.57 22.48 0.19 -8.98 16 17 C 0.08 4.20 5.51 -21.27 -0.12 4.08 16 18 C -0.50 -26.60 9.03 23.39 0.21 -26.39 16 19 H 0.08 4.16 7.85 -2.91 -0.02 4.13 16 20 C 0.03 1.40 5.31 85.27 0.45 1.85 16 21 N -0.84 -45.79 10.94 21.84 0.24 -45.56 16 22 Si 0.99 38.82 29.57 68.60 2.03 40.85 16 23 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 24 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 25 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 26 C -0.21 -10.00 9.74 22.48 0.22 -9.79 16 27 C -0.10 -3.98 9.90 22.14 0.22 -3.76 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 1.69 7.90 -2.39 -0.02 1.67 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.12 0.68 7.63 -2.39 -0.02 0.66 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.12 0.97 7.71 -2.39 -0.02 0.95 16 36 H 0.08 1.44 7.98 -2.39 -0.02 1.42 16 37 H 0.42 12.04 8.30 -92.71 -0.77 11.27 16 38 H 0.10 5.09 6.25 -2.91 -0.02 5.07 16 39 H 0.10 5.67 6.44 -2.92 -0.02 5.65 16 40 H 0.28 14.26 8.30 -92.71 -0.77 13.49 16 41 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 42 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -73.28 367.85 4.66 -68.62 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.30 Total: 32.81 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 5.80 Total: -17.94 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -3.36 Total: -88.17 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.11 Total: -36.17 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -73.28 4.66 -68.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016234993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.614 kcal (2) G-P(sol) polarization free energy of solvation -73.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds