Wall clock time and date at job start Tue Mar 31 2020 15:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30091 * 124.95237 * 2 1 4 4 C 1.35871 * 109.66459 * 180.02562 * 3 2 1 5 5 C 1.39771 * 133.48508 * 179.97438 * 4 3 2 6 6 C 1.38064 * 119.94702 * 180.02562 * 5 4 3 7 7 C 1.39545 * 120.26747 * 359.95123 * 6 5 4 8 8 C 1.38315 * 120.22663 * 0.11886 * 7 6 5 9 9 C 1.38795 * 120.00345 * 359.61270 * 8 7 6 10 10 N 1.36096 * 124.96373 * 180.02562 * 2 1 3 11 11 C 1.46501 * 126.35440 * 359.96974 * 10 2 1 12 12 C 1.52997 * 109.47600 * 90.02195 * 11 10 2 13 13 H 1.09004 * 109.46881 * 54.99574 * 12 11 10 14 14 C 1.47201 * 109.47013 * 295.00411 * 12 11 10 15 15 N 3.53055 * 60.41646 * 238.19496 * 2 1 3 16 16 C 1.52997 * 109.47504 * 174.99935 * 12 11 10 17 17 C 1.50701 * 109.47212 * 184.99949 * 16 12 11 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 12 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 12 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17 24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17 25 25 O 1.36208 * 120.68759 * 180.20608 * 7 6 5 26 26 C 1.43162 * 116.70579 * 342.69204 * 25 7 6 27 27 C 1.53461 * 108.24700 * 46.38985 * 26 25 7 28 28 O 1.36243 * 119.07307 * 179.81873 * 6 5 4 29 29 H 1.09001 * 109.47186 * 269.95703 * 1 2 3 30 30 H 1.09000 * 109.47334 * 29.95452 * 1 2 3 31 31 H 1.09001 * 109.47260 * 149.95896 * 1 2 3 32 32 H 1.08005 * 120.03212 * 0.02590 * 5 4 3 33 33 H 1.07998 * 120.00190 * 179.91291 * 8 7 6 34 34 H 1.09003 * 109.47017 * 330.02349 * 11 10 2 35 35 H 1.08998 * 109.46949 * 210.02536 * 11 10 2 36 36 H 1.09002 * 109.47153 * 64.99951 * 16 12 11 37 37 H 1.09001 * 109.46832 * 305.00142 * 16 12 11 38 38 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 39 39 H 1.08999 * 109.70592 * 286.69445 * 26 25 7 40 40 H 1.09003 * 109.70579 * 166.07271 * 26 25 7 41 41 H 1.08998 * 109.70224 * 180.34311 * 27 26 25 42 42 H 1.08990 * 109.74075 * 59.74015 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2522 1.0663 0.0000 4 6 3.5629 0.7080 -0.0006 5 6 4.7581 1.4326 -0.0013 6 6 5.9676 0.7670 -0.0023 7 6 6.0028 -0.6281 -0.0016 8 6 4.8256 -1.3542 -0.0023 9 6 3.6038 -0.6956 0.0043 10 7 2.2869 -1.1153 -0.0005 11 6 1.8176 -2.5032 -0.0005 12 6 1.6541 -2.9864 -1.4429 13 1 2.5908 -2.8442 -1.9821 14 6 0.5873 -2.2145 -2.1010 15 7 -0.2360 -1.6181 -2.6093 16 6 1.2848 -4.4711 -1.4447 17 6 1.2440 -4.9769 -2.8637 18 1 1.4603 -4.3065 -3.6824 19 6 0.9316 -6.2958 -3.1168 20 7 0.6687 -7.1122 -2.1199 21 14 0.8818 -6.9228 -4.8757 22 1 1.2140 -5.8142 -5.8061 23 1 1.8710 -8.0185 -5.0387 24 1 -0.4785 -7.4346 -5.1804 25 8 7.1912 -1.2935 0.0017 26 6 8.3500 -0.5427 -0.3763 27 6 8.3174 0.7988 0.3684 28 8 7.1218 1.4910 -0.0067 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3634 0.8904 -0.5131 31 1 -0.3634 -0.8896 -0.5145 32 1 4.7356 2.5124 -0.0010 33 1 4.8570 -2.4337 -0.0032 34 1 0.8581 -2.5623 0.5134 35 1 2.5443 -3.1324 0.5133 36 1 0.3058 -4.6026 -0.9839 37 1 2.0302 -5.0315 -0.8805 38 1 0.4486 -8.0399 -2.2979 39 1 8.3391 -0.3665 -1.4519 40 1 9.2501 -1.0932 -0.1025 41 1 9.1882 1.3934 0.0926 42 1 8.3181 0.6228 1.4440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042755537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:07 Heat of formation + Delta-G solvation = 23.710977 kcal Electronic energy + Delta-G solvation = -27264.414347 eV Core-core repulsion = 23404.067807 eV Total energy + Delta-G solvation = -3860.346540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.23831 -40.92909 -37.36791 -37.28817 -36.04964 -34.66695 -33.38352 -31.68135 -31.40082 -29.93129 -29.82218 -27.20323 -26.64551 -24.70552 -24.06762 -22.40255 -22.04535 -21.12744 -20.04732 -18.45201 -18.31544 -17.15558 -17.02898 -16.64692 -16.12583 -15.96517 -15.45494 -15.04769 -14.66604 -14.57413 -14.48340 -14.09911 -13.95192 -13.67482 -13.36385 -13.17253 -13.07814 -12.85728 -12.72383 -12.37750 -12.32674 -12.12344 -11.88617 -11.46755 -11.29285 -11.24312 -11.00748 -10.84086 -10.67761 -10.53828 -10.23105 -10.20870 -9.88378 -9.71681 -9.38619 -8.58343 -7.90278 -7.75700 -6.22497 -4.26555 0.88143 1.40824 2.48772 2.73949 2.91778 3.14109 3.21091 3.29936 3.32463 3.34896 3.42608 3.77916 4.03265 4.28437 4.31028 4.40368 4.50015 4.58159 4.65004 4.68297 4.91086 5.08406 5.13359 5.16250 5.17884 5.21971 5.31406 5.42079 5.47753 5.51534 5.56371 5.67033 5.89366 6.01338 6.07319 6.17778 6.22041 6.40194 6.62249 6.77733 7.18123 7.21018 7.29035 7.30812 7.71853 7.95960 8.05952 8.15664 8.77330 9.40232 10.88154 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.003528 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.456768 B = 7935.328170 C = 9525.552477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.297 3.703 3 N -0.497 5.497 4 C 0.057 3.943 5 C -0.070 4.070 6 C 0.047 3.953 7 C 0.069 3.931 8 C -0.104 4.104 9 C 0.060 3.940 10 N -0.484 5.484 11 C 0.113 3.887 12 C -0.010 4.010 13 H 0.108 0.892 14 C 0.235 3.765 15 N -0.454 5.454 16 C 0.035 3.965 17 C -0.530 4.530 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.282 1.282 25 O -0.304 6.304 26 C 0.022 3.978 27 C 0.022 3.978 28 O -0.308 6.308 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.917 12.314 8.974 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.032 3.968 3 N -0.218 5.218 4 C -0.061 4.061 5 C -0.090 4.090 6 C 0.000 4.000 7 C 0.023 3.977 8 C -0.125 4.125 9 C -0.049 4.049 10 N -0.174 5.174 11 C -0.010 4.010 12 C -0.032 4.032 13 H 0.126 0.874 14 C -0.082 4.082 15 N -0.131 5.131 16 C -0.004 4.004 17 C -0.568 4.568 18 H 0.076 0.924 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.208 1.208 25 O -0.218 6.218 26 C -0.054 4.054 27 C -0.054 4.054 28 O -0.222 6.222 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.378 13.734 8.247 19.649 hybrid contribution 0.829 -1.669 -0.894 2.067 sum 12.208 12.065 7.353 18.672 Atomic orbital electron populations 1.20600 0.84434 1.05565 1.04028 1.23590 0.95663 0.80552 0.97020 1.70409 1.00293 1.27268 1.23781 1.18536 0.91697 0.89829 1.06065 1.19116 0.86422 0.99883 1.03574 1.18332 0.86689 0.88624 1.06346 1.18264 0.86022 0.89021 1.04431 1.18901 0.86523 1.00126 1.06959 1.18298 0.85161 0.94512 1.06937 1.45506 1.04041 1.07776 1.60099 1.22160 1.02711 0.78201 0.97880 1.19694 0.93815 0.97920 0.91799 0.87389 1.28994 0.94038 0.91916 0.93219 1.81081 1.11342 1.11885 1.08756 1.19184 0.98403 0.83823 0.98992 1.21094 1.48582 0.95316 0.91777 0.92422 1.24929 0.94687 0.96820 0.97316 1.69929 1.46549 1.05428 1.30819 0.86518 0.77845 0.78976 0.84681 1.19658 1.20717 1.20844 1.86328 1.13296 1.37693 1.84529 1.23627 0.88285 0.93312 1.00191 1.23598 0.87332 0.94392 1.00044 1.86315 1.13755 1.37168 1.85003 0.89378 0.88641 0.89617 0.84311 0.84144 0.88009 0.86939 0.95116 0.93914 0.92664 0.90436 0.86120 0.86246 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.69 36.00 0.35 -0.78 16 2 C 0.30 4.54 7.33 -154.79 -1.13 3.40 16 3 N -0.50 -8.35 11.28 -8.22 -0.09 -8.44 16 4 C 0.06 0.92 7.22 -84.68 -0.61 0.31 16 5 C -0.07 -1.00 10.00 -39.07 -0.39 -1.40 16 6 C 0.05 0.63 6.48 -39.16 -0.25 0.38 16 7 C 0.07 0.93 6.49 -39.07 -0.25 0.68 16 8 C -0.10 -1.45 9.94 -39.35 -0.39 -1.84 16 9 C 0.06 0.92 6.87 -83.95 -0.58 0.34 16 10 N -0.48 -7.11 2.67 -111.14 -0.30 -7.41 16 11 C 0.11 1.51 5.24 -4.04 -0.02 1.49 16 12 C -0.01 -0.17 2.42 -93.41 -0.23 -0.39 16 13 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 14 C 0.23 4.47 11.29 -20.74 -0.23 4.24 16 15 N -0.45 -9.22 17.33 42.18 0.73 -8.49 16 16 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 17 C -0.53 -13.41 8.60 -34.44 -0.30 -13.71 16 18 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 21 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 O -0.30 -3.65 10.41 -33.03 -0.34 -4.00 16 26 C 0.02 0.17 7.26 37.40 0.27 0.44 16 27 C 0.02 0.17 7.26 37.40 0.27 0.44 16 28 O -0.31 -3.61 10.41 -33.14 -0.34 -3.95 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.20 4.40 -51.93 -0.23 0.97 16 32 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 33 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.10 1.20 7.62 -51.93 -0.40 0.81 16 35 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -31.89 357.67 -8.19 -40.08 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.23 Total: -1.15 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -3.72 Total: -4.16 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 1.08 Total: -47.88 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.69 Total: -7.95 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.89 -8.19 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042755537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.792 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds