Wall clock time and date at job start Tue Mar 31 2020 15:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30091 * 124.95237 * 2 1 4 4 C 1.35871 * 109.66459 * 180.02562 * 3 2 1 5 5 C 1.39771 * 133.48508 * 179.97438 * 4 3 2 6 6 C 1.38064 * 119.94702 * 180.02562 * 5 4 3 7 7 C 1.39545 * 120.26747 * 359.95123 * 6 5 4 8 8 C 1.38315 * 120.22663 * 0.11886 * 7 6 5 9 9 C 1.38795 * 120.00345 * 359.61270 * 8 7 6 10 10 N 1.36096 * 124.96373 * 180.02562 * 2 1 3 11 11 C 1.46501 * 126.35440 * 359.96974 * 10 2 1 12 12 C 1.52997 * 109.47600 * 90.02195 * 11 10 2 13 13 H 1.09004 * 109.46881 * 54.99574 * 12 11 10 14 14 C 1.47201 * 109.47013 * 295.00411 * 12 11 10 15 15 N 3.53055 * 60.41646 * 238.19496 * 2 1 3 16 16 C 1.52997 * 109.47504 * 174.99935 * 12 11 10 17 17 C 1.50701 * 109.47212 * 184.99949 * 16 12 11 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 12 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 12 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17 24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17 25 25 O 1.36208 * 120.68759 * 180.20608 * 7 6 5 26 26 C 1.43162 * 116.70579 * 342.69204 * 25 7 6 27 27 C 1.53461 * 108.24700 * 46.38985 * 26 25 7 28 28 O 1.36243 * 119.07307 * 179.81873 * 6 5 4 29 29 H 1.09001 * 109.47186 * 269.95703 * 1 2 3 30 30 H 1.09000 * 109.47334 * 29.95452 * 1 2 3 31 31 H 1.09001 * 109.47260 * 149.95896 * 1 2 3 32 32 H 1.08005 * 120.03212 * 0.02590 * 5 4 3 33 33 H 1.07998 * 120.00190 * 179.91291 * 8 7 6 34 34 H 1.09003 * 109.47017 * 330.02349 * 11 10 2 35 35 H 1.08998 * 109.46949 * 210.02536 * 11 10 2 36 36 H 1.09002 * 109.47153 * 64.99951 * 16 12 11 37 37 H 1.09001 * 109.46832 * 305.00142 * 16 12 11 38 38 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 39 39 H 1.08999 * 109.70592 * 286.69445 * 26 25 7 40 40 H 1.09003 * 109.70579 * 166.07271 * 26 25 7 41 41 H 1.08998 * 109.70224 * 180.34311 * 27 26 25 42 42 H 1.08990 * 109.74075 * 59.74015 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2522 1.0663 0.0000 4 6 3.5629 0.7080 -0.0006 5 6 4.7581 1.4326 -0.0013 6 6 5.9676 0.7670 -0.0023 7 6 6.0028 -0.6281 -0.0016 8 6 4.8256 -1.3542 -0.0023 9 6 3.6038 -0.6956 0.0043 10 7 2.2869 -1.1153 -0.0005 11 6 1.8176 -2.5032 -0.0005 12 6 1.6541 -2.9864 -1.4429 13 1 2.5908 -2.8442 -1.9821 14 6 0.5873 -2.2145 -2.1010 15 7 -0.2360 -1.6181 -2.6093 16 6 1.2848 -4.4711 -1.4447 17 6 1.2440 -4.9769 -2.8637 18 1 1.4603 -4.3065 -3.6824 19 6 0.9316 -6.2958 -3.1168 20 7 0.6687 -7.1122 -2.1199 21 14 0.8818 -6.9228 -4.8757 22 1 1.2140 -5.8142 -5.8061 23 1 1.8710 -8.0185 -5.0387 24 1 -0.4785 -7.4346 -5.1804 25 8 7.1912 -1.2935 0.0017 26 6 8.3500 -0.5427 -0.3763 27 6 8.3174 0.7988 0.3684 28 8 7.1218 1.4910 -0.0067 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3634 0.8904 -0.5131 31 1 -0.3634 -0.8896 -0.5145 32 1 4.7356 2.5124 -0.0010 33 1 4.8570 -2.4337 -0.0032 34 1 0.8581 -2.5623 0.5134 35 1 2.5443 -3.1324 0.5133 36 1 0.3058 -4.6026 -0.9839 37 1 2.0302 -5.0315 -0.8805 38 1 0.4486 -8.0399 -2.2979 39 1 8.3391 -0.3665 -1.4519 40 1 9.2501 -1.0932 -0.1025 41 1 9.1882 1.3934 0.0926 42 1 8.3181 0.6228 1.4440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042755537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:06 Heat of formation + Delta-G solvation = 5.846079 kcal Electronic energy + Delta-G solvation = -27265.189027 eV Core-core repulsion = 23404.067807 eV Total energy + Delta-G solvation = -3861.121220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.32880 -41.82535 -38.72506 -38.20588 -37.11711 -36.09879 -35.05391 -33.19485 -32.35498 -31.03242 -30.65592 -28.74103 -27.68841 -25.88441 -25.17521 -23.74066 -23.45589 -22.06452 -21.13693 -19.46082 -19.28016 -18.51468 -18.30769 -18.03371 -17.24302 -17.04624 -16.58463 -16.43472 -15.85393 -15.62315 -15.34810 -15.17548 -15.04455 -14.85277 -14.80134 -14.36587 -14.22781 -14.13730 -13.95129 -13.79675 -13.32978 -13.28827 -13.17373 -13.01422 -12.81718 -12.65253 -12.49739 -12.14791 -12.00380 -11.77870 -11.53448 -11.39397 -11.25242 -11.06243 -10.93756 -10.57067 -8.97409 -8.81029 -8.22377 -6.29698 -0.19203 0.34400 1.37183 1.40594 1.42941 1.50845 1.61555 1.83653 1.90208 2.05540 2.28437 2.40082 2.68911 3.02454 3.15046 3.21774 3.30434 3.54123 3.69958 3.80873 3.87582 4.04495 4.09437 4.13113 4.27044 4.31500 4.42524 4.55520 4.56740 4.57483 4.60399 4.65078 4.69685 4.72367 4.92959 5.03109 5.20764 5.30422 5.42255 5.53550 5.56476 5.74996 5.90156 6.07510 6.17400 6.39277 6.63159 6.82356 6.83197 7.39065 8.88077 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.003528 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.456768 B = 7935.328170 C = 9525.552477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.289 3.711 3 N -0.523 5.523 4 C 0.033 3.967 5 C -0.084 4.084 6 C 0.052 3.948 7 C 0.070 3.930 8 C -0.111 4.111 9 C 0.050 3.950 10 N -0.483 5.483 11 C 0.119 3.881 12 C 0.002 3.998 13 H 0.109 0.891 14 C 0.241 3.759 15 N -0.478 5.478 16 C 0.042 3.958 17 C -0.540 4.540 18 H 0.048 0.952 19 C 0.019 3.981 20 N -0.917 5.917 21 Si 0.942 3.058 22 H -0.274 1.274 23 H -0.273 1.273 24 H -0.283 1.283 25 O -0.316 6.316 26 C 0.013 3.987 27 C 0.016 3.984 28 O -0.320 6.320 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.018 0.982 37 H 0.046 0.954 38 H 0.265 0.735 39 H 0.078 0.922 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.658 12.286 9.455 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.024 3.976 3 N -0.245 5.245 4 C -0.085 4.085 5 C -0.104 4.104 6 C 0.005 3.995 7 C 0.023 3.977 8 C -0.132 4.132 9 C -0.059 4.059 10 N -0.174 5.174 11 C -0.003 4.003 12 C -0.020 4.020 13 H 0.127 0.873 14 C -0.076 4.076 15 N -0.156 5.156 16 C 0.004 3.996 17 C -0.578 4.578 18 H 0.066 0.934 19 C -0.181 4.181 20 N -0.556 5.556 21 Si 0.768 3.232 22 H -0.199 1.199 23 H -0.199 1.199 24 H -0.210 1.210 25 O -0.230 6.230 26 C -0.061 4.061 27 C -0.059 4.059 28 O -0.235 6.235 29 H 0.134 0.866 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.161 0.839 33 H 0.170 0.830 34 H 0.139 0.861 35 H 0.155 0.845 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.175 0.825 41 H 0.174 0.826 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.148 13.712 8.725 20.904 hybrid contribution 0.449 -1.606 -1.056 1.974 sum 13.596 12.106 7.668 19.754 Atomic orbital electron populations 1.20646 0.83029 1.04851 1.05655 1.23983 0.96456 0.80524 0.96602 1.70363 1.00948 1.28277 1.24917 1.18819 0.91902 0.90688 1.07071 1.19253 0.86594 1.00239 1.04339 1.18365 0.87173 0.88764 1.05221 1.18363 0.86723 0.89059 1.03531 1.19074 0.86330 1.00759 1.07078 1.18462 0.85696 0.94372 1.07350 1.45485 1.03848 1.07871 1.60156 1.22187 1.04627 0.78034 0.95427 1.19566 0.92923 0.95293 0.94222 0.87283 1.29386 0.93930 0.91576 0.92680 1.81075 1.12117 1.12696 1.09673 1.18982 0.97775 0.86291 0.96588 1.21474 1.47528 0.95224 0.93599 0.93398 1.25573 0.94914 0.97367 1.00207 1.69995 1.47778 1.05690 1.32170 0.85743 0.77772 0.78467 0.81182 1.19908 1.19871 1.20950 1.86315 1.13648 1.38663 1.84417 1.24019 0.87899 0.93773 1.00423 1.23994 0.86662 0.94688 1.00540 1.86303 1.14285 1.37981 1.84900 0.86568 0.88769 0.90716 0.83876 0.82977 0.86108 0.84487 0.96407 0.93610 0.92584 0.90335 0.82538 0.82645 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.07 9.69 71.23 0.69 -1.38 16 2 C 0.29 8.71 7.33 137.91 1.01 9.72 16 3 N -0.52 -17.69 11.28 -179.92 -2.03 -19.72 16 4 C 0.03 1.07 7.22 39.42 0.28 1.36 16 5 C -0.08 -2.43 10.00 22.60 0.23 -2.20 16 6 C 0.05 1.36 6.48 22.54 0.15 1.50 16 7 C 0.07 1.81 6.49 22.60 0.15 1.96 16 8 C -0.11 -2.99 9.94 22.42 0.22 -2.77 16 9 C 0.05 1.50 6.87 38.80 0.27 1.77 16 10 N -0.48 -13.74 2.67 -505.52 -1.35 -15.09 16 11 C 0.12 3.00 5.24 86.38 0.45 3.45 16 12 C 0.00 0.08 2.42 -12.60 -0.03 0.05 16 13 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 14 C 0.24 9.06 11.29 89.43 1.01 10.07 16 15 N -0.48 -19.38 17.33 20.01 0.35 -19.03 16 16 C 0.04 1.76 4.42 29.85 0.13 1.90 16 17 C -0.54 -27.18 8.60 25.60 0.22 -26.96 16 18 H 0.05 2.45 7.59 -2.91 -0.02 2.43 16 19 C 0.02 1.00 5.46 84.66 0.46 1.47 16 20 N -0.92 -49.82 13.29 21.45 0.28 -49.54 16 21 Si 0.94 42.16 29.54 68.60 2.03 44.19 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 25 O -0.32 -6.96 10.41 -83.86 -0.87 -7.83 16 26 C 0.01 0.17 7.26 72.14 0.52 0.70 16 27 C 0.02 0.19 7.26 72.14 0.52 0.72 16 28 O -0.32 -6.99 10.41 -84.26 -0.88 -7.86 16 29 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.09 2.33 8.14 -2.39 -0.02 2.32 16 31 H 0.07 2.03 4.40 -2.39 -0.01 2.02 16 32 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 33 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 34 H 0.12 2.61 7.62 -2.39 -0.02 2.59 16 35 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -68.62 357.67 4.87 -63.75 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.06 Total: 9.80 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 6.29 Total: 1.34 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -2.75 Total: -103.38 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -1.75 Total: -15.69 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -68.62 4.87 -63.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042755537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.592 kcal (2) G-P(sol) polarization free energy of solvation -68.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds