Wall clock time and date at job start Tue Mar 31 2020 15:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30085 * 124.95720 * 2 1 4 4 C 1.35869 * 109.66834 * 179.97438 * 3 2 1 5 5 C 1.39775 * 133.48630 * 179.97438 * 4 3 2 6 6 C 1.38059 * 119.94602 * 180.02562 * 5 4 3 7 7 C 1.39553 * 120.27139 * 359.96327 * 6 5 4 8 8 C 1.38324 * 120.22259 * 0.10837 * 7 6 5 9 9 C 1.38786 * 119.99837 * 359.61939 * 8 7 6 10 10 N 1.36098 * 124.95770 * 179.97438 * 2 1 3 11 11 C 1.46497 * 126.35863 * 0.03625 * 10 2 1 12 12 C 1.53004 * 109.47340 * 90.02802 * 11 10 2 13 13 H 1.09002 * 109.46722 * 304.99747 * 12 11 10 14 14 C 1.47197 * 109.47343 * 64.99796 * 12 11 10 15 15 N 4.71550 * 121.75481 * 220.52570 * 2 1 3 16 16 C 1.53002 * 109.47358 * 184.99844 * 12 11 10 17 17 C 1.50696 * 109.46919 * 174.99744 * 16 12 11 18 18 H 1.07999 * 120.00202 * 359.97438 * 17 16 12 19 19 C 1.37884 * 119.99746 * 180.02562 * 17 16 12 20 20 N 1.31514 * 119.99573 * 0.27650 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47364 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.46883 * 120.00040 * 21 19 17 24 24 H 1.48497 * 109.46870 * 239.99850 * 21 19 17 25 25 O 1.36202 * 120.69025 * 180.20577 * 7 6 5 26 26 C 1.43165 * 116.70926 * 342.68468 * 25 7 6 27 27 C 1.53462 * 108.24296 * 46.38608 * 26 25 7 28 28 O 1.36252 * 119.07666 * 179.82175 * 6 5 4 29 29 H 1.08996 * 109.46828 * 270.03589 * 1 2 3 30 30 H 1.08999 * 109.47039 * 30.03855 * 1 2 3 31 31 H 1.08998 * 109.47050 * 150.03908 * 1 2 3 32 32 H 1.07999 * 120.02777 * 0.03913 * 5 4 3 33 33 H 1.07999 * 119.99893 * 179.91706 * 8 7 6 34 34 H 1.08995 * 109.47692 * 330.02641 * 11 10 2 35 35 H 1.09001 * 109.47316 * 210.02419 * 11 10 2 36 36 H 1.09000 * 109.46497 * 55.00010 * 16 12 11 37 37 H 1.08999 * 109.46623 * 295.00074 * 16 12 11 38 38 H 0.97001 * 120.00651 * 359.71956 * 20 19 17 39 39 H 1.09002 * 109.70706 * 286.70275 * 26 25 7 40 40 H 1.09001 * 109.71161 * 166.07506 * 26 25 7 41 41 H 1.09003 * 109.70426 * 180.34045 * 27 26 25 42 42 H 1.09004 * 109.74017 * 59.75230 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0662 0.0000 4 6 3.5630 0.7079 0.0006 5 6 4.7582 1.4325 0.0004 6 6 5.9677 0.7668 0.0006 7 6 6.0028 -0.6283 0.0018 8 6 4.8255 -1.3545 0.0005 9 6 3.6040 -0.6957 0.0060 10 7 2.2868 -1.1154 0.0005 11 6 1.8175 -2.5032 0.0004 12 6 1.6555 -2.9867 -1.4422 13 1 0.9978 -2.3055 -1.9820 14 6 2.9724 -3.0209 -2.0991 15 7 3.9887 -3.0478 -2.6054 16 6 1.0480 -4.3910 -1.4443 17 6 0.7747 -4.8179 -2.8634 18 1 1.0103 -4.1539 -3.6820 19 6 0.2228 -6.0558 -3.1168 20 7 -0.0700 -6.8617 -2.1196 21 14 -0.1166 -6.5847 -4.8759 22 1 0.2930 -5.5021 -5.8062 23 1 0.6543 -7.8172 -5.1797 24 1 -1.5675 -6.8552 -5.0402 25 8 7.1912 -1.2938 0.0062 26 6 8.3504 -0.5432 -0.3712 27 6 8.3172 0.7986 0.3729 28 8 7.1220 1.4907 -0.0033 29 1 -0.3633 0.0006 1.0276 30 1 -0.3633 0.8896 -0.5144 31 1 -0.3633 -0.8903 -0.5132 32 1 4.7357 2.5122 0.0003 33 1 4.8569 -2.4340 0.0001 34 1 0.8576 -2.5623 0.5133 35 1 2.5437 -3.1324 0.5150 36 1 0.1149 -4.3839 -0.8809 37 1 1.7460 -5.0894 -0.9827 38 1 0.1060 -6.5869 -1.2061 39 1 8.3403 -0.3673 -1.4469 40 1 9.2503 -1.0936 -0.0965 41 1 9.1883 1.3931 0.0976 42 1 8.3172 0.6231 1.4487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042755538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:12 Heat of formation + Delta-G solvation = 16.548380 kcal Electronic energy + Delta-G solvation = -27449.601321 eV Core-core repulsion = 23588.944187 eV Total energy + Delta-G solvation = -3860.657134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.26374 -40.92611 -37.36417 -37.24119 -36.20163 -34.56135 -33.65516 -31.75370 -31.37458 -29.94626 -29.79196 -26.97943 -26.60328 -24.64965 -23.90126 -22.42668 -22.29452 -21.13634 -20.13901 -18.52544 -18.27919 -17.30413 -17.10171 -16.88815 -16.06721 -15.97139 -15.65461 -15.03624 -14.50921 -14.49050 -14.23054 -14.08177 -13.90655 -13.78853 -13.58975 -13.28529 -13.06614 -12.73604 -12.62262 -12.41318 -12.37587 -12.26150 -11.87815 -11.64447 -11.50585 -11.29009 -11.02173 -10.78796 -10.63002 -10.31862 -10.24376 -10.21710 -10.06783 -9.87886 -8.83390 -8.52343 -7.91084 -7.76869 -6.55382 -4.28279 0.87507 1.39634 2.45350 2.71621 2.91093 3.14151 3.35505 3.37944 3.39570 3.45963 3.53831 3.77125 4.03726 4.23460 4.36009 4.40224 4.48025 4.57089 4.63962 4.68897 4.89671 5.05117 5.08465 5.14180 5.22676 5.22905 5.30280 5.33139 5.39550 5.41805 5.54503 5.62540 5.77546 5.94020 6.02397 6.06064 6.20965 6.36304 6.58832 6.78124 6.85825 7.00904 7.14978 7.31058 7.85999 7.91320 8.17117 8.26961 8.66498 9.42618 10.85377 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.003437 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.543599 B = 8143.891415 C = 9429.075464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.292 3.708 3 N -0.495 5.495 4 C 0.058 3.942 5 C -0.071 4.071 6 C 0.048 3.952 7 C 0.072 3.928 8 C -0.098 4.098 9 C 0.060 3.940 10 N -0.485 5.485 11 C 0.112 3.888 12 C 0.000 4.000 13 H 0.109 0.891 14 C 0.228 3.772 15 N -0.446 5.446 16 C 0.021 3.979 17 C -0.608 4.608 18 H 0.052 0.948 19 C 0.024 3.976 20 N -0.906 5.906 21 Si 1.071 2.929 22 H -0.289 1.289 23 H -0.286 1.286 24 H -0.284 1.284 25 O -0.304 6.304 26 C 0.021 3.979 27 C 0.023 3.977 28 O -0.307 6.307 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.033 0.967 37 H 0.020 0.980 38 H 0.270 0.730 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.720 14.550 8.838 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.027 3.973 3 N -0.216 5.216 4 C -0.060 4.060 5 C -0.092 4.092 6 C 0.002 3.998 7 C 0.025 3.975 8 C -0.120 4.120 9 C -0.049 4.049 10 N -0.175 5.175 11 C -0.010 4.010 12 C -0.022 4.022 13 H 0.126 0.874 14 C -0.089 4.089 15 N -0.123 5.123 16 C -0.018 4.018 17 C -0.646 4.646 18 H 0.070 0.930 19 C -0.181 4.181 20 N -0.542 5.542 21 Si 0.899 3.101 22 H -0.214 1.214 23 H -0.212 1.212 24 H -0.210 1.210 25 O -0.218 6.218 26 C -0.054 4.054 27 C -0.053 4.053 28 O -0.222 6.222 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.038 0.962 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.418 13.980 7.153 18.311 hybrid contribution 0.844 0.231 0.977 1.312 sum 10.263 14.210 8.130 19.323 Atomic orbital electron populations 1.20460 0.83990 1.05257 1.04298 1.23677 0.95826 0.80389 0.97412 1.70391 1.00219 1.27279 1.23750 1.18490 0.91742 0.89645 1.06157 1.19109 0.86403 0.99870 1.03774 1.18335 0.86766 0.88526 1.06207 1.18250 0.86004 0.89050 1.04168 1.18851 0.86873 0.99721 1.06561 1.18283 0.85165 0.94572 1.06901 1.45449 1.04065 1.07667 1.60334 1.22147 1.02779 0.78268 0.97835 1.19483 0.87354 1.03611 0.91783 0.87360 1.28827 0.94247 0.92179 0.93665 1.81048 1.12673 1.09707 1.08822 1.19292 0.95702 0.87169 0.99623 1.21953 1.46742 1.04553 0.91378 0.92951 1.25791 0.93484 0.93017 1.05847 1.70764 1.44702 1.38294 1.00395 0.83504 0.76856 0.75803 0.73966 1.21447 1.21226 1.21045 1.86331 1.13291 1.37770 1.84443 1.23633 0.88253 0.93310 1.00254 1.23601 0.87340 0.94376 0.99998 1.86307 1.13753 1.37127 1.84977 0.89265 0.88539 0.89350 0.84200 0.85120 0.86673 0.88575 0.94854 0.96178 0.91970 0.90456 0.86113 0.86169 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.96 36.01 0.36 -0.39 16 2 C 0.29 4.02 7.86 -154.79 -1.22 2.80 16 3 N -0.50 -7.93 11.27 -8.22 -0.09 -8.03 16 4 C 0.06 0.96 7.22 -84.68 -0.61 0.35 16 5 C -0.07 -1.08 10.00 -39.07 -0.39 -1.47 16 6 C 0.05 0.72 6.49 -39.16 -0.25 0.46 16 7 C 0.07 1.12 6.49 -39.06 -0.25 0.87 16 8 C -0.10 -1.63 9.18 -39.35 -0.36 -1.99 16 9 C 0.06 0.98 6.24 -83.95 -0.52 0.46 16 10 N -0.48 -7.06 2.66 -111.13 -0.30 -7.35 16 11 C 0.11 1.50 5.13 -4.04 -0.02 1.48 16 12 C 0.00 0.00 2.42 -93.40 -0.23 -0.22 16 13 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 14 C 0.23 4.64 12.42 -20.77 -0.26 4.38 16 15 N -0.45 -9.87 18.40 42.15 0.78 -9.10 16 16 C 0.02 0.44 3.74 -27.88 -0.10 0.33 16 17 C -0.61 -15.56 8.60 -34.44 -0.30 -15.85 16 18 H 0.05 1.38 7.59 -52.49 -0.40 0.98 16 19 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 20 N -0.91 -25.46 13.65 55.43 0.76 -24.71 16 21 Si 1.07 24.34 29.90 -169.99 -5.08 19.25 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 O -0.30 -4.35 10.41 -33.01 -0.34 -4.69 16 26 C 0.02 0.20 7.26 37.40 0.27 0.48 16 27 C 0.02 0.20 7.25 37.40 0.27 0.47 16 28 O -0.31 -3.93 10.41 -33.17 -0.35 -4.27 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.74 7.65 -51.93 -0.40 0.34 16 32 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.13 2.22 7.99 -52.49 -0.42 1.80 16 34 H 0.12 1.17 7.62 -51.93 -0.40 0.77 16 35 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.03 0.67 8.00 -51.93 -0.42 0.26 16 37 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 38 H 0.27 7.34 7.22 -40.82 -0.29 7.05 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -33.90 361.01 -8.24 -42.13 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.34 Total: -1.35 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -3.71 Total: -7.33 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 1.14 Total: -49.18 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.69 Total: -8.97 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.08 Total: 19.25 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.90 -8.24 -42.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042755538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.682 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds