Wall clock time and date at job start Tue Mar 31 2020 15:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30085 * 124.95720 * 2 1 4 4 C 1.35869 * 109.66834 * 179.97438 * 3 2 1 5 5 C 1.39775 * 133.48630 * 179.97438 * 4 3 2 6 6 C 1.38059 * 119.94602 * 180.02562 * 5 4 3 7 7 C 1.39553 * 120.27139 * 359.96327 * 6 5 4 8 8 C 1.38324 * 120.22259 * 0.10837 * 7 6 5 9 9 C 1.38786 * 119.99837 * 359.61939 * 8 7 6 10 10 N 1.36098 * 124.95770 * 179.97438 * 2 1 3 11 11 C 1.46497 * 126.35863 * 0.03625 * 10 2 1 12 12 C 1.53004 * 109.47340 * 90.02802 * 11 10 2 13 13 H 1.09002 * 109.46722 * 304.99747 * 12 11 10 14 14 C 1.47197 * 109.47343 * 64.99796 * 12 11 10 15 15 N 4.71550 * 121.75481 * 220.52570 * 2 1 3 16 16 C 1.53002 * 109.47358 * 184.99844 * 12 11 10 17 17 C 1.50696 * 109.46919 * 174.99744 * 16 12 11 18 18 H 1.07999 * 120.00202 * 359.97438 * 17 16 12 19 19 C 1.37884 * 119.99746 * 180.02562 * 17 16 12 20 20 N 1.31514 * 119.99573 * 0.27650 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47364 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.46883 * 120.00040 * 21 19 17 24 24 H 1.48497 * 109.46870 * 239.99850 * 21 19 17 25 25 O 1.36202 * 120.69025 * 180.20577 * 7 6 5 26 26 C 1.43165 * 116.70926 * 342.68468 * 25 7 6 27 27 C 1.53462 * 108.24296 * 46.38608 * 26 25 7 28 28 O 1.36252 * 119.07666 * 179.82175 * 6 5 4 29 29 H 1.08996 * 109.46828 * 270.03589 * 1 2 3 30 30 H 1.08999 * 109.47039 * 30.03855 * 1 2 3 31 31 H 1.08998 * 109.47050 * 150.03908 * 1 2 3 32 32 H 1.07999 * 120.02777 * 0.03913 * 5 4 3 33 33 H 1.07999 * 119.99893 * 179.91706 * 8 7 6 34 34 H 1.08995 * 109.47692 * 330.02641 * 11 10 2 35 35 H 1.09001 * 109.47316 * 210.02419 * 11 10 2 36 36 H 1.09000 * 109.46497 * 55.00010 * 16 12 11 37 37 H 1.08999 * 109.46623 * 295.00074 * 16 12 11 38 38 H 0.97001 * 120.00651 * 359.71956 * 20 19 17 39 39 H 1.09002 * 109.70706 * 286.70275 * 26 25 7 40 40 H 1.09001 * 109.71161 * 166.07506 * 26 25 7 41 41 H 1.09003 * 109.70426 * 180.34045 * 27 26 25 42 42 H 1.09004 * 109.74017 * 59.75230 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0662 0.0000 4 6 3.5630 0.7079 0.0006 5 6 4.7582 1.4325 0.0004 6 6 5.9677 0.7668 0.0006 7 6 6.0028 -0.6283 0.0018 8 6 4.8255 -1.3545 0.0005 9 6 3.6040 -0.6957 0.0060 10 7 2.2868 -1.1154 0.0005 11 6 1.8175 -2.5032 0.0004 12 6 1.6555 -2.9867 -1.4422 13 1 0.9978 -2.3055 -1.9820 14 6 2.9724 -3.0209 -2.0991 15 7 3.9887 -3.0478 -2.6054 16 6 1.0480 -4.3910 -1.4443 17 6 0.7747 -4.8179 -2.8634 18 1 1.0103 -4.1539 -3.6820 19 6 0.2228 -6.0558 -3.1168 20 7 -0.0700 -6.8617 -2.1196 21 14 -0.1166 -6.5847 -4.8759 22 1 0.2930 -5.5021 -5.8062 23 1 0.6543 -7.8172 -5.1797 24 1 -1.5675 -6.8552 -5.0402 25 8 7.1912 -1.2938 0.0062 26 6 8.3504 -0.5432 -0.3712 27 6 8.3172 0.7986 0.3729 28 8 7.1220 1.4907 -0.0033 29 1 -0.3633 0.0006 1.0276 30 1 -0.3633 0.8896 -0.5144 31 1 -0.3633 -0.8903 -0.5132 32 1 4.7357 2.5122 0.0003 33 1 4.8569 -2.4340 0.0001 34 1 0.8576 -2.5623 0.5133 35 1 2.5437 -3.1324 0.5150 36 1 0.1149 -4.3839 -0.8809 37 1 1.7460 -5.0894 -0.9827 38 1 0.1060 -6.5869 -1.2061 39 1 8.3403 -0.3673 -1.4469 40 1 9.2503 -1.0936 -0.0965 41 1 9.1883 1.3931 0.0976 42 1 8.3172 0.6231 1.4487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042755538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:11 Heat of formation + Delta-G solvation = -3.366292 kcal Electronic energy + Delta-G solvation = -27450.464886 eV Core-core repulsion = 23588.944187 eV Total energy + Delta-G solvation = -3861.520699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.37088 -41.92244 -38.76195 -38.31647 -37.33249 -36.12592 -35.26880 -33.20726 -32.32569 -31.07290 -30.68641 -28.43191 -27.70402 -25.82468 -25.21980 -24.05219 -23.50071 -22.13911 -21.24095 -19.67543 -19.30564 -18.89402 -18.41718 -18.12992 -17.24543 -17.06485 -16.74283 -15.97141 -15.77535 -15.59632 -15.55912 -15.36650 -15.28537 -15.06178 -14.94756 -14.37487 -14.16389 -14.12137 -13.83857 -13.56278 -13.47975 -13.37366 -13.29383 -13.05366 -12.93576 -12.66911 -12.30724 -12.11557 -12.01227 -11.93383 -11.70109 -11.31582 -11.29605 -11.03518 -10.70697 -10.53073 -9.05762 -8.88910 -8.63297 -6.35357 -0.26521 0.24074 1.37262 1.53738 1.59204 1.60880 1.75728 1.79356 1.84930 1.96137 2.18774 2.54254 2.60436 2.96039 3.12911 3.19962 3.31536 3.47688 3.59252 3.74384 3.79514 3.91952 3.98965 4.01562 4.15715 4.22530 4.41690 4.45925 4.48733 4.51193 4.54967 4.59745 4.68853 4.80527 4.92611 5.09221 5.14273 5.17744 5.21725 5.31441 5.47474 5.78840 5.91625 6.11667 6.20257 6.27893 6.60401 6.63776 6.80644 7.39963 8.79474 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.003437 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.543599 B = 8143.891415 C = 9429.075464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.299 3.701 3 N -0.522 5.522 4 C 0.041 3.959 5 C -0.082 4.082 6 C 0.051 3.949 7 C 0.064 3.936 8 C -0.115 4.115 9 C 0.043 3.957 10 N -0.487 5.487 11 C 0.120 3.880 12 C 0.009 3.991 13 H 0.122 0.878 14 C 0.235 3.765 15 N -0.486 5.486 16 C 0.026 3.974 17 C -0.615 4.615 18 H 0.040 0.960 19 C -0.023 4.023 20 N -0.933 5.933 21 Si 1.105 2.895 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.271 1.271 25 O -0.324 6.324 26 C 0.011 3.989 27 C 0.019 3.981 28 O -0.316 6.316 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.151 0.849 33 H 0.117 0.883 34 H 0.158 0.842 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.003 0.997 38 H 0.266 0.734 39 H 0.073 0.927 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.343 15.571 9.367 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.034 3.966 3 N -0.243 5.243 4 C -0.077 4.077 5 C -0.102 4.102 6 C 0.004 3.996 7 C 0.017 3.983 8 C -0.137 4.137 9 C -0.066 4.066 10 N -0.178 5.178 11 C -0.002 4.002 12 C -0.013 4.013 13 H 0.140 0.860 14 C -0.082 4.082 15 N -0.162 5.162 16 C -0.013 4.013 17 C -0.653 4.653 18 H 0.058 0.942 19 C -0.223 4.223 20 N -0.570 5.570 21 Si 0.929 3.071 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.196 1.196 25 O -0.239 6.239 26 C -0.063 4.063 27 C -0.056 4.056 28 O -0.231 6.231 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.169 0.831 33 H 0.135 0.865 34 H 0.176 0.824 35 H 0.116 0.884 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.175 0.825 41 H 0.178 0.822 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.058 15.016 7.688 19.148 hybrid contribution 1.084 -0.045 0.814 1.356 sum 10.143 14.971 8.502 19.982 Atomic orbital electron populations 1.20732 0.80615 1.06333 1.06316 1.24580 0.97422 0.79517 0.95053 1.70406 1.00124 1.28401 1.25412 1.18784 0.92459 0.89970 1.06503 1.19329 0.86443 1.00502 1.03934 1.18358 0.87574 0.88252 1.05454 1.18393 0.86430 0.89538 1.03912 1.18865 0.87722 0.99118 1.07970 1.18427 0.85869 0.94797 1.07490 1.45514 1.03517 1.08154 1.60592 1.22181 1.05050 0.77772 0.95221 1.19520 0.85574 1.01873 0.94326 0.86009 1.29541 0.94696 0.91140 0.92859 1.81033 1.14075 1.10817 1.10315 1.19142 0.96201 0.88792 0.97133 1.22320 1.45513 1.04112 0.93357 0.94195 1.26854 0.93596 0.93673 1.08160 1.70850 1.46628 1.38997 1.00568 0.83046 0.77463 0.75586 0.71029 1.20702 1.21392 1.19649 1.86301 1.13928 1.39172 1.84479 1.24034 0.87755 0.94225 1.00288 1.23986 0.86847 0.94275 1.00477 1.86292 1.14181 1.37699 1.84923 0.86627 0.87698 0.87969 0.83084 0.86474 0.82442 0.88443 0.93057 0.97821 0.92432 0.90889 0.82547 0.82213 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 9.96 71.24 0.71 -0.52 16 2 C 0.30 7.67 7.86 137.91 1.08 8.75 16 3 N -0.52 -16.29 11.27 -179.91 -2.03 -18.32 16 4 C 0.04 1.35 7.22 39.42 0.28 1.63 16 5 C -0.08 -2.51 10.00 22.60 0.23 -2.28 16 6 C 0.05 1.51 6.49 22.54 0.15 1.66 16 7 C 0.06 2.04 6.49 22.61 0.15 2.19 16 8 C -0.11 -3.92 9.18 22.42 0.21 -3.72 16 9 C 0.04 1.42 6.24 38.80 0.24 1.66 16 10 N -0.49 -13.55 2.66 -505.52 -1.35 -14.90 16 11 C 0.12 2.96 5.13 86.38 0.44 3.40 16 12 C 0.01 0.31 2.42 -12.60 -0.03 0.28 16 13 H 0.12 3.73 8.14 -2.39 -0.02 3.72 16 14 C 0.23 9.54 12.42 89.44 1.11 10.65 16 15 N -0.49 -21.90 18.40 20.00 0.37 -21.53 16 16 C 0.03 1.06 3.74 29.85 0.11 1.18 16 17 C -0.61 -31.09 8.60 25.60 0.22 -30.87 16 18 H 0.04 2.08 7.59 -2.91 -0.02 2.06 16 19 C -0.02 -1.22 5.46 84.66 0.46 -0.76 16 20 N -0.93 -52.17 13.65 21.45 0.29 -51.88 16 21 Si 1.10 48.51 29.90 68.60 2.05 50.56 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 23 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 25 O -0.32 -9.32 10.41 -83.78 -0.87 -10.19 16 26 C 0.01 0.21 7.26 72.14 0.52 0.73 16 27 C 0.02 0.29 7.25 72.14 0.52 0.81 16 28 O -0.32 -7.79 10.41 -84.36 -0.88 -8.66 16 29 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.10 1.29 7.65 -2.39 -0.02 1.27 16 32 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.12 4.19 7.99 -2.91 -0.02 4.16 16 34 H 0.16 2.56 7.62 -2.39 -0.02 2.55 16 35 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.05 1.95 8.00 -2.39 -0.02 1.93 16 37 H 0.00 0.16 8.01 -2.39 -0.02 0.14 16 38 H 0.27 14.43 7.22 -92.71 -0.67 13.76 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -75.06 361.01 5.15 -69.91 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.15 Total: 10.22 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 6.41 Total: -5.20 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -2.71 Total: -106.63 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -1.75 Total: -18.85 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.05 Total: 50.56 kcal Total: -75.06 5.15 -69.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042755538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.541 kcal (2) G-P(sol) polarization free energy of solvation -75.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds