Wall clock time and date at job start Tue Mar 31 2020 15:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47473 * 180.02562 * 4 3 2 6 6 C 1.37687 * 126.49836 * 89.99767 * 5 4 3 7 7 C 1.50696 * 126.52398 * 359.97438 * 6 5 4 8 8 C 1.34392 * 106.95647 * 180.02562 * 6 5 4 9 9 C 1.50694 * 125.82681 * 179.97438 * 8 6 5 10 10 N 1.34367 * 108.34320 * 0.02562 * 8 6 5 11 11 C 1.31268 * 109.30524 * 359.72230 * 10 8 6 12 12 S 1.76202 * 125.80181 * 180.29138 * 11 10 8 13 13 C 1.80997 * 100.00127 * 0.17926 * 12 11 10 14 14 C 1.50702 * 109.47302 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99819 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99882 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99547 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47113 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99342 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00645 * 179.97438 * 18 17 16 21 21 N 1.31523 * 119.99502 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00528 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46763 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47306 * 120.00025 * 22 20 18 25 25 H 1.48501 * 109.46924 * 240.00245 * 22 20 18 26 26 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 27 27 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 29 29 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 30 30 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 31 31 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 32 32 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 33 33 H 1.08997 * 109.47576 * 89.99551 * 7 6 5 34 34 H 1.09002 * 109.46765 * 209.99959 * 7 6 5 35 35 H 1.08999 * 109.46829 * 329.99496 * 7 6 5 36 36 H 1.09002 * 109.47231 * 90.00429 * 9 8 6 37 37 H 1.09005 * 109.47088 * 209.99694 * 9 8 6 38 38 H 1.08994 * 109.47542 * 329.99891 * 9 8 6 39 39 H 1.09000 * 109.46730 * 299.99735 * 13 12 11 40 40 H 1.08997 * 109.47402 * 59.99561 * 13 12 11 41 41 H 0.96999 * 120.00220 * 359.97438 * 16 14 13 42 42 H 1.09000 * 109.47014 * 299.99239 * 17 16 14 43 43 H 1.09003 * 109.47552 * 60.00072 * 17 16 14 44 44 H 0.96998 * 119.99536 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 4.4649 3.2704 1.1071 7 6 4.2859 2.8678 2.5483 8 6 4.9795 4.4279 0.6581 9 6 5.4835 5.5604 1.5151 10 7 4.9667 4.4034 -0.6852 11 6 4.4645 3.2614 -1.0937 12 16 4.2540 2.7697 -2.7726 13 6 4.9088 4.2329 -3.6132 14 6 4.8269 4.0341 -5.1048 15 8 4.3712 3.0043 -5.5552 16 7 5.2611 5.0002 -5.9381 17 6 5.1810 4.8071 -7.3881 18 6 5.7262 6.0253 -8.0880 19 1 6.0951 6.8600 -7.5104 20 6 5.7542 6.0743 -9.4656 21 7 5.3045 5.0580 -10.1689 22 14 6.4308 7.5840 -10.3331 23 1 6.8695 8.5802 -9.3229 24 1 7.5876 7.1926 -11.1780 25 1 5.3724 8.1795 -11.1878 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 3.8575 0.6435 0.8891 32 1 3.8568 0.6439 -0.8908 33 1 5.1813 2.3522 2.8955 34 1 4.1200 3.7572 3.1560 35 1 3.4268 2.2026 2.6356 36 1 6.5440 5.4159 1.7212 37 1 5.3409 6.5048 0.9897 38 1 4.9302 5.5798 2.4539 39 1 4.3221 5.1070 -3.3308 40 1 5.9485 4.3839 -3.3228 41 1 5.6259 5.8236 -5.5779 42 1 5.7667 3.9325 -7.6711 43 1 4.1409 4.6572 -7.6779 44 1 5.3238 5.0926 -11.1381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047560988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:28 Heat of formation + Delta-G solvation = -34.617235 kcal Electronic energy + Delta-G solvation = -24676.055133 eV Core-core repulsion = 20948.623243 eV Total energy + Delta-G solvation = -3727.431890 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.14823 -38.82331 -38.39440 -34.94963 -34.27793 -32.93159 -32.40654 -30.46122 -30.04749 -28.52950 -26.87502 -26.63488 -25.74732 -23.70942 -22.64470 -21.13406 -20.22170 -19.66962 -17.96576 -17.09681 -16.70850 -16.48666 -16.15463 -15.86327 -15.62364 -15.20140 -15.16693 -14.95502 -14.37642 -14.17091 -13.93795 -13.39126 -13.32686 -13.19101 -13.13395 -12.89350 -12.65792 -12.58506 -12.35825 -12.29418 -12.00375 -11.98950 -11.73985 -11.63525 -10.97404 -10.91940 -10.56612 -10.33369 -10.19996 -10.11868 -9.77426 -9.41164 -9.29303 -9.13053 -8.77496 -7.98104 -7.33333 -6.18552 -4.25601 1.14191 1.63582 2.11851 2.40757 2.81650 3.18701 3.23381 3.30530 3.33747 3.50215 3.99066 4.22491 4.34640 4.41986 4.49096 4.73737 4.78241 4.84941 4.90524 4.95091 5.02592 5.14736 5.17738 5.21736 5.24506 5.25521 5.29022 5.32805 5.47855 5.55488 5.56348 5.69944 5.78467 6.10252 6.56309 6.57875 6.76400 7.23683 7.31892 7.47160 7.61866 7.75463 7.93277 8.50590 8.70861 8.96591 9.40778 10.91686 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015829 B = 0.002414 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.505186 B =11594.243494 C =13090.814998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.048 3.952 4 C 0.107 3.893 5 N -0.441 5.441 6 C -0.024 4.024 7 C -0.074 4.074 8 C 0.012 3.988 9 C -0.065 4.065 10 N -0.485 5.485 11 C 0.185 3.815 12 S 0.054 5.946 13 C -0.134 4.134 14 C 0.515 3.485 15 O -0.544 6.544 16 N -0.702 5.702 17 C 0.250 3.750 18 C -0.543 4.543 19 H 0.065 0.935 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.394 0.606 42 H 0.030 0.970 43 H 0.029 0.971 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.234 -5.385 28.004 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.305 6.305 3 C -0.030 4.030 4 C -0.016 4.016 5 N -0.129 5.129 6 C -0.140 4.140 7 C -0.132 4.132 8 C -0.119 4.119 9 C -0.123 4.123 10 N -0.207 5.207 11 C -0.184 4.184 12 S 0.283 5.717 13 C -0.286 4.286 14 C 0.297 3.703 15 O -0.423 6.423 16 N -0.350 5.350 17 C 0.129 3.871 18 C -0.582 4.582 19 H 0.083 0.917 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.227 0.773 42 H 0.048 0.952 43 H 0.047 0.953 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.708 -6.852 26.460 27.922 hybrid contribution 0.528 1.941 0.617 2.104 sum -5.180 -4.911 27.077 28.002 Atomic orbital electron populations 1.22800 0.79936 1.03198 1.00416 1.87797 1.20574 1.26592 1.95566 1.22748 0.92746 0.85695 1.01790 1.21580 0.92491 0.81327 1.06220 1.45150 1.47885 1.14845 1.05059 1.21053 1.09169 0.94109 0.89643 1.20217 1.02168 1.02373 0.88438 1.20494 1.04965 0.95902 0.90516 1.20037 1.00473 0.94883 0.96909 1.70717 1.20989 1.17660 1.11379 1.25669 1.05458 0.91589 0.95697 1.86130 1.78808 1.22003 0.84761 1.23705 1.07261 1.00931 0.96752 1.19552 0.79526 0.84798 0.86405 1.90705 1.46507 1.27486 1.77604 1.46377 1.61025 1.18205 1.09432 1.19193 0.97931 0.97603 0.72380 1.21251 1.43106 1.02054 0.91769 0.91721 1.24954 0.95068 0.96734 0.97271 1.69988 1.45251 1.30286 1.06720 0.86343 0.78668 0.82255 0.79551 1.19589 1.20765 1.20780 0.93452 0.89092 0.93956 0.91780 0.92665 0.87998 0.87523 0.90875 0.89903 0.91842 0.91378 0.91104 0.91455 0.86335 0.86300 0.77271 0.95231 0.95257 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.65 10.70 -35.23 -0.38 -4.03 16 3 C 0.05 0.43 6.26 37.16 0.23 0.67 16 4 C 0.11 1.00 6.05 -4.04 -0.02 0.97 16 5 N -0.44 -5.13 2.80 -112.37 -0.31 -5.45 16 6 C -0.02 -0.26 6.97 -81.32 -0.57 -0.83 16 7 C -0.07 -0.48 9.78 36.00 0.35 -0.13 16 8 C 0.01 0.14 7.07 -82.84 -0.59 -0.44 16 9 C -0.07 -0.57 10.21 36.00 0.37 -0.21 16 10 N -0.48 -7.16 10.60 -9.67 -0.10 -7.26 16 11 C 0.19 2.62 7.96 -88.75 -0.71 1.91 16 12 S 0.05 0.82 20.76 -107.50 -2.23 -1.42 16 13 C -0.13 -2.09 5.68 36.01 0.20 -1.88 16 14 C 0.51 10.32 7.85 -10.99 -0.09 10.23 16 15 O -0.54 -12.94 15.86 5.56 0.09 -12.85 16 16 N -0.70 -14.74 5.55 -61.47 -0.34 -15.08 16 17 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 18 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 19 H 0.06 1.64 7.60 -52.48 -0.40 1.24 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 22 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.75 7.84 -51.93 -0.41 0.35 16 32 H 0.11 1.06 7.73 -51.93 -0.40 0.65 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.42 7.14 -51.93 -0.37 0.05 16 35 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.43 7.13 -51.93 -0.37 0.06 16 39 H 0.12 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.12 1.70 8.14 -51.92 -0.42 1.28 16 41 H 0.39 7.09 8.32 -40.82 -0.34 6.75 16 42 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -34.05 389.11 -8.75 -42.81 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.91 Total: 2.01 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.15 Total: 4.83 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.02 Total: -53.04 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.29 Total: -16.88 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.23 Total: -1.42 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.05 -8.75 -42.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047560988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.190 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds