Wall clock time and date at job start Tue Mar 31 2020 15:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47473 * 180.02562 * 4 3 2 6 6 C 1.37687 * 126.49836 * 89.99767 * 5 4 3 7 7 C 1.50696 * 126.52398 * 359.97438 * 6 5 4 8 8 C 1.34392 * 106.95647 * 180.02562 * 6 5 4 9 9 C 1.50694 * 125.82681 * 179.97438 * 8 6 5 10 10 N 1.34367 * 108.34320 * 0.02562 * 8 6 5 11 11 C 1.31268 * 109.30524 * 359.72230 * 10 8 6 12 12 S 1.76202 * 125.80181 * 180.29138 * 11 10 8 13 13 C 1.80997 * 100.00127 * 0.17926 * 12 11 10 14 14 C 1.50702 * 109.47302 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99819 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99882 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99547 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47113 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99342 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00645 * 179.97438 * 18 17 16 21 21 N 1.31523 * 119.99502 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00528 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46763 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47306 * 120.00025 * 22 20 18 25 25 H 1.48501 * 109.46924 * 240.00245 * 22 20 18 26 26 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 27 27 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 29 29 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 30 30 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 31 31 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 32 32 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 33 33 H 1.08997 * 109.47576 * 89.99551 * 7 6 5 34 34 H 1.09002 * 109.46765 * 209.99959 * 7 6 5 35 35 H 1.08999 * 109.46829 * 329.99496 * 7 6 5 36 36 H 1.09002 * 109.47231 * 90.00429 * 9 8 6 37 37 H 1.09005 * 109.47088 * 209.99694 * 9 8 6 38 38 H 1.08994 * 109.47542 * 329.99891 * 9 8 6 39 39 H 1.09000 * 109.46730 * 299.99735 * 13 12 11 40 40 H 1.08997 * 109.47402 * 59.99561 * 13 12 11 41 41 H 0.96999 * 120.00220 * 359.97438 * 16 14 13 42 42 H 1.09000 * 109.47014 * 299.99239 * 17 16 14 43 43 H 1.09003 * 109.47552 * 60.00072 * 17 16 14 44 44 H 0.96998 * 119.99536 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 4.4649 3.2704 1.1071 7 6 4.2859 2.8678 2.5483 8 6 4.9795 4.4279 0.6581 9 6 5.4835 5.5604 1.5151 10 7 4.9667 4.4034 -0.6852 11 6 4.4645 3.2614 -1.0937 12 16 4.2540 2.7697 -2.7726 13 6 4.9088 4.2329 -3.6132 14 6 4.8269 4.0341 -5.1048 15 8 4.3712 3.0043 -5.5552 16 7 5.2611 5.0002 -5.9381 17 6 5.1810 4.8071 -7.3881 18 6 5.7262 6.0253 -8.0880 19 1 6.0951 6.8600 -7.5104 20 6 5.7542 6.0743 -9.4656 21 7 5.3045 5.0580 -10.1689 22 14 6.4308 7.5840 -10.3331 23 1 6.8695 8.5802 -9.3229 24 1 7.5876 7.1926 -11.1780 25 1 5.3724 8.1795 -11.1878 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 3.8575 0.6435 0.8891 32 1 3.8568 0.6439 -0.8908 33 1 5.1813 2.3522 2.8955 34 1 4.1200 3.7572 3.1560 35 1 3.4268 2.2026 2.6356 36 1 6.5440 5.4159 1.7212 37 1 5.3409 6.5048 0.9897 38 1 4.9302 5.5798 2.4539 39 1 4.3221 5.1070 -3.3308 40 1 5.9485 4.3839 -3.3228 41 1 5.6259 5.8236 -5.5779 42 1 5.7667 3.9325 -7.6711 43 1 4.1409 4.6572 -7.6779 44 1 5.3238 5.0926 -11.1381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047560988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:27 Heat of formation + Delta-G solvation = -57.791586 kcal Electronic energy + Delta-G solvation = -24677.060048 eV Core-core repulsion = 20948.623243 eV Total energy + Delta-G solvation = -3728.436805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.03829 -40.58048 -39.07386 -36.23987 -35.77098 -34.43637 -33.67198 -31.58815 -31.16633 -29.26511 -28.75690 -27.28036 -26.55368 -24.69251 -24.47043 -22.05692 -21.70236 -20.79107 -19.22639 -18.50871 -17.71797 -17.60388 -17.19707 -17.13026 -16.92452 -16.69699 -16.42897 -15.99881 -15.72906 -15.17824 -14.90852 -14.64016 -14.59672 -14.06878 -13.98916 -13.93073 -13.85168 -13.73746 -13.51600 -13.22799 -13.04501 -12.89749 -12.87213 -12.75653 -12.66564 -12.35046 -12.23868 -11.73025 -11.47498 -11.13721 -11.01689 -10.83912 -10.82624 -10.67464 -10.11518 -9.91641 -8.38832 -8.30444 -6.46782 0.00771 0.74994 0.95083 1.43511 1.44192 1.52965 1.57799 1.58798 1.89042 2.28034 2.48200 2.83094 3.04843 3.50122 3.64453 3.75093 3.80044 3.98533 4.04861 4.08460 4.20625 4.25094 4.28774 4.40737 4.47282 4.54339 4.61109 4.72675 4.80859 4.92206 4.96564 5.06721 5.09514 5.10688 5.21349 5.31747 5.41262 5.60889 5.72026 5.81582 5.89937 6.00659 6.62005 6.72329 6.83125 7.18322 7.32864 8.81950 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015829 B = 0.002414 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.505186 B =11594.243494 C =13090.814998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.055 3.945 4 C 0.104 3.896 5 N -0.438 5.438 6 C -0.010 4.010 7 C -0.074 4.074 8 C -0.019 4.019 9 C -0.061 4.061 10 N -0.508 5.508 11 C 0.161 3.839 12 S 0.032 5.968 13 C -0.116 4.116 14 C 0.516 3.484 15 O -0.584 6.584 16 N -0.697 5.697 17 C 0.266 3.734 18 C -0.556 4.556 19 H 0.084 0.916 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.985 3.015 23 H -0.254 1.254 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.043 0.957 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.127 0.873 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.412 0.588 42 H -0.007 1.007 43 H -0.007 1.007 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.812 -4.053 30.916 31.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C -0.023 4.023 4 C -0.018 4.018 5 N -0.126 5.126 6 C -0.126 4.126 7 C -0.131 4.131 8 C -0.149 4.149 9 C -0.119 4.119 10 N -0.231 5.231 11 C -0.208 4.208 12 S 0.261 5.739 13 C -0.267 4.267 14 C 0.301 3.699 15 O -0.465 6.465 16 N -0.346 5.346 17 C 0.143 3.857 18 C -0.594 4.594 19 H 0.102 0.898 20 C -0.195 4.195 21 N -0.568 5.568 22 Si 0.808 3.192 23 H -0.177 1.177 24 H -0.204 1.204 25 H -0.204 1.204 26 H 0.061 0.939 27 H 0.123 0.877 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.145 0.855 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.248 0.752 42 H 0.011 0.989 43 H 0.011 0.989 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.285 -5.508 29.417 30.392 hybrid contribution 0.341 1.432 -0.149 1.480 sum -4.944 -4.075 29.268 29.961 Atomic orbital electron populations 1.22989 0.78643 1.04375 1.00966 1.87771 1.22044 1.26699 1.95645 1.22638 0.92437 0.85646 1.01537 1.21719 0.92733 0.80426 1.06892 1.45320 1.47232 1.15296 1.04740 1.21783 1.06645 0.93169 0.91024 1.20416 1.03391 1.03731 0.85577 1.21133 1.06126 0.97713 0.89953 1.20112 1.01199 0.93228 0.97334 1.70636 1.21246 1.18076 1.13166 1.25257 1.07717 0.92496 0.95322 1.86145 1.79368 1.21908 0.86495 1.23448 1.08633 1.01862 0.92783 1.20211 0.77860 0.83584 0.88244 1.90686 1.47902 1.29090 1.78862 1.46081 1.61553 1.19433 1.07569 1.18646 0.95000 0.96525 0.75486 1.21632 1.42905 1.02435 0.92380 0.89774 1.26048 0.95113 1.00144 0.98229 1.70141 1.46614 1.32867 1.07226 0.85110 0.77768 0.78038 0.78304 1.17720 1.20423 1.20419 0.93878 0.87694 0.92425 0.93649 0.91256 0.85526 0.88650 0.89416 0.87944 0.90589 0.90726 0.92016 0.88770 0.84690 0.84701 0.75226 0.98896 0.98892 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.40 -7.18 10.70 -148.98 -1.59 -8.77 16 3 C 0.06 0.94 6.26 71.98 0.45 1.39 16 4 C 0.10 1.83 6.05 86.38 0.52 2.35 16 5 N -0.44 -9.63 2.80 -509.42 -1.43 -11.06 16 6 C -0.01 -0.19 6.97 40.76 0.28 0.09 16 7 C -0.07 -0.66 9.78 71.23 0.70 0.04 16 8 C -0.02 -0.43 7.07 41.29 0.29 -0.14 16 9 C -0.06 -0.94 10.21 71.23 0.73 -0.21 16 10 N -0.51 -14.58 10.60 -184.52 -1.96 -16.53 16 11 C 0.16 4.50 7.96 179.70 1.43 5.93 16 12 S 0.03 0.99 20.76 -56.49 -1.17 -0.19 16 13 C -0.12 -3.60 5.68 71.24 0.40 -3.19 16 14 C 0.52 21.24 7.85 87.66 0.69 21.93 16 15 O -0.58 -29.07 15.86 -3.03 -0.05 -29.12 16 16 N -0.70 -29.84 5.55 -466.78 -2.59 -32.43 16 17 C 0.27 14.61 5.43 85.64 0.46 15.08 16 18 C -0.56 -30.25 9.28 25.60 0.24 -30.02 16 19 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 20 C 0.00 0.24 5.46 84.65 0.46 0.70 16 21 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 22 Si 0.98 42.48 29.54 68.60 2.03 44.51 16 23 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 26 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.13 1.56 7.84 -2.39 -0.02 1.55 16 32 H 0.10 1.89 7.73 -2.39 -0.02 1.87 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.10 0.57 7.14 -2.39 -0.02 0.55 16 35 H 0.08 0.54 7.90 -2.39 -0.02 0.52 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.09 0.89 7.13 -2.39 -0.02 0.87 16 39 H 0.14 3.77 8.14 -2.40 -0.02 3.75 16 40 H 0.13 3.78 8.14 -2.40 -0.02 3.76 16 41 H 0.41 14.62 8.32 -92.71 -0.77 13.85 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -76.37 389.11 1.66 -74.71 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.23 Total: 19.15 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 7.91 Total: 15.53 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -5.69 Total: -115.81 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -1.64 Total: -37.89 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -1.17 Total: -0.19 kcal Total: -76.37 1.66 -74.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047560988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.915 kcal (2) G-P(sol) polarization free energy of solvation -76.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds