Wall clock time and date at job start Tue Mar 31 2020 15:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38773 * 119.90636 * 2 1 4 4 N 1.31768 * 120.12775 * 179.97438 * 3 2 1 5 5 C 1.33048 * 119.92596 * 0.02562 * 4 3 2 6 6 C 1.48106 * 120.09678 * 179.97438 * 5 4 3 7 7 O 1.21530 * 119.99756 * 180.02562 * 6 5 4 8 8 N 1.34770 * 120.00168 * 0.02562 * 6 5 4 9 9 C 1.39826 * 119.99901 * 185.27502 * 8 6 5 10 10 C 1.38958 * 120.04446 * 213.36979 * 9 8 6 11 11 C 1.38114 * 120.03771 * 179.97438 * 10 9 8 12 12 C 1.38212 * 120.12787 * 359.74225 * 11 10 9 13 13 C 1.38770 * 120.09036 * 0.51554 * 12 11 10 14 14 O 1.35896 * 120.02269 * 179.76532 * 13 12 11 15 15 C 1.42897 * 116.99992 * 359.72355 * 14 13 12 16 16 C 1.53007 * 109.47270 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47078 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99979 * 359.97438 * 17 16 15 19 19 C 1.37867 * 119.99946 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00069 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00128 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46928 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47114 * 120.00555 * 21 19 17 24 24 H 1.48507 * 109.47178 * 240.00357 * 21 19 17 25 25 C 1.38627 * 119.95902 * 359.48492 * 13 12 11 26 26 C 1.39424 * 119.80250 * 0.25189 * 5 4 3 27 27 N 1.32106 * 119.87578 * 359.47665 * 26 5 4 28 28 H 1.09005 * 109.46917 * 90.00043 * 1 2 3 29 29 H 1.08997 * 109.47463 * 209.99606 * 1 2 3 30 30 H 1.08998 * 109.47579 * 330.00487 * 1 2 3 31 31 H 1.08001 * 119.93544 * 359.97438 * 3 2 1 32 32 H 0.96995 * 120.00013 * 5.27426 * 8 6 5 33 33 H 1.08004 * 119.98440 * 359.97438 * 10 9 8 34 34 H 1.08005 * 119.93679 * 179.97438 * 11 10 9 35 35 H 1.07997 * 119.95937 * 180.27267 * 12 11 10 36 36 H 1.09007 * 109.46887 * 299.99662 * 15 14 13 37 37 H 1.08996 * 109.47415 * 59.99606 * 15 14 13 38 38 H 1.08997 * 109.47056 * 299.99764 * 16 15 14 39 39 H 1.09001 * 109.46927 * 59.99996 * 16 15 14 40 40 H 0.97003 * 120.00476 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.06126 * 180.23755 * 25 13 12 42 42 H 1.07996 * 120.05914 * 179.72013 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2029 0.0000 4 7 3.5165 1.2080 0.0005 5 6 4.1847 0.0575 0.0005 6 6 5.6658 0.0588 0.0005 7 8 6.2743 -0.9931 0.0000 8 7 6.3386 1.2265 0.0010 9 6 7.7325 1.2303 -0.1103 10 6 8.4797 2.2050 0.5397 11 6 9.8565 2.2083 0.4301 12 6 10.4949 1.2399 -0.3214 13 6 9.7536 0.2672 -0.9772 14 8 10.3824 -0.6816 -1.7197 15 6 11.8082 -0.6137 -1.7862 16 6 12.3329 -1.7551 -2.6597 17 6 13.8366 -1.6831 -2.7303 18 1 14.3650 -0.9013 -2.2051 19 6 14.5375 -2.6153 -3.4654 20 7 13.8940 -3.5670 -4.1055 21 14 16.4014 -2.5266 -3.5524 22 1 16.8799 -1.3720 -2.7506 23 1 16.9825 -3.7807 -3.0094 24 1 16.8235 -2.3570 -4.9661 25 6 8.3715 0.2603 -0.8697 26 6 3.4866 -1.1493 -0.0053 27 7 2.1655 -1.1453 -0.0004 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5137 31 1 1.6563 2.1368 -0.0004 32 1 5.8560 2.0643 0.0786 33 1 7.9836 2.9605 1.1311 34 1 10.4356 2.9669 0.9357 35 1 11.5718 1.2424 -0.4017 36 1 12.1067 0.3416 -2.2180 37 1 12.2235 -0.7044 -0.7825 38 1 12.0344 -2.7101 -2.2276 39 1 11.9177 -1.6648 -3.6635 40 1 14.3871 -4.2228 -4.6230 41 1 7.7932 -0.4982 -1.3762 42 1 4.0248 -2.0856 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055568467.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:00 Heat of formation + Delta-G solvation = -2.920940 kcal Electronic energy + Delta-G solvation = -25484.965920 eV Core-core repulsion = 21623.464533 eV Total energy + Delta-G solvation = -3861.501387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.86336 -40.48268 -39.20755 -37.20794 -35.34486 -34.52351 -33.39974 -33.33259 -30.88683 -30.01309 -29.18754 -28.53136 -25.22133 -25.06058 -24.45472 -22.97678 -22.14224 -21.32538 -20.27949 -18.85367 -18.49957 -17.67038 -16.47861 -16.36001 -16.17584 -15.95595 -15.76590 -15.46121 -15.32461 -15.17507 -14.77544 -14.48080 -14.24846 -13.53466 -13.33530 -13.24924 -13.02602 -13.00972 -12.73040 -12.31224 -12.23470 -11.81809 -11.73968 -11.69524 -11.44844 -10.94370 -10.89090 -10.62424 -10.48375 -10.23571 -9.81829 -9.78555 -9.66337 -9.62056 -9.25841 -8.43662 -8.27870 -7.82748 -6.07851 -4.12506 -0.18355 0.48666 1.34590 1.63116 2.34590 2.56232 3.23526 3.28272 3.34859 3.37070 3.39280 3.50165 3.79636 3.87987 3.97017 4.22127 4.42416 4.44683 4.55758 4.92070 4.95537 4.98982 5.03654 5.18745 5.28524 5.34704 5.35922 5.44816 5.65417 5.73001 5.82552 6.04686 6.06746 6.23085 6.33109 6.51153 6.55135 6.59638 6.75164 6.93430 7.02387 7.20496 7.53907 7.67631 7.75224 7.83610 8.08850 8.26412 8.93391 9.51709 11.03758 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.001982 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.492147 B =14122.254101 C =15218.569326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.104 3.896 3 C 0.051 3.949 4 N -0.409 5.409 5 C 0.019 3.981 6 C 0.574 3.426 7 O -0.495 6.495 8 N -0.651 5.651 9 C 0.175 3.825 10 C -0.192 4.192 11 C -0.061 4.061 12 C -0.223 4.223 13 C 0.165 3.835 14 O -0.312 6.312 15 C 0.065 3.935 16 C 0.024 3.976 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.163 4.163 26 C 0.123 3.877 27 N -0.441 5.441 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.178 0.822 32 H 0.419 0.581 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.029 0.971 39 H 0.028 0.972 40 H 0.263 0.737 41 H 0.140 0.860 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.777 13.957 10.735 32.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.038 4.038 3 C -0.113 4.113 4 N -0.126 5.126 5 C -0.121 4.121 6 C 0.358 3.642 7 O -0.368 6.368 8 N -0.295 5.295 9 C 0.081 3.919 10 C -0.212 4.212 11 C -0.079 4.079 12 C -0.243 4.243 13 C 0.117 3.883 14 O -0.224 6.224 15 C -0.009 4.009 16 C -0.013 4.013 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.184 4.184 26 C -0.037 4.037 27 N -0.156 5.156 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.195 0.805 32 H 0.257 0.743 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.158 0.842 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -26.370 12.823 10.489 31.142 hybrid contribution 0.949 0.584 0.009 1.114 sum -25.421 13.407 10.498 30.598 Atomic orbital electron populations 1.20794 0.87031 1.04502 1.04060 1.22750 0.99037 0.89699 0.92289 1.23690 0.90008 0.99595 0.97958 1.68294 1.09406 1.28557 1.06334 1.22020 0.95248 0.91300 1.03536 1.17698 0.85191 0.84202 0.77074 1.90914 1.67927 1.30897 1.47041 1.43176 1.05375 1.09670 1.71328 1.17264 0.81513 0.96797 0.96333 1.20623 0.94073 1.01933 1.04609 1.20668 0.93426 0.97203 0.96631 1.21409 1.00924 0.98105 1.03820 1.18929 0.91562 0.88040 0.89770 1.86193 1.24180 1.47533 1.64533 1.23361 0.74578 1.02087 1.00905 1.19141 0.95352 0.92078 0.94744 1.21009 0.90748 1.13276 1.31340 0.92281 1.24996 0.98878 0.95150 0.95228 1.69990 1.35656 1.15446 1.31619 0.86430 0.85035 0.78045 0.77859 1.19639 1.20853 1.20863 1.20257 0.92235 1.02390 1.03491 1.23910 0.89898 0.99408 0.90464 1.68541 1.08193 1.28942 1.09903 0.89276 0.89647 0.89690 0.80455 0.74295 0.85950 0.85556 0.84932 0.93015 0.92999 0.95303 0.95371 0.92770 0.84235 0.79607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.31 10.19 36.00 0.37 0.06 16 2 C 0.10 0.68 6.79 -82.27 -0.56 0.12 16 3 C 0.05 0.31 10.88 -17.38 -0.19 0.12 16 4 N -0.41 -3.52 9.72 -9.62 -0.09 -3.61 16 5 C 0.02 0.20 6.75 -82.85 -0.56 -0.36 16 6 C 0.57 7.30 7.55 -12.21 -0.09 7.21 16 7 O -0.50 -7.96 14.03 5.34 0.07 -7.88 16 8 N -0.65 -7.51 5.32 -10.66 -0.06 -7.56 16 9 C 0.17 2.44 6.28 -83.75 -0.53 1.91 16 10 C -0.19 -2.33 9.96 -39.36 -0.39 -2.72 16 11 C -0.06 -0.77 10.03 -39.64 -0.40 -1.17 16 12 C -0.22 -3.53 9.04 -39.39 -0.36 -3.88 16 13 C 0.17 3.05 6.68 -39.24 -0.26 2.79 16 14 O -0.31 -6.76 10.13 -19.41 -0.20 -6.95 16 15 C 0.06 1.42 4.68 37.16 0.17 1.60 16 16 C 0.02 0.64 5.34 -27.88 -0.15 0.49 16 17 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 21 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 C -0.16 -2.80 8.59 -39.24 -0.34 -3.14 16 26 C 0.12 1.22 10.77 -16.99 -0.18 1.04 16 27 N -0.44 -4.06 10.41 -8.94 -0.09 -4.15 16 28 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.05 8.08 -51.93 -0.42 -0.37 16 31 H 0.18 0.40 8.06 -52.49 -0.42 -0.03 16 32 H 0.42 3.68 8.18 -40.82 -0.33 3.35 16 33 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 35 H 0.13 2.03 6.29 -52.49 -0.33 1.70 16 36 H 0.05 1.07 7.67 -51.92 -0.40 0.67 16 37 H 0.05 1.08 7.65 -51.93 -0.40 0.69 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.14 2.56 6.41 -52.49 -0.34 2.23 16 42 H 0.19 1.74 7.65 -52.49 -0.40 1.34 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -34.37 366.60 -8.12 -42.49 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.12 Total: 1.26 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -3.87 Total: -9.48 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.49 Total: -41.42 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.12 Total: -14.83 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.37 -8.12 -42.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055568467.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.565 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds