Wall clock time and date at job start Tue Mar 31 2020 15:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38773 * 119.90636 * 2 1 4 4 N 1.31768 * 120.12775 * 179.97438 * 3 2 1 5 5 C 1.33048 * 119.92596 * 0.02562 * 4 3 2 6 6 C 1.48106 * 120.09678 * 179.97438 * 5 4 3 7 7 O 1.21530 * 119.99756 * 180.02562 * 6 5 4 8 8 N 1.34770 * 120.00168 * 0.02562 * 6 5 4 9 9 C 1.39826 * 119.99901 * 185.27502 * 8 6 5 10 10 C 1.38958 * 120.04446 * 213.36979 * 9 8 6 11 11 C 1.38114 * 120.03771 * 179.97438 * 10 9 8 12 12 C 1.38212 * 120.12787 * 359.74225 * 11 10 9 13 13 C 1.38770 * 120.09036 * 0.51554 * 12 11 10 14 14 O 1.35896 * 120.02269 * 179.76532 * 13 12 11 15 15 C 1.42897 * 116.99992 * 359.72355 * 14 13 12 16 16 C 1.53007 * 109.47270 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47078 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99979 * 359.97438 * 17 16 15 19 19 C 1.37867 * 119.99946 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00069 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00128 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46928 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47114 * 120.00555 * 21 19 17 24 24 H 1.48507 * 109.47178 * 240.00357 * 21 19 17 25 25 C 1.38627 * 119.95902 * 359.48492 * 13 12 11 26 26 C 1.39424 * 119.80250 * 0.25189 * 5 4 3 27 27 N 1.32106 * 119.87578 * 359.47665 * 26 5 4 28 28 H 1.09005 * 109.46917 * 90.00043 * 1 2 3 29 29 H 1.08997 * 109.47463 * 209.99606 * 1 2 3 30 30 H 1.08998 * 109.47579 * 330.00487 * 1 2 3 31 31 H 1.08001 * 119.93544 * 359.97438 * 3 2 1 32 32 H 0.96995 * 120.00013 * 5.27426 * 8 6 5 33 33 H 1.08004 * 119.98440 * 359.97438 * 10 9 8 34 34 H 1.08005 * 119.93679 * 179.97438 * 11 10 9 35 35 H 1.07997 * 119.95937 * 180.27267 * 12 11 10 36 36 H 1.09007 * 109.46887 * 299.99662 * 15 14 13 37 37 H 1.08996 * 109.47415 * 59.99606 * 15 14 13 38 38 H 1.08997 * 109.47056 * 299.99764 * 16 15 14 39 39 H 1.09001 * 109.46927 * 59.99996 * 16 15 14 40 40 H 0.97003 * 120.00476 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.06126 * 180.23755 * 25 13 12 42 42 H 1.07996 * 120.05914 * 179.72013 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2029 0.0000 4 7 3.5165 1.2080 0.0005 5 6 4.1847 0.0575 0.0005 6 6 5.6658 0.0588 0.0005 7 8 6.2743 -0.9931 0.0000 8 7 6.3386 1.2265 0.0010 9 6 7.7325 1.2303 -0.1103 10 6 8.4797 2.2050 0.5397 11 6 9.8565 2.2083 0.4301 12 6 10.4949 1.2399 -0.3214 13 6 9.7536 0.2672 -0.9772 14 8 10.3824 -0.6816 -1.7197 15 6 11.8082 -0.6137 -1.7862 16 6 12.3329 -1.7551 -2.6597 17 6 13.8366 -1.6831 -2.7303 18 1 14.3650 -0.9013 -2.2051 19 6 14.5375 -2.6153 -3.4654 20 7 13.8940 -3.5670 -4.1055 21 14 16.4014 -2.5266 -3.5524 22 1 16.8799 -1.3720 -2.7506 23 1 16.9825 -3.7807 -3.0094 24 1 16.8235 -2.3570 -4.9661 25 6 8.3715 0.2603 -0.8697 26 6 3.4866 -1.1493 -0.0053 27 7 2.1655 -1.1453 -0.0004 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5137 31 1 1.6563 2.1368 -0.0004 32 1 5.8560 2.0643 0.0786 33 1 7.9836 2.9605 1.1311 34 1 10.4356 2.9669 0.9357 35 1 11.5718 1.2424 -0.4017 36 1 12.1067 0.3416 -2.2180 37 1 12.2235 -0.7044 -0.7825 38 1 12.0344 -2.7101 -2.2276 39 1 11.9177 -1.6648 -3.6635 40 1 14.3871 -4.2228 -4.6230 41 1 7.7932 -0.4982 -1.3762 42 1 4.0248 -2.0856 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055568467.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:59 Heat of formation + Delta-G solvation = -26.989973 kcal Electronic energy + Delta-G solvation = -25486.009632 eV Core-core repulsion = 21623.464533 eV Total energy + Delta-G solvation = -3862.545099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.57750 -41.53478 -40.49394 -38.51614 -36.15758 -35.60302 -35.30173 -33.96574 -32.61663 -31.21727 -30.50000 -29.25269 -27.02872 -25.82247 -25.28188 -24.02474 -23.59850 -22.63442 -21.60273 -19.95326 -19.40543 -18.75108 -18.23077 -17.31917 -17.07267 -17.02847 -16.90193 -16.80851 -16.64984 -16.47748 -16.03443 -15.63618 -15.17555 -14.54104 -14.49693 -14.35461 -14.29882 -13.81748 -13.70693 -13.38752 -13.27311 -13.24106 -12.86442 -12.78539 -12.67922 -12.56794 -12.35266 -12.30721 -11.86081 -11.65637 -11.51991 -11.38342 -11.23182 -10.64124 -10.39480 -10.33100 -9.48607 -9.06628 -8.27300 -6.41605 -0.87853 -0.12712 0.21863 0.45144 1.40467 1.42150 1.44611 1.55675 1.62942 2.25570 2.47835 2.53019 2.76043 2.79920 2.94929 3.07052 3.21919 3.60482 3.84918 3.88273 4.00311 4.14113 4.18002 4.22041 4.26530 4.39950 4.42045 4.52886 4.64434 4.73387 4.76453 4.83138 4.99915 5.18914 5.21321 5.30002 5.32285 5.37281 5.44468 5.47923 5.66726 5.82937 5.91223 6.05526 6.17269 6.51261 6.53698 6.73651 6.82134 7.28762 8.86321 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.001982 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.492147 B =14122.254101 C =15218.569326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.110 3.890 3 C 0.062 3.938 4 N -0.414 5.414 5 C 0.000 4.000 6 C 0.573 3.427 7 O -0.540 6.540 8 N -0.638 5.638 9 C 0.174 3.826 10 C -0.171 4.171 11 C -0.050 4.050 12 C -0.230 4.230 13 C 0.126 3.874 14 O -0.345 6.345 15 C 0.084 3.916 16 C 0.026 3.974 17 C -0.544 4.544 18 H 0.074 0.926 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.980 3.020 22 H -0.255 1.255 23 H -0.278 1.278 24 H -0.277 1.277 25 C -0.185 4.185 26 C 0.111 3.889 27 N -0.464 5.464 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.225 0.775 32 H 0.435 0.565 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.136 0.864 36 H 0.066 0.934 37 H 0.063 0.937 38 H -0.005 1.005 39 H -0.003 1.003 40 H 0.267 0.733 41 H 0.112 0.888 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.838 17.935 12.581 35.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.032 4.032 3 C -0.103 4.103 4 N -0.131 5.131 5 C -0.138 4.138 6 C 0.359 3.641 7 O -0.416 6.416 8 N -0.284 5.284 9 C 0.079 3.921 10 C -0.191 4.191 11 C -0.068 4.068 12 C -0.249 4.249 13 C 0.080 3.920 14 O -0.259 6.259 15 C 0.010 3.990 16 C -0.011 4.011 17 C -0.582 4.582 18 H 0.093 0.907 19 C -0.200 4.200 20 N -0.572 5.572 21 Si 0.803 3.197 22 H -0.178 1.178 23 H -0.203 1.203 24 H -0.202 1.202 25 C -0.206 4.206 26 C -0.048 4.048 27 N -0.180 5.180 28 H 0.121 0.879 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.242 0.758 32 H 0.276 0.724 33 H 0.185 0.815 34 H 0.187 0.813 35 H 0.154 0.846 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.013 0.987 39 H 0.015 0.985 40 H 0.075 0.925 41 H 0.130 0.870 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -27.438 16.835 12.354 34.480 hybrid contribution 0.950 -0.560 -0.517 1.218 sum -26.488 16.276 11.837 33.266 Atomic orbital electron populations 1.20983 0.84069 1.05933 1.05234 1.23512 1.00864 0.89128 0.89736 1.24489 0.89051 1.01209 0.95522 1.68289 1.10729 1.27396 1.06645 1.21560 0.93788 0.92198 1.06242 1.18102 0.86325 0.83762 0.75901 1.90892 1.69154 1.32468 1.49101 1.43088 1.04510 1.10135 1.70636 1.17418 0.82690 0.96320 0.95633 1.21127 0.93914 1.01227 1.02804 1.21156 0.93981 0.96607 0.95045 1.21569 1.01090 0.98184 1.04070 1.19210 0.92113 0.89060 0.91623 1.86098 1.23622 1.49754 1.66415 1.22917 0.75417 1.00369 1.00307 1.18996 0.95682 0.92614 0.93854 1.21433 0.91338 1.13833 1.31577 0.90749 1.26106 1.04901 0.94477 0.94507 1.70146 1.38160 1.16434 1.32498 0.85180 0.77649 0.78629 0.78232 1.17838 1.20329 1.20209 1.20221 0.91936 1.03359 1.05097 1.23795 0.90558 0.99161 0.91243 1.68585 1.07648 1.30714 1.11040 0.87919 0.90144 0.86353 0.75838 0.72434 0.81484 0.81311 0.84615 0.91558 0.91911 0.98690 0.98475 0.92469 0.86994 0.80689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.26 10.19 71.23 0.73 0.47 16 2 C 0.11 1.20 6.79 42.64 0.29 1.49 16 3 C 0.06 0.56 10.88 84.83 0.92 1.48 16 4 N -0.41 -6.42 9.72 -184.34 -1.79 -8.22 16 5 C 0.00 0.00 6.75 41.87 0.28 0.29 16 6 C 0.57 15.35 7.55 86.86 0.66 16.01 16 7 O -0.54 -19.09 14.03 -3.81 -0.05 -19.15 16 8 N -0.64 -14.43 5.32 -305.93 -1.63 -16.05 16 9 C 0.17 4.77 6.28 38.17 0.24 5.01 16 10 C -0.17 -3.56 9.96 22.41 0.22 -3.34 16 11 C -0.05 -1.10 10.03 22.23 0.22 -0.88 16 12 C -0.23 -7.09 9.04 22.39 0.20 -6.88 16 13 C 0.13 4.89 6.68 22.49 0.15 5.04 16 14 O -0.34 -16.10 10.13 -92.38 -0.94 -17.03 16 15 C 0.08 3.87 4.68 71.98 0.34 4.21 16 16 C 0.03 1.47 5.34 29.85 0.16 1.63 16 17 C -0.54 -31.50 9.11 25.60 0.23 -31.26 16 18 H 0.07 3.98 7.74 -2.91 -0.02 3.96 16 19 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 20 N -0.93 -58.40 13.29 21.44 0.28 -58.12 16 21 Si 0.98 44.33 29.54 68.60 2.03 46.36 16 22 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 25 C -0.19 -6.76 8.59 22.49 0.19 -6.57 16 26 C 0.11 2.35 10.77 84.94 0.92 3.27 16 27 N -0.46 -8.49 10.41 -182.20 -1.90 -10.39 16 28 H 0.10 0.07 8.14 -2.38 -0.02 0.05 16 29 H 0.08 0.34 8.14 -2.39 -0.02 0.33 16 30 H 0.12 -0.45 8.08 -2.39 -0.02 -0.47 16 31 H 0.23 -0.21 8.06 -2.91 -0.02 -0.24 16 32 H 0.43 6.80 8.18 -92.71 -0.76 6.04 16 33 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 34 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.14 4.02 6.29 -2.91 -0.02 4.00 16 36 H 0.07 2.80 7.67 -2.38 -0.02 2.78 16 37 H 0.06 2.70 7.65 -2.39 -0.02 2.68 16 38 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 39 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.11 4.62 6.41 -2.91 -0.02 4.61 16 42 H 0.18 3.86 7.65 -2.91 -0.02 3.84 16 Total: -1.00 -81.75 366.60 2.52 -79.22 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.31 Total: 13.06 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 6.21 Total: -9.68 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -5.03 Total: -92.78 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.99 Total: -36.18 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -81.75 2.52 -79.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055568467.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.235 kcal (2) G-P(sol) polarization free energy of solvation -81.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds