Wall clock time and date at job start Tue Mar 31 2020 15:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30830 * 125.83452 * 2 1 4 4 N 1.40067 * 108.38204 * 179.97438 * 3 2 1 5 5 H 0.96994 * 126.05616 * 179.97438 * 4 3 2 6 6 C 1.35839 * 107.88988 * 359.76496 * 4 3 2 7 7 C 1.50701 * 126.22156 * 180.25247 * 6 4 3 8 8 C 1.35783 * 107.55891 * 0.38050 * 6 4 3 9 9 N 1.40684 * 126.08384 * 179.87326 * 8 6 4 10 10 C 1.34783 * 119.99854 * 149.06416 * 9 8 6 11 11 O 1.21749 * 119.99661 * 354.88369 * 10 9 8 12 12 C 1.46236 * 119.99872 * 174.88110 * 10 9 8 13 13 C 1.35021 * 120.00125 * 180.02562 * 12 10 9 14 14 C 1.46964 * 120.00541 * 179.97438 * 13 12 10 15 15 C 1.40020 * 120.09609 * 359.72235 * 14 13 12 16 16 C 1.37603 * 119.89613 * 179.71525 * 15 14 13 17 17 C 1.39176 * 120.09756 * 0.58378 * 16 15 14 18 18 O 1.35578 * 119.89595 * 179.69344 * 17 16 15 19 19 C 1.34785 * 117.00068 * 174.42523 * 18 17 16 20 20 H 1.08001 * 119.99830 * 5.07202 * 19 18 17 21 21 C 1.38714 * 120.00157 * 185.07308 * 19 18 17 22 22 N 1.31505 * 119.99868 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99827 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47398 * 59.99874 * 23 21 19 25 25 H 1.48507 * 109.47026 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47202 * 299.99582 * 23 21 19 27 27 C 1.39172 * 120.20494 * 359.67066 * 17 16 15 28 28 C 1.37594 * 120.10038 * 0.04570 * 27 17 16 29 29 H 1.08996 * 109.47431 * 277.42059 * 1 2 3 30 30 H 1.09005 * 109.46977 * 37.42438 * 1 2 3 31 31 H 1.08997 * 109.46974 * 157.42202 * 1 2 3 32 32 H 1.08991 * 109.47408 * 270.15385 * 7 6 4 33 33 H 1.09006 * 109.46720 * 30.15467 * 7 6 4 34 34 H 1.08999 * 109.46667 * 150.14979 * 7 6 4 35 35 H 0.96998 * 120.00216 * 329.06763 * 9 8 6 36 36 H 1.08000 * 120.00287 * 359.97438 * 12 10 9 37 37 H 1.08005 * 119.99971 * 359.72231 * 13 12 10 38 38 H 1.08002 * 120.05695 * 359.97438 * 15 14 13 39 39 H 1.07994 * 119.94966 * 180.27763 * 16 15 14 40 40 H 0.97003 * 120.00264 * 180.02562 * 22 21 19 41 41 H 1.08001 * 119.95000 * 180.02562 * 27 17 16 42 42 H 1.08005 * 120.04954 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0607 0.0000 4 7 3.6091 0.6406 0.0006 5 1 4.3889 1.2174 0.0004 6 6 3.6195 -0.7178 0.0063 7 6 4.8420 -1.5989 0.0142 8 6 2.3281 -1.1373 0.0005 9 7 1.8913 -2.4746 0.0010 10 6 0.7273 -2.8032 0.5958 11 8 0.1001 -1.9614 1.2125 12 6 0.2179 -4.1706 0.5004 13 6 -0.9484 -4.4997 1.0958 14 6 -1.4607 -5.8737 0.9994 15 6 -0.7439 -6.8419 0.2858 16 6 -1.2245 -8.1287 0.2031 17 6 -2.4271 -8.4653 0.8174 18 8 -2.8999 -9.7329 0.7281 19 6 -4.0074 -10.0244 1.4389 20 1 -4.5236 -9.2442 1.9785 21 6 -4.4841 -11.3264 1.4773 22 7 -3.8559 -12.2763 0.8198 23 14 -6.0194 -11.7302 2.4618 24 1 -7.1648 -10.9441 1.9373 25 1 -6.3172 -13.1802 2.3419 26 1 -5.7963 -11.3877 3.8895 27 6 -3.1457 -7.5050 1.5233 28 6 -2.6700 -6.2173 1.6161 29 1 -0.3634 0.1327 1.0190 30 1 -0.3633 0.8162 -0.6246 31 1 -0.3633 -0.9489 -0.3946 32 1 5.1420 -1.8134 -1.0114 33 1 5.6545 -1.0883 0.5313 34 1 4.6136 -2.5323 0.5288 35 1 2.4279 -3.1602 -0.4267 36 1 0.7741 -4.9171 -0.0471 37 1 -1.5029 -3.7540 1.6463 38 1 0.1868 -6.5803 -0.1956 39 1 -0.6700 -8.8772 -0.3433 40 1 -4.1894 -13.1868 0.8463 41 1 -4.0783 -7.7709 1.9987 42 1 -3.2285 -5.4725 2.1638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058367178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:35 Heat of formation + Delta-G solvation = 54.889545 kcal Electronic energy + Delta-G solvation = -25520.523702 eV Core-core repulsion = 21661.529166 eV Total energy + Delta-G solvation = -3858.994536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66227 -39.47665 -39.09709 -36.92167 -34.76984 -33.58602 -33.15420 -32.32777 -30.89835 -30.44339 -28.41574 -27.80258 -26.95623 -25.67860 -23.61299 -22.22883 -21.28259 -20.90258 -19.65711 -19.21371 -18.20135 -17.81843 -17.12910 -16.97823 -15.94716 -15.52650 -15.12799 -14.80389 -14.70143 -14.42093 -14.11344 -13.89712 -13.84292 -13.51190 -13.42296 -13.16502 -13.04080 -12.61732 -12.46526 -12.30851 -12.19853 -11.93985 -11.77372 -11.73872 -11.14504 -11.09686 -11.07503 -10.71935 -10.56092 -10.37260 -9.70471 -9.55276 -9.50618 -9.36213 -8.87702 -8.39853 -7.95334 -7.12516 -6.66518 -4.21376 0.99957 1.55586 2.12160 2.35602 2.50172 2.70543 3.03349 3.05314 3.07310 3.28094 3.60469 3.81235 4.32667 4.49438 4.62953 4.69843 4.88954 4.91211 5.02740 5.04901 5.21051 5.25523 5.43187 5.48348 5.52669 5.59776 5.65016 5.79611 5.89508 5.92698 5.99582 6.09680 6.38168 6.40871 6.45766 6.57731 6.71341 6.77368 6.90063 7.03847 7.11201 7.21946 7.26021 7.37687 7.58480 7.62339 7.78630 8.31292 8.78092 9.44776 10.49915 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.035138 B = 0.001840 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.660717 B =15211.528765 C =15826.989299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.097 3.903 3 N -0.289 5.289 4 N -0.477 5.477 5 H 0.440 0.560 6 C 0.052 3.948 7 C -0.089 4.089 8 C 0.010 3.990 9 N -0.649 5.649 10 C 0.549 3.451 11 O -0.535 6.535 12 C -0.282 4.282 13 C 0.042 3.958 14 C -0.200 4.200 15 C -0.042 4.042 16 C -0.200 4.200 17 C 0.167 3.833 18 O -0.162 6.162 19 C -0.393 4.393 20 H 0.097 0.903 21 C 0.042 3.958 22 N -0.852 5.852 23 Si 0.945 3.055 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.267 1.267 27 C -0.243 4.243 28 C -0.034 4.034 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.407 0.593 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.275 0.725 41 H 0.131 0.869 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.623 17.594 -2.209 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 N -0.113 5.113 4 N -0.189 5.189 5 H 0.285 0.715 6 C -0.078 4.078 7 C -0.148 4.148 8 C -0.095 4.095 9 N -0.295 5.295 10 C 0.343 3.657 11 O -0.414 6.414 12 C -0.304 4.304 13 C 0.023 3.977 14 C -0.201 4.201 15 C -0.060 4.060 16 C -0.219 4.219 17 C 0.110 3.890 18 O -0.062 6.062 19 C -0.469 4.469 20 H 0.114 0.886 21 C -0.165 4.165 22 N -0.484 5.484 23 Si 0.769 3.231 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.192 1.192 27 C -0.262 4.262 28 C -0.052 4.052 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.243 0.757 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.085 0.915 41 H 0.149 0.851 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.191 18.886 -1.958 23.119 hybrid contribution 0.072 -1.167 0.257 1.198 sum 13.263 17.718 -1.701 22.198 Atomic orbital electron populations 1.20349 0.85646 1.02027 1.03280 1.22388 0.97572 0.88728 0.98456 1.77274 0.86347 1.21952 1.25717 1.45921 1.07196 1.04144 1.61593 0.71525 1.20683 0.95813 0.85477 1.05803 1.20401 0.92765 0.98292 1.03313 1.17203 0.90724 0.85778 1.15751 1.42703 1.23578 1.05837 1.57370 1.18452 0.79792 0.89041 0.78454 1.90849 1.58269 1.50788 1.41453 1.22319 1.01361 0.94785 1.11897 1.22281 0.92177 0.94042 0.89239 1.18448 0.99066 0.93086 1.09515 1.20881 0.97763 0.91753 0.95652 1.20153 0.96752 0.97027 1.07996 1.19620 0.91731 0.85636 0.91982 1.83904 1.40708 1.22815 1.58817 1.21432 1.01877 0.95095 1.28474 0.88563 1.25395 0.99518 0.94279 0.97266 1.70001 1.38684 1.01727 1.38002 0.85714 0.79714 0.78157 0.79553 1.19233 1.20083 1.19236 1.21100 1.03466 0.93584 1.08030 1.20990 0.93697 0.95388 0.95154 0.89489 0.92732 0.90242 0.90166 0.90784 0.89725 0.75737 0.85822 0.85812 0.86391 0.86142 0.91526 0.85130 0.86784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.70 8.34 36.00 0.30 -0.40 16 2 C 0.10 1.30 6.90 -82.26 -0.57 0.73 16 3 N -0.29 -3.72 12.69 33.75 0.43 -3.29 16 4 N -0.48 -4.44 7.40 33.71 0.25 -4.19 16 5 H 0.44 2.50 8.96 -182.63 -1.64 0.87 16 6 C 0.05 0.47 7.26 -81.70 -0.59 -0.12 16 7 C -0.09 -0.44 10.38 36.01 0.37 -0.07 16 8 C 0.01 0.12 6.57 -83.91 -0.55 -0.44 16 9 N -0.65 -6.87 5.39 -11.34 -0.06 -6.93 16 10 C 0.55 7.19 6.79 -13.05 -0.09 7.10 16 11 O -0.53 -8.39 11.38 5.15 0.06 -8.33 16 12 C -0.28 -3.54 9.41 -37.51 -0.35 -3.89 16 13 C 0.04 0.60 9.45 -37.19 -0.35 0.25 16 14 C -0.20 -3.25 5.87 -105.03 -0.62 -3.87 16 15 C -0.04 -0.69 9.40 -39.15 -0.37 -1.06 16 16 C -0.20 -3.89 9.97 -39.47 -0.39 -4.28 16 17 C 0.17 3.76 6.66 -38.89 -0.26 3.50 16 18 O -0.16 -4.32 9.74 0.71 0.01 -4.32 16 19 C -0.39 -10.31 9.48 30.91 0.29 -10.02 16 20 H 0.10 2.31 5.18 -52.49 -0.27 2.04 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.85 -23.59 13.67 55.48 0.76 -22.83 16 23 Si 0.94 19.30 29.55 -169.99 -5.02 14.28 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 25 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 27 C -0.24 -4.90 9.14 -39.47 -0.36 -5.26 16 28 C -0.03 -0.58 9.78 -39.15 -0.38 -0.97 16 29 H 0.09 1.20 7.34 -51.93 -0.38 0.82 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.07 5.94 -51.93 -0.31 0.76 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.41 3.02 8.81 -40.82 -0.36 2.66 16 36 H 0.12 1.30 6.07 -52.49 -0.32 0.99 16 37 H 0.12 1.72 7.52 -52.48 -0.39 1.33 16 38 H 0.12 1.54 6.16 -52.49 -0.32 1.21 16 39 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.13 2.62 5.62 -52.49 -0.29 2.32 16 42 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -32.26 360.63 -8.12 -40.38 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.96 Total: 7.60 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -4.01 Total: -17.81 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 1.37 Total: -37.24 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.65 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.26 -8.12 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058367178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.273 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds