Wall clock time and date at job start Tue Mar 31 2020 15:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30830 * 125.83452 * 2 1 4 4 N 1.40067 * 108.38204 * 179.97438 * 3 2 1 5 5 H 0.96994 * 126.05616 * 179.97438 * 4 3 2 6 6 C 1.35839 * 107.88988 * 359.76496 * 4 3 2 7 7 C 1.50701 * 126.22156 * 180.25247 * 6 4 3 8 8 C 1.35783 * 107.55891 * 0.38050 * 6 4 3 9 9 N 1.40684 * 126.08384 * 179.87326 * 8 6 4 10 10 C 1.34783 * 119.99854 * 149.06416 * 9 8 6 11 11 O 1.21749 * 119.99661 * 354.88369 * 10 9 8 12 12 C 1.46236 * 119.99872 * 174.88110 * 10 9 8 13 13 C 1.35021 * 120.00125 * 180.02562 * 12 10 9 14 14 C 1.46964 * 120.00541 * 179.97438 * 13 12 10 15 15 C 1.40020 * 120.09609 * 359.72235 * 14 13 12 16 16 C 1.37603 * 119.89613 * 179.71525 * 15 14 13 17 17 C 1.39176 * 120.09756 * 0.58378 * 16 15 14 18 18 O 1.35578 * 119.89595 * 179.69344 * 17 16 15 19 19 C 1.34785 * 117.00068 * 174.42523 * 18 17 16 20 20 H 1.08001 * 119.99830 * 5.07202 * 19 18 17 21 21 C 1.38714 * 120.00157 * 185.07308 * 19 18 17 22 22 N 1.31505 * 119.99868 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99827 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47398 * 59.99874 * 23 21 19 25 25 H 1.48507 * 109.47026 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47202 * 299.99582 * 23 21 19 27 27 C 1.39172 * 120.20494 * 359.67066 * 17 16 15 28 28 C 1.37594 * 120.10038 * 0.04570 * 27 17 16 29 29 H 1.08996 * 109.47431 * 277.42059 * 1 2 3 30 30 H 1.09005 * 109.46977 * 37.42438 * 1 2 3 31 31 H 1.08997 * 109.46974 * 157.42202 * 1 2 3 32 32 H 1.08991 * 109.47408 * 270.15385 * 7 6 4 33 33 H 1.09006 * 109.46720 * 30.15467 * 7 6 4 34 34 H 1.08999 * 109.46667 * 150.14979 * 7 6 4 35 35 H 0.96998 * 120.00216 * 329.06763 * 9 8 6 36 36 H 1.08000 * 120.00287 * 359.97438 * 12 10 9 37 37 H 1.08005 * 119.99971 * 359.72231 * 13 12 10 38 38 H 1.08002 * 120.05695 * 359.97438 * 15 14 13 39 39 H 1.07994 * 119.94966 * 180.27763 * 16 15 14 40 40 H 0.97003 * 120.00264 * 180.02562 * 22 21 19 41 41 H 1.08001 * 119.95000 * 180.02562 * 27 17 16 42 42 H 1.08005 * 120.04954 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0607 0.0000 4 7 3.6091 0.6406 0.0006 5 1 4.3889 1.2174 0.0004 6 6 3.6195 -0.7178 0.0063 7 6 4.8420 -1.5989 0.0142 8 6 2.3281 -1.1373 0.0005 9 7 1.8913 -2.4746 0.0010 10 6 0.7273 -2.8032 0.5958 11 8 0.1001 -1.9614 1.2125 12 6 0.2179 -4.1706 0.5004 13 6 -0.9484 -4.4997 1.0958 14 6 -1.4607 -5.8737 0.9994 15 6 -0.7439 -6.8419 0.2858 16 6 -1.2245 -8.1287 0.2031 17 6 -2.4271 -8.4653 0.8174 18 8 -2.8999 -9.7329 0.7281 19 6 -4.0074 -10.0244 1.4389 20 1 -4.5236 -9.2442 1.9785 21 6 -4.4841 -11.3264 1.4773 22 7 -3.8559 -12.2763 0.8198 23 14 -6.0194 -11.7302 2.4618 24 1 -7.1648 -10.9441 1.9373 25 1 -6.3172 -13.1802 2.3419 26 1 -5.7963 -11.3877 3.8895 27 6 -3.1457 -7.5050 1.5233 28 6 -2.6700 -6.2173 1.6161 29 1 -0.3634 0.1327 1.0190 30 1 -0.3633 0.8162 -0.6246 31 1 -0.3633 -0.9489 -0.3946 32 1 5.1420 -1.8134 -1.0114 33 1 5.6545 -1.0883 0.5313 34 1 4.6136 -2.5323 0.5288 35 1 2.4279 -3.1602 -0.4267 36 1 0.7741 -4.9171 -0.0471 37 1 -1.5029 -3.7540 1.6463 38 1 0.1868 -6.5803 -0.1956 39 1 -0.6700 -8.8772 -0.3433 40 1 -4.1894 -13.1868 0.8463 41 1 -4.0783 -7.7709 1.9987 42 1 -3.2285 -5.4725 2.1638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058367178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:34 Heat of formation + Delta-G solvation = 33.199880 kcal Electronic energy + Delta-G solvation = -25521.464236 eV Core-core repulsion = 21661.529166 eV Total energy + Delta-G solvation = -3859.935071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.50301 -40.84529 -40.35176 -38.46489 -35.71887 -34.76621 -34.28502 -33.91154 -31.93757 -31.69335 -29.69585 -28.75318 -27.79246 -27.37915 -24.84573 -23.70309 -22.54548 -21.75263 -20.79481 -20.31933 -19.69351 -18.83723 -18.70132 -18.00995 -16.88765 -16.52078 -16.40427 -16.29528 -15.94044 -15.69749 -15.57600 -15.34285 -14.83411 -14.68747 -14.57363 -14.09115 -14.07297 -13.73822 -13.57780 -13.32767 -13.20462 -13.13030 -13.08617 -12.97874 -12.66331 -12.51375 -12.19802 -12.12339 -11.96631 -11.31050 -11.18704 -11.06346 -10.71096 -10.49529 -10.21163 -9.85402 -8.85961 -8.57959 -8.50188 -6.16344 -0.21811 0.62295 0.75119 1.13772 1.36822 1.46926 1.52319 1.65150 1.79745 2.16822 2.38623 2.51881 2.89335 3.21359 3.45806 3.64620 3.84195 3.86271 3.99473 4.12347 4.14052 4.29936 4.39299 4.46006 4.52811 4.69631 4.73220 4.77636 4.81854 4.90354 4.98862 5.05703 5.07722 5.15714 5.23246 5.31451 5.38361 5.41353 5.61858 5.67259 5.80731 5.85923 5.99489 6.14574 6.39351 6.52205 6.74251 6.94077 7.35354 7.71727 8.71461 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.035138 B = 0.001840 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.660717 B =15211.528765 C =15826.989299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C 0.072 3.928 3 N -0.320 5.320 4 N -0.465 5.465 5 H 0.456 0.544 6 C 0.078 3.922 7 C -0.089 4.089 8 C -0.027 4.027 9 N -0.629 5.629 10 C 0.542 3.458 11 O -0.562 6.562 12 C -0.239 4.239 13 C 0.018 3.982 14 C -0.169 4.169 15 C -0.037 4.037 16 C -0.208 4.208 17 C 0.128 3.872 18 O -0.220 6.220 19 C -0.417 4.417 20 H 0.105 0.895 21 C -0.019 4.019 22 N -0.914 5.914 23 Si 1.017 2.983 24 H -0.257 1.257 25 H -0.272 1.272 26 H -0.257 1.257 27 C -0.250 4.250 28 C -0.041 4.041 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.425 0.575 36 H 0.154 0.846 37 H 0.127 0.873 38 H 0.163 0.837 39 H 0.122 0.878 40 H 0.275 0.725 41 H 0.123 0.877 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.436 20.465 -2.257 26.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.095 4.095 3 N -0.145 5.145 4 N -0.178 5.178 5 H 0.303 0.697 6 C -0.053 4.053 7 C -0.148 4.148 8 C -0.131 4.131 9 N -0.277 5.277 10 C 0.335 3.665 11 O -0.443 6.443 12 C -0.260 4.260 13 C -0.002 4.002 14 C -0.170 4.170 15 C -0.054 4.054 16 C -0.227 4.227 17 C 0.076 3.924 18 O -0.126 6.126 19 C -0.492 4.492 20 H 0.122 0.878 21 C -0.218 4.218 22 N -0.551 5.551 23 Si 0.836 3.164 24 H -0.181 1.181 25 H -0.196 1.196 26 H -0.182 1.182 27 C -0.269 4.269 28 C -0.059 4.059 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.263 0.737 36 H 0.171 0.829 37 H 0.145 0.855 38 H 0.180 0.820 39 H 0.140 0.860 40 H 0.084 0.916 41 H 0.141 0.859 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.069 21.848 -2.021 27.196 hybrid contribution -0.310 -1.392 0.189 1.438 sum 15.759 20.457 -1.832 25.887 Atomic orbital electron populations 1.20201 0.86163 1.01821 1.02366 1.22531 0.97803 0.89822 0.99346 1.77205 0.87860 1.22446 1.27006 1.46036 1.06773 1.04831 1.60170 0.69664 1.21318 0.96402 0.85479 1.02122 1.20620 0.91247 0.97751 1.05135 1.17392 0.91581 0.85718 1.18429 1.42465 1.22832 1.06058 1.56314 1.18581 0.80472 0.88930 0.78562 1.90865 1.59203 1.51549 1.42635 1.22633 0.99874 0.94949 1.08498 1.22150 0.93569 0.92846 0.91663 1.18781 0.97748 0.94016 1.06411 1.21310 0.99020 0.90113 0.95002 1.20438 0.95915 0.98663 1.07668 1.20211 0.93367 0.85180 0.93613 1.83885 1.42097 1.24971 1.61606 1.21843 1.02449 0.95806 1.29126 0.87767 1.26592 1.02903 0.93873 0.98389 1.70139 1.41406 1.02118 1.41392 0.84661 0.75568 0.77984 0.78145 1.18141 1.19637 1.18176 1.21200 1.03286 0.94573 1.07890 1.21319 0.94478 0.94661 0.95424 0.91025 0.91993 0.91017 0.87934 0.88773 0.89011 0.73687 0.82856 0.85529 0.81983 0.85961 0.91630 0.85913 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.18 8.34 71.23 0.59 -0.59 16 2 C 0.07 1.83 6.90 43.20 0.30 2.13 16 3 N -0.32 -7.74 12.69 -47.14 -0.60 -8.34 16 4 N -0.47 -7.29 7.40 -47.26 -0.35 -7.64 16 5 H 0.46 3.72 8.96 -213.35 -1.91 1.81 16 6 C 0.08 1.12 7.26 41.37 0.30 1.42 16 7 C -0.09 -0.42 10.38 71.24 0.74 0.32 16 8 C -0.03 -0.56 6.57 37.64 0.25 -0.31 16 9 N -0.63 -10.86 5.39 -307.98 -1.66 -12.52 16 10 C 0.54 12.27 6.79 86.32 0.59 12.85 16 11 O -0.56 -16.45 11.38 -4.50 -0.05 -16.50 16 12 C -0.24 -4.83 9.41 23.61 0.22 -4.60 16 13 C 0.02 0.43 9.45 23.82 0.23 0.65 16 14 C -0.17 -4.96 5.87 -20.13 -0.12 -5.08 16 15 C -0.04 -1.09 9.40 22.55 0.21 -0.87 16 16 C -0.21 -8.04 9.97 22.34 0.22 -7.81 16 17 C 0.13 6.02 6.66 22.72 0.15 6.17 16 18 O -0.22 -12.66 9.74 -20.39 -0.20 -12.86 16 19 C -0.42 -23.29 9.48 67.93 0.64 -22.65 16 20 H 0.11 5.32 5.18 -2.91 -0.02 5.30 16 21 C -0.02 -1.03 5.49 84.86 0.47 -0.57 16 22 N -0.91 -54.14 13.67 21.62 0.30 -53.85 16 23 Si 1.02 41.31 29.55 68.60 2.03 43.34 16 24 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 25 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 26 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 27 C -0.25 -10.32 9.14 22.34 0.20 -10.11 16 28 C -0.04 -1.34 9.78 22.55 0.22 -1.12 16 29 H 0.07 1.98 7.34 -2.39 -0.02 1.96 16 30 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.07 1.86 5.94 -2.39 -0.01 1.84 16 32 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.09 0.14 8.14 -2.38 -0.02 0.12 16 34 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.42 4.15 8.81 -92.71 -0.82 3.33 16 36 H 0.15 2.20 6.07 -2.91 -0.02 2.18 16 37 H 0.13 3.13 7.52 -2.91 -0.02 3.11 16 38 H 0.16 3.30 6.16 -2.91 -0.02 3.28 16 39 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 41 H 0.12 5.15 5.62 -2.91 -0.02 5.13 16 42 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -77.37 360.63 3.06 -74.32 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -1.62 Total: 24.23 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 5.22 Total: -30.18 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -2.31 Total: -82.35 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.25 Total: -29.36 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -77.37 3.06 -74.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058367178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.515 kcal (2) G-P(sol) polarization free energy of solvation -77.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds