Wall clock time and date at job start Tue Mar 31 2020 15:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35414 * 119.58165 * 2 1 4 4 C 1.41917 * 117.82656 * 180.25019 * 3 2 1 5 5 O 1.22110 * 121.40574 * 179.76195 * 4 3 2 6 6 C 1.47128 * 117.18614 * 359.73366 * 4 3 2 7 7 C 1.47663 * 120.62485 * 180.02562 * 6 4 3 8 8 O 1.21575 * 119.99901 * 359.97343 * 7 6 4 9 9 N 1.34774 * 120.00525 * 179.97438 * 7 6 4 10 10 C 1.46498 * 120.00375 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47257 * 325.00949 * 10 9 7 12 12 C 1.53001 * 109.46927 * 85.00261 * 10 9 7 13 13 C 1.50701 * 109.47495 * 205.00103 * 10 9 7 14 14 H 1.07995 * 120.00113 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00026 * 180.02562 * 13 10 9 16 16 N 1.31517 * 119.99995 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99924 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47127 * 60.00187 * 17 15 13 19 19 H 1.48499 * 109.47133 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47398 * 300.00362 * 17 15 13 21 21 N 1.31641 * 118.75940 * 0.02562 * 6 4 3 22 22 N 1.28191 * 122.09512 * 359.97438 * 21 6 4 23 23 C 1.39893 * 118.35038 * 180.02562 * 22 21 6 24 24 C 1.38917 * 120.07256 * 313.99818 * 23 22 21 25 25 C 1.38096 * 119.92410 * 179.97438 * 24 23 22 26 26 C 1.38298 * 120.07407 * 0.02562 * 25 24 23 27 27 C 1.38287 * 120.14890 * 0.02562 * 26 25 24 28 28 C 1.38104 * 120.07722 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47228 * 266.01929 * 1 2 3 30 30 H 1.08993 * 109.47621 * 26.02270 * 1 2 3 31 31 H 1.09008 * 109.47018 * 146.02485 * 1 2 3 32 32 H 1.07998 * 121.09103 * 359.97438 * 3 2 1 33 33 H 0.96999 * 120.00199 * 0.02562 * 9 7 6 34 34 H 1.09003 * 109.47462 * 60.00019 * 12 10 9 35 35 H 1.08997 * 109.47395 * 179.97438 * 12 10 9 36 36 H 1.09004 * 109.47080 * 300.00206 * 12 10 9 37 37 H 0.96993 * 119.99658 * 179.97438 * 16 15 13 38 38 H 1.08004 * 120.03580 * 0.25581 * 24 23 22 39 39 H 1.08003 * 119.96219 * 180.02562 * 25 24 23 40 40 H 1.07996 * 119.92077 * 180.02562 * 26 25 24 41 41 H 1.08004 * 119.96615 * 179.97438 * 27 26 25 42 42 H 1.07993 * 120.03964 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1755 1.1776 0.0000 4 6 3.5940 1.1342 -0.0055 5 8 4.2619 2.1564 -0.0101 6 6 4.2258 -0.1945 -0.0047 7 6 5.6964 -0.3282 -0.0096 8 8 6.3970 0.6653 -0.0148 9 7 6.2619 -1.5515 -0.0082 10 6 7.7209 -1.6841 -0.0136 11 1 8.1566 -0.8803 -0.6070 12 6 8.2458 -1.6009 1.4211 13 6 8.1023 -3.0137 -0.6117 14 1 7.3348 -3.6920 -0.9540 15 6 9.4313 -3.3642 -0.7220 16 7 10.3660 -2.5385 -0.3047 17 14 9.9040 -5.0126 -1.4627 18 1 9.3949 -5.0938 -2.8553 19 1 11.3829 -5.1474 -1.4671 20 1 9.3101 -6.1073 -0.6540 21 7 3.4556 -1.2621 0.0005 22 7 2.1764 -1.1791 0.0053 23 6 1.4337 -2.3646 0.0112 24 6 1.7685 -3.4000 -0.8524 25 6 1.0336 -4.5691 -0.8436 26 6 -0.0348 -4.7097 0.0232 27 6 -0.3714 -3.6805 0.8833 28 6 0.3586 -2.5082 0.8791 29 1 -0.3633 -0.0713 1.0252 30 1 -0.3634 0.9234 -0.4508 31 1 -0.3633 -0.8523 -0.5743 32 1 1.6465 2.1192 -0.0004 33 1 5.7030 -2.3443 -0.0044 34 1 7.8102 -2.4047 2.0146 35 1 9.3313 -1.7000 1.4172 36 1 7.9699 -0.6392 1.8537 37 1 11.3008 -2.7853 -0.3819 38 1 2.6053 -3.2924 -1.5266 39 1 1.2936 -5.3746 -1.5144 40 1 -0.6076 -5.6252 0.0282 41 1 -1.2066 -3.7933 1.5587 42 1 0.0950 -1.7047 1.5508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064346271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:28 Heat of formation + Delta-G solvation = 34.921841 kcal Electronic energy + Delta-G solvation = -27254.897926 eV Core-core repulsion = 23395.037525 eV Total energy + Delta-G solvation = -3859.860401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.38945 -39.63440 -38.55362 -37.78165 -34.96436 -34.69061 -33.44352 -32.26946 -31.48456 -30.02763 -28.91758 -28.28046 -25.68138 -25.19046 -23.62189 -23.00364 -22.26634 -21.45648 -19.77807 -18.93075 -18.47556 -17.15938 -16.73916 -16.65409 -16.01805 -15.63477 -15.15267 -15.07327 -14.77281 -14.34074 -14.28295 -14.09976 -13.94243 -13.62571 -13.46810 -13.31419 -13.14423 -13.00686 -12.69931 -12.34182 -12.05237 -11.70599 -11.62508 -11.38981 -11.06892 -10.93218 -10.71637 -10.35184 -10.27164 -10.18165 -9.69451 -9.59956 -9.45495 -9.01396 -8.87496 -8.50617 -8.15480 -7.82520 -6.07539 -4.16754 0.40302 0.69109 0.86250 1.21556 1.83817 3.12441 3.21638 3.28414 3.33313 3.34545 3.65677 3.95120 4.00830 4.19090 4.34003 4.39037 4.42128 4.53573 4.63466 4.66928 4.86281 4.90397 5.02093 5.03015 5.24407 5.25672 5.40850 5.49250 5.50671 5.61651 5.80230 5.85083 6.00220 6.01824 6.17179 6.51932 6.88955 7.03631 7.20063 7.48164 7.59132 7.69445 7.76717 7.89942 7.97549 8.19220 8.69510 8.81450 9.12860 9.49968 10.98581 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.003867 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.936994 B = 7239.361177 C = 9325.002638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.130 3.870 3 C -0.268 4.268 4 C 0.379 3.621 5 O -0.448 6.448 6 C -0.012 4.012 7 C 0.568 3.432 8 O -0.513 6.513 9 N -0.690 5.690 10 C 0.264 3.736 11 H 0.052 0.948 12 C -0.148 4.148 13 C -0.533 4.533 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.883 5.883 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 N -0.181 5.181 22 N -0.274 5.274 23 C 0.121 3.879 24 C -0.094 4.094 25 C -0.102 4.102 26 C -0.111 4.111 27 C -0.106 4.106 28 C -0.120 4.120 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.163 0.837 33 H 0.394 0.606 34 H 0.027 0.973 35 H 0.092 0.908 36 H 0.016 0.984 37 H 0.265 0.735 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.775 -4.019 1.297 28.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.022 3.978 3 C -0.294 4.294 4 C 0.259 3.741 5 O -0.323 6.323 6 C -0.192 4.192 7 C 0.348 3.652 8 O -0.385 6.385 9 N -0.339 5.339 10 C 0.162 3.838 11 H 0.070 0.930 12 C -0.206 4.206 13 C -0.571 4.571 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.730 3.270 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 N -0.008 5.008 22 N -0.066 5.066 23 C 0.031 3.969 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.140 4.140 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.181 0.819 33 H 0.227 0.773 34 H 0.046 0.954 35 H 0.110 0.890 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -26.551 -3.644 1.306 26.832 hybrid contribution -0.154 -0.558 -0.330 0.666 sum -26.705 -4.202 0.977 27.052 Atomic orbital electron populations 1.21361 0.87446 1.05308 1.04245 1.21343 0.96158 0.85733 0.94543 1.22534 0.95557 0.97610 1.13660 1.18863 0.89020 0.88499 0.77695 1.90865 1.66886 1.35210 1.39323 1.25861 0.96356 0.91311 1.05638 1.17104 0.83401 0.85243 0.79451 1.90854 1.60766 1.37206 1.49721 1.46470 1.10752 1.05820 1.70857 1.18836 0.72815 0.97872 0.94244 0.93034 1.22087 1.04507 0.96820 0.97216 1.21154 0.92409 1.01903 1.41641 0.92076 1.24879 0.96184 0.97393 0.95194 1.69897 1.00507 1.35782 1.45845 0.86499 0.77389 0.83512 0.79622 1.20197 1.21131 1.20184 1.71448 0.90738 1.30869 1.07757 1.41535 1.01489 1.04730 1.58807 1.17615 0.94253 0.85652 0.99333 1.21219 1.00061 0.92638 0.97438 1.21156 0.94899 0.96997 0.99015 1.21355 0.97063 0.99065 0.95447 1.21021 0.99865 0.92353 0.99184 1.21258 0.95797 0.99272 0.97655 0.88913 0.88767 0.89521 0.81901 0.77278 0.95415 0.88970 0.96476 0.92506 0.84410 0.84669 0.85188 0.84831 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.67 8.19 36.01 0.29 -0.38 16 2 C 0.13 1.36 6.50 -81.94 -0.53 0.83 16 3 C -0.27 -3.46 9.73 -39.18 -0.38 -3.84 16 4 C 0.38 7.04 6.99 -34.57 -0.24 6.80 16 5 O -0.45 -10.16 16.44 -15.15 -0.25 -10.41 16 6 C -0.01 -0.23 7.04 -80.49 -0.57 -0.79 16 7 C 0.57 13.22 7.78 -12.41 -0.10 13.13 16 8 O -0.51 -14.04 15.23 -14.67 -0.22 -14.26 16 9 N -0.69 -15.83 5.06 -55.94 -0.28 -16.11 16 10 C 0.26 7.04 2.56 -69.08 -0.18 6.86 16 11 H 0.05 1.57 7.58 -51.93 -0.39 1.18 16 12 C -0.15 -3.85 9.26 37.16 0.34 -3.50 16 13 C -0.53 -14.47 8.73 -34.44 -0.30 -14.77 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 16 N -0.88 -25.33 11.32 55.43 0.63 -24.70 16 17 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 N -0.18 -2.85 9.70 34.59 0.34 -2.51 16 22 N -0.27 -3.33 3.40 -6.92 -0.02 -3.36 16 23 C 0.12 1.17 5.12 -83.68 -0.43 0.74 16 24 C -0.09 -0.88 9.60 -39.38 -0.38 -1.25 16 25 C -0.10 -0.71 10.04 -39.61 -0.40 -1.11 16 26 C -0.11 -0.62 10.04 -39.54 -0.40 -1.02 16 27 C -0.11 -0.56 10.04 -39.61 -0.40 -0.96 16 28 C -0.12 -0.82 7.53 -39.38 -0.30 -1.12 16 29 H 0.09 0.33 6.69 -51.93 -0.35 -0.02 16 30 H 0.09 0.37 8.04 -51.93 -0.42 -0.05 16 31 H 0.09 0.42 6.34 -51.92 -0.33 0.09 16 32 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.39 8.06 7.91 -40.82 -0.32 7.73 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.14 1.40 8.01 -52.48 -0.42 0.98 16 39 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 40 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.13 0.38 8.06 -52.48 -0.42 -0.04 16 42 H 0.14 0.71 5.85 -52.49 -0.31 0.40 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -35.96 357.49 -8.43 -44.38 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -4.93 Total: 4.40 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -4.05 Total: 1.34 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.66 Total: -46.68 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.47 Total: -24.67 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.96 -8.43 -44.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.307 kcal (2) G-P(sol) polarization free energy of solvation -35.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds