Wall clock time and date at job start Tue Mar 31 2020 15:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35414 * 119.58165 * 2 1 4 4 C 1.41917 * 117.82656 * 180.25019 * 3 2 1 5 5 O 1.22110 * 121.40574 * 179.76195 * 4 3 2 6 6 C 1.47128 * 117.18614 * 359.73366 * 4 3 2 7 7 C 1.47663 * 120.62485 * 180.02562 * 6 4 3 8 8 O 1.21575 * 119.99901 * 359.97343 * 7 6 4 9 9 N 1.34774 * 120.00525 * 179.97438 * 7 6 4 10 10 C 1.46498 * 120.00375 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47257 * 325.00949 * 10 9 7 12 12 C 1.53001 * 109.46927 * 85.00261 * 10 9 7 13 13 C 1.50701 * 109.47495 * 205.00103 * 10 9 7 14 14 H 1.07995 * 120.00113 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00026 * 180.02562 * 13 10 9 16 16 N 1.31517 * 119.99995 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99924 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47127 * 60.00187 * 17 15 13 19 19 H 1.48499 * 109.47133 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47398 * 300.00362 * 17 15 13 21 21 N 1.31641 * 118.75940 * 0.02562 * 6 4 3 22 22 N 1.28191 * 122.09512 * 359.97438 * 21 6 4 23 23 C 1.39893 * 118.35038 * 180.02562 * 22 21 6 24 24 C 1.38917 * 120.07256 * 313.99818 * 23 22 21 25 25 C 1.38096 * 119.92410 * 179.97438 * 24 23 22 26 26 C 1.38298 * 120.07407 * 0.02562 * 25 24 23 27 27 C 1.38287 * 120.14890 * 0.02562 * 26 25 24 28 28 C 1.38104 * 120.07722 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47228 * 266.01929 * 1 2 3 30 30 H 1.08993 * 109.47621 * 26.02270 * 1 2 3 31 31 H 1.09008 * 109.47018 * 146.02485 * 1 2 3 32 32 H 1.07998 * 121.09103 * 359.97438 * 3 2 1 33 33 H 0.96999 * 120.00199 * 0.02562 * 9 7 6 34 34 H 1.09003 * 109.47462 * 60.00019 * 12 10 9 35 35 H 1.08997 * 109.47395 * 179.97438 * 12 10 9 36 36 H 1.09004 * 109.47080 * 300.00206 * 12 10 9 37 37 H 0.96993 * 119.99658 * 179.97438 * 16 15 13 38 38 H 1.08004 * 120.03580 * 0.25581 * 24 23 22 39 39 H 1.08003 * 119.96219 * 180.02562 * 25 24 23 40 40 H 1.07996 * 119.92077 * 180.02562 * 26 25 24 41 41 H 1.08004 * 119.96615 * 179.97438 * 27 26 25 42 42 H 1.07993 * 120.03964 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1755 1.1776 0.0000 4 6 3.5940 1.1342 -0.0055 5 8 4.2619 2.1564 -0.0101 6 6 4.2258 -0.1945 -0.0047 7 6 5.6964 -0.3282 -0.0096 8 8 6.3970 0.6653 -0.0148 9 7 6.2619 -1.5515 -0.0082 10 6 7.7209 -1.6841 -0.0136 11 1 8.1566 -0.8803 -0.6070 12 6 8.2458 -1.6009 1.4211 13 6 8.1023 -3.0137 -0.6117 14 1 7.3348 -3.6920 -0.9540 15 6 9.4313 -3.3642 -0.7220 16 7 10.3660 -2.5385 -0.3047 17 14 9.9040 -5.0126 -1.4627 18 1 9.3949 -5.0938 -2.8553 19 1 11.3829 -5.1474 -1.4671 20 1 9.3101 -6.1073 -0.6540 21 7 3.4556 -1.2621 0.0005 22 7 2.1764 -1.1791 0.0053 23 6 1.4337 -2.3646 0.0112 24 6 1.7685 -3.4000 -0.8524 25 6 1.0336 -4.5691 -0.8436 26 6 -0.0348 -4.7097 0.0232 27 6 -0.3714 -3.6805 0.8833 28 6 0.3586 -2.5082 0.8791 29 1 -0.3633 -0.0713 1.0252 30 1 -0.3634 0.9234 -0.4508 31 1 -0.3633 -0.8523 -0.5743 32 1 1.6465 2.1192 -0.0004 33 1 5.7030 -2.3443 -0.0044 34 1 7.8102 -2.4047 2.0146 35 1 9.3313 -1.7000 1.4172 36 1 7.9699 -0.6392 1.8537 37 1 11.3008 -2.7853 -0.3819 38 1 2.6053 -3.2924 -1.5266 39 1 1.2936 -5.3746 -1.5144 40 1 -0.6076 -5.6252 0.0282 41 1 -1.2066 -3.7933 1.5587 42 1 0.0950 -1.7047 1.5508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064346271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:27 Heat of formation + Delta-G solvation = 10.852085 kcal Electronic energy + Delta-G solvation = -27255.941669 eV Core-core repulsion = 23395.037525 eV Total energy + Delta-G solvation = -3860.904144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.48542 -40.89010 -39.88389 -39.08403 -36.75486 -36.00318 -34.54886 -34.18778 -32.09009 -31.34872 -30.27044 -29.28313 -27.39119 -26.91501 -24.41602 -24.02285 -23.35394 -22.75816 -21.65710 -20.16876 -19.78481 -18.58533 -17.73368 -17.59339 -17.28038 -17.17151 -17.08889 -16.21353 -16.08632 -15.56252 -15.41966 -15.16838 -14.98414 -14.78564 -14.62081 -14.46571 -14.28094 -13.97502 -13.90482 -13.74091 -13.28184 -13.04345 -12.91788 -12.83148 -12.77017 -12.41536 -12.30915 -12.17122 -12.09961 -11.42384 -11.32166 -11.17136 -10.62936 -10.45767 -10.29234 -9.97722 -9.89888 -9.18196 -8.18685 -6.37558 -0.68568 -0.38347 0.30547 0.35909 0.83374 1.43774 1.47424 1.55358 1.65502 2.09638 2.41694 2.44218 2.63833 3.01526 3.11191 3.15217 3.23277 3.80315 3.85153 3.88591 3.97764 4.21418 4.27863 4.42878 4.43680 4.57036 4.61849 4.69260 4.74072 4.86106 4.88219 5.00057 5.02600 5.05105 5.22358 5.30905 5.35104 5.48420 5.52165 5.52653 5.61316 5.83156 5.92455 6.03157 6.45117 6.60372 6.67006 6.82870 7.23357 7.39310 8.88192 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.003867 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.936994 B = 7239.361177 C = 9325.002638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.149 3.851 3 C -0.269 4.269 4 C 0.363 3.637 5 O -0.520 6.520 6 C -0.065 4.065 7 C 0.566 3.434 8 O -0.567 6.567 9 N -0.685 5.685 10 C 0.269 3.731 11 H 0.000 1.000 12 C -0.133 4.133 13 C -0.549 4.549 14 H 0.074 0.926 15 C 0.015 3.985 16 N -0.918 5.918 17 Si 0.979 3.021 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.261 1.261 21 N -0.161 5.161 22 N -0.252 5.252 23 C 0.079 3.921 24 C -0.112 4.112 25 C -0.109 4.109 26 C -0.098 4.098 27 C -0.098 4.098 28 C -0.108 4.108 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.194 0.806 33 H 0.406 0.594 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.008 0.992 37 H 0.267 0.733 38 H 0.116 0.884 39 H 0.148 0.852 40 H 0.160 0.840 41 H 0.170 0.830 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.223 -7.521 1.813 34.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.040 3.960 3 C -0.294 4.294 4 C 0.250 3.750 5 O -0.402 6.402 6 C -0.239 4.239 7 C 0.350 3.650 8 O -0.444 6.444 9 N -0.334 5.334 10 C 0.166 3.834 11 H 0.018 0.982 12 C -0.192 4.192 13 C -0.587 4.587 14 H 0.092 0.908 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.802 3.198 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.186 1.186 21 N 0.009 4.991 22 N -0.045 5.045 23 C -0.009 4.009 24 C -0.132 4.132 25 C -0.128 4.128 26 C -0.116 4.116 27 C -0.116 4.116 28 C -0.128 4.128 29 H 0.144 0.856 30 H 0.136 0.864 31 H 0.118 0.882 32 H 0.211 0.789 33 H 0.242 0.758 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.027 0.973 37 H 0.076 0.924 38 H 0.134 0.866 39 H 0.166 0.834 40 H 0.178 0.822 41 H 0.188 0.812 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -32.051 -7.201 1.824 32.901 hybrid contribution 1.183 0.261 -0.486 1.305 sum -30.868 -6.939 1.339 31.667 Atomic orbital electron populations 1.21646 0.82437 1.07255 1.06709 1.22152 0.98845 0.83909 0.91067 1.22604 0.92465 1.00118 1.14235 1.19457 0.91337 0.87331 0.76846 1.90824 1.68484 1.36573 1.44321 1.25000 0.94202 0.92784 1.11961 1.17615 0.85451 0.84209 0.77747 1.90799 1.62896 1.38731 1.51951 1.46186 1.09432 1.06569 1.71230 1.18502 0.74784 0.96416 0.93694 0.98198 1.21909 1.03264 0.96845 0.97193 1.21434 0.93209 1.01915 1.42109 0.90817 1.25861 0.95926 1.01436 0.95311 1.70057 1.00903 1.37910 1.46695 0.85305 0.76967 0.78587 0.78915 1.19505 1.20951 1.18553 1.71304 0.92808 1.29907 1.05071 1.42130 1.00455 1.07015 1.54897 1.18002 0.95877 0.84974 1.02081 1.21226 1.00256 0.93821 0.97862 1.21377 0.95214 0.96355 0.99820 1.21797 0.95833 1.00182 0.93772 1.21479 1.00067 0.91106 0.98923 1.21541 0.94071 1.00588 0.96570 0.85617 0.86361 0.88160 0.78883 0.75814 0.93865 0.90813 0.97287 0.92369 0.86596 0.83408 0.82224 0.81227 0.82441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 8.19 71.24 0.58 -0.05 16 2 C 0.15 2.69 6.50 41.33 0.27 2.96 16 3 C -0.27 -6.72 9.73 22.53 0.22 -6.51 16 4 C 0.36 14.46 6.99 25.52 0.18 14.64 16 5 O -0.52 -25.97 16.44 13.42 0.22 -25.75 16 6 C -0.06 -2.65 7.04 44.00 0.31 -2.34 16 7 C 0.57 28.86 7.78 86.73 0.67 29.54 16 8 O -0.57 -34.47 15.23 15.14 0.23 -34.24 16 9 N -0.68 -33.66 5.06 -449.15 -2.27 -35.93 16 10 C 0.27 15.34 2.56 44.25 0.11 15.46 16 11 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 12 C -0.13 -7.37 9.26 71.98 0.67 -6.71 16 13 C -0.55 -30.71 8.73 25.60 0.22 -30.49 16 14 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 15 C 0.01 0.82 5.30 84.65 0.45 1.27 16 16 N -0.92 -54.61 11.32 21.45 0.24 -54.37 16 17 Si 0.98 42.98 29.54 68.60 2.03 45.01 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 21 N -0.16 -5.15 9.70 -44.48 -0.43 -5.58 16 22 N -0.25 -5.71 3.40 -175.80 -0.60 -6.31 16 23 C 0.08 1.28 5.12 38.18 0.20 1.48 16 24 C -0.11 -1.88 9.60 22.40 0.21 -1.66 16 25 C -0.11 -1.16 10.04 22.25 0.22 -0.94 16 26 C -0.10 -0.56 10.04 22.30 0.22 -0.33 16 27 C -0.10 -0.43 10.04 22.25 0.22 -0.20 16 28 C -0.11 -0.91 7.53 22.40 0.17 -0.74 16 29 H 0.13 -0.02 6.69 -2.39 -0.02 -0.03 16 30 H 0.12 0.21 8.04 -2.39 -0.02 0.19 16 31 H 0.10 0.38 6.34 -2.38 -0.02 0.36 16 32 H 0.19 3.55 8.06 -2.91 -0.02 3.52 16 33 H 0.41 17.47 7.91 -92.71 -0.73 16.74 16 34 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.07 4.34 6.07 -2.39 -0.01 4.33 16 36 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 37 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.12 2.39 8.01 -2.91 -0.02 2.36 16 39 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 40 H 0.16 0.03 8.06 -2.91 -0.02 0.01 16 41 H 0.17 -0.35 8.06 -2.91 -0.02 -0.38 16 42 H 0.16 0.61 5.85 -2.91 -0.02 0.59 16 Total: -1.00 -89.57 357.49 4.69 -84.88 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.34 Total: 16.89 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 4.94 Total: 15.38 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -3.06 Total: -102.18 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: 0.45 Total: -59.98 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -89.57 4.69 -84.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.732 kcal (2) G-P(sol) polarization free energy of solvation -89.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds