Wall clock time and date at job start Tue Mar 31 2020 15:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39722 * 125.77876 * 2 1 4 4 C 1.36158 * 107.85768 * 180.16585 * 3 2 1 5 5 N 1.39343 * 126.26541 * 179.84435 * 4 3 2 6 6 C 1.34779 * 119.99583 * 359.69551 * 5 4 3 7 7 O 1.21741 * 120.00283 * 359.97438 * 6 5 4 8 8 C 1.46210 * 119.99584 * 180.02562 * 6 5 4 9 9 C 1.35049 * 119.99772 * 179.97438 * 8 6 5 10 10 C 1.46955 * 119.99653 * 179.97438 * 9 8 6 11 11 C 1.40036 * 120.09540 * 180.02562 * 10 9 8 12 12 C 1.37594 * 119.89268 * 179.97438 * 11 10 9 13 13 C 1.39186 * 120.10275 * 0.24398 * 12 11 10 14 14 O 1.35570 * 119.89530 * 179.75160 * 13 12 11 15 15 C 1.34785 * 117.00358 * 354.44497 * 14 13 12 16 16 H 1.08000 * 119.99371 * 5.06072 * 15 14 13 17 17 C 1.38717 * 119.99804 * 185.06141 * 15 14 13 18 18 N 1.31506 * 119.99455 * 180.02562 * 17 15 14 19 19 Si 1.86792 * 120.00326 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47200 * 90.00278 * 19 17 15 21 21 H 1.48503 * 109.47241 * 210.00236 * 19 17 15 22 22 H 1.48501 * 109.47142 * 330.00015 * 19 17 15 23 23 C 1.39173 * 120.20282 * 359.50012 * 13 12 11 24 24 C 1.37602 * 120.10315 * 0.50463 * 23 13 12 25 25 N 1.35808 * 107.47091 * 359.58488 * 4 3 2 26 26 C 1.46501 * 126.09638 * 180.22352 * 25 4 3 27 27 N 1.30835 * 125.77468 * 179.70296 * 2 1 3 28 28 H 1.08997 * 109.47193 * 270.27703 * 1 2 3 29 29 H 1.09000 * 109.46977 * 30.27270 * 1 2 3 30 30 H 1.08997 * 109.47149 * 150.27592 * 1 2 3 31 31 H 1.08009 * 126.06962 * 0.02562 * 3 2 1 32 32 H 0.96995 * 120.00061 * 179.68942 * 5 4 3 33 33 H 1.08003 * 119.99907 * 359.97438 * 8 6 5 34 34 H 1.08003 * 120.00321 * 359.97438 * 9 8 6 35 35 H 1.07997 * 120.05151 * 359.95181 * 11 10 9 36 36 H 1.08001 * 119.95149 * 179.97438 * 12 11 10 37 37 H 0.97001 * 119.99729 * 179.97438 * 18 17 15 38 38 H 1.08004 * 119.95191 * 180.25599 * 23 13 12 39 39 H 1.08000 * 120.05434 * 179.77151 * 24 23 13 40 40 H 1.08997 * 109.47006 * 90.00487 * 26 25 4 41 41 H 1.09001 * 109.47414 * 210.00330 * 26 25 4 42 42 H 1.09000 * 109.47005 * 330.00334 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3240 1.1335 0.0000 4 6 3.6195 0.7146 -0.0038 5 7 4.7494 1.5299 -0.0081 6 6 4.6128 2.8708 -0.0150 7 8 3.5023 3.3695 -0.0180 8 6 5.7985 3.7263 -0.0201 9 6 5.6616 5.0698 -0.0276 10 6 6.8533 5.9297 -0.0322 11 6 6.7138 7.3231 -0.0394 12 6 7.8324 8.1242 -0.0432 13 6 9.1011 7.5518 -0.0449 14 8 10.2004 8.3451 -0.0536 15 6 9.9967 9.6718 -0.1766 16 1 8.9910 10.0655 -0.1803 17 6 11.0787 10.5312 -0.2984 18 7 10.8799 11.8257 -0.4178 19 14 12.8180 9.8501 -0.2912 20 1 13.2310 9.5327 -1.6818 21 1 13.7431 10.8608 0.2814 22 1 12.8627 8.6153 0.5325 23 6 9.2446 6.1675 -0.0323 24 6 8.1316 5.3583 -0.0287 25 7 3.6088 -0.6434 0.0034 26 6 4.7858 -1.5158 0.0071 27 7 2.2719 -1.0615 0.0055 28 1 -0.3633 0.0050 1.0276 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3633 -0.8924 -0.5095 31 1 1.9875 2.1599 0.0004 32 1 5.6343 1.1326 -0.0060 33 1 6.7837 3.2838 -0.0179 34 1 4.6764 5.5123 -0.0303 35 1 5.7298 7.7681 -0.0425 36 1 7.7259 9.1990 -0.0492 37 1 11.6365 12.4267 -0.5026 38 1 10.2310 5.7276 -0.0295 39 1 8.2439 4.2842 -0.0227 40 1 5.0783 -1.7268 1.0357 41 1 4.5475 -2.4498 -0.5017 42 1 5.6073 -1.0198 -0.5098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075568726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:42 Heat of formation + Delta-G solvation = 64.153990 kcal Electronic energy + Delta-G solvation = -25198.862293 eV Core-core repulsion = 21340.269493 eV Total energy + Delta-G solvation = -3858.592800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63995 -39.70495 -39.34401 -37.17267 -35.29773 -33.76364 -33.42101 -32.56297 -30.62254 -30.08410 -29.36720 -28.22133 -25.84455 -25.65950 -23.92852 -22.41746 -21.73102 -20.61249 -20.24722 -19.24440 -18.16504 -17.70849 -17.46246 -17.03394 -16.12417 -15.65616 -15.08934 -15.02931 -14.82931 -14.42985 -14.15938 -14.07050 -13.94757 -13.76311 -13.73409 -13.33329 -12.93426 -12.73793 -12.62544 -12.54466 -12.50128 -12.44781 -11.99427 -11.93665 -11.31741 -11.09827 -11.02396 -10.85161 -10.73402 -10.33868 -9.96300 -9.79062 -9.62740 -9.01907 -8.98106 -8.55588 -8.24690 -7.34233 -6.67368 -4.30797 0.75025 1.64453 1.94057 1.95881 2.35091 2.72285 2.90844 3.07036 3.11021 3.23660 3.36906 4.02768 4.18455 4.33850 4.53411 4.56454 4.72179 4.79085 4.87091 4.98846 5.02317 5.04946 5.31883 5.33133 5.41602 5.45154 5.48955 5.62922 5.64655 5.77915 5.85535 5.89763 6.00207 6.20307 6.27859 6.41500 6.57763 6.62960 6.80199 6.83740 6.99975 7.04923 7.14004 7.33528 7.55333 7.61278 7.76577 7.95433 8.65400 9.24843 10.38549 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.034721 B = 0.001783 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.224120 B =15700.085170 C =16479.891466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.084 3.916 3 C -0.279 4.279 4 C 0.313 3.687 5 N -0.651 5.651 6 C 0.564 3.436 7 O -0.521 6.521 8 C -0.285 4.285 9 C 0.052 3.948 10 C -0.196 4.196 11 C -0.032 4.032 12 C -0.231 4.231 13 C 0.175 3.825 14 O -0.199 6.199 15 C -0.392 4.392 16 H 0.112 0.888 17 C 0.067 3.933 18 N -0.863 5.863 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.258 1.258 23 C -0.200 4.200 24 C -0.042 4.042 25 N -0.397 5.397 26 C 0.101 3.899 27 N -0.298 5.298 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.174 0.826 32 H 0.410 0.590 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.138 0.862 37 H 0.284 0.716 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.417 -21.351 0.681 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.083 4.083 3 C -0.311 4.311 4 C 0.093 3.907 5 N -0.298 5.298 6 C 0.357 3.643 7 O -0.398 6.398 8 C -0.306 4.306 9 C 0.033 3.967 10 C -0.197 4.197 11 C -0.051 4.051 12 C -0.250 4.250 13 C 0.120 3.880 14 O -0.102 6.102 15 C -0.467 4.467 16 H 0.129 0.871 17 C -0.139 4.139 18 N -0.499 5.499 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.182 1.182 23 C -0.220 4.220 24 C -0.061 4.061 25 N -0.186 5.186 26 C -0.040 4.040 27 N -0.121 5.121 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.191 0.809 32 H 0.245 0.755 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.612 -22.054 0.678 24.484 hybrid contribution 1.488 0.515 -0.020 1.574 sum -9.124 -21.539 0.658 23.401 Atomic orbital electron populations 1.20174 0.86545 1.03266 1.02971 1.22241 0.97015 0.90639 0.98363 1.21576 0.88914 1.01224 1.19344 1.18174 0.89190 0.82106 1.01186 1.42875 1.06880 1.06265 1.73793 1.18443 0.90423 0.80145 0.75260 1.90742 1.26953 1.73519 1.48549 1.22192 0.96304 0.94092 1.18057 1.22354 0.97807 0.92559 0.84004 1.18479 0.92096 0.92957 1.16193 1.21056 0.98014 0.92112 0.93905 1.21230 0.91661 1.01338 1.10750 1.19381 0.86579 0.90344 0.91700 1.83502 1.29668 1.19675 1.77310 1.20899 0.97234 0.77122 1.51423 0.87095 1.24554 0.99987 0.94338 0.95053 1.69613 1.33425 1.01946 1.44866 0.86149 0.81671 0.79523 0.79452 1.19589 1.20440 1.18186 1.20145 0.99014 0.90577 1.12219 1.20878 0.91132 0.98448 0.95597 1.48549 1.06095 1.02179 1.61747 1.21782 0.83910 0.95084 1.03248 1.77348 0.84948 1.21701 1.28135 0.90506 0.90230 0.91049 0.80895 0.75485 0.85450 0.85444 0.86385 0.84419 0.90547 0.86065 0.86236 0.90826 0.88922 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.44 36.01 0.38 -0.21 16 2 C 0.08 1.02 7.20 -82.46 -0.59 0.43 16 3 C -0.28 -3.77 9.58 -39.78 -0.38 -4.15 16 4 C 0.31 3.82 7.68 -152.78 -1.17 2.64 16 5 N -0.65 -6.64 5.41 -12.67 -0.07 -6.71 16 6 C 0.56 7.07 7.70 -13.06 -0.10 6.97 16 7 O -0.52 -8.10 13.35 5.15 0.07 -8.03 16 8 C -0.29 -3.27 9.40 -37.52 -0.35 -3.62 16 9 C 0.05 0.69 9.45 -37.19 -0.35 0.33 16 10 C -0.20 -2.95 5.87 -105.02 -0.62 -3.57 16 11 C -0.03 -0.53 9.78 -39.14 -0.38 -0.91 16 12 C -0.23 -4.49 9.14 -39.46 -0.36 -4.85 16 13 C 0.18 3.65 6.66 -38.88 -0.26 3.40 16 14 O -0.20 -4.81 8.57 0.73 0.01 -4.81 16 15 C -0.39 -10.21 9.94 30.91 0.31 -9.90 16 16 H 0.11 2.94 5.41 -52.49 -0.28 2.66 16 17 C 0.07 1.74 5.49 -17.51 -0.10 1.64 16 18 N -0.86 -23.29 13.96 55.48 0.77 -22.52 16 19 Si 0.91 20.06 28.62 -169.99 -4.86 15.20 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 23 C -0.20 -3.50 9.97 -39.47 -0.39 -3.90 16 24 C -0.04 -0.62 9.40 -39.14 -0.37 -0.99 16 25 N -0.40 -4.37 4.04 -67.06 -0.27 -4.65 16 26 C 0.10 0.62 11.30 59.85 0.68 1.29 16 27 N -0.30 -3.81 12.56 33.64 0.42 -3.39 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.17 2.52 5.82 -52.48 -0.31 2.21 16 32 H 0.41 2.68 7.97 -40.82 -0.33 2.36 16 33 H 0.13 1.16 6.07 -52.48 -0.32 0.84 16 34 H 0.13 1.65 7.52 -52.48 -0.39 1.25 16 35 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 36 H 0.14 2.81 5.62 -52.49 -0.29 2.52 16 37 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 39 H 0.12 1.35 6.16 -52.49 -0.32 1.03 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.30 7.52 -51.93 -0.39 -0.09 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -31.33 364.08 -7.25 -38.58 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.73 Total: 6.23 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -4.07 Total: -15.40 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.86 Total: -37.26 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.86 Total: 15.20 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.33 -7.25 -38.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075568726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.732 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds