Wall clock time and date at job start Tue Mar 31 2020 15:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39722 * 125.77876 * 2 1 4 4 C 1.36158 * 107.85768 * 180.16585 * 3 2 1 5 5 N 1.39343 * 126.26541 * 179.84435 * 4 3 2 6 6 C 1.34779 * 119.99583 * 359.69551 * 5 4 3 7 7 O 1.21741 * 120.00283 * 359.97438 * 6 5 4 8 8 C 1.46210 * 119.99584 * 180.02562 * 6 5 4 9 9 C 1.35049 * 119.99772 * 179.97438 * 8 6 5 10 10 C 1.46955 * 119.99653 * 179.97438 * 9 8 6 11 11 C 1.40036 * 120.09540 * 180.02562 * 10 9 8 12 12 C 1.37594 * 119.89268 * 179.97438 * 11 10 9 13 13 C 1.39186 * 120.10275 * 0.24398 * 12 11 10 14 14 O 1.35570 * 119.89530 * 179.75160 * 13 12 11 15 15 C 1.34785 * 117.00358 * 354.44497 * 14 13 12 16 16 H 1.08000 * 119.99371 * 5.06072 * 15 14 13 17 17 C 1.38717 * 119.99804 * 185.06141 * 15 14 13 18 18 N 1.31506 * 119.99455 * 180.02562 * 17 15 14 19 19 Si 1.86792 * 120.00326 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47200 * 90.00278 * 19 17 15 21 21 H 1.48503 * 109.47241 * 210.00236 * 19 17 15 22 22 H 1.48501 * 109.47142 * 330.00015 * 19 17 15 23 23 C 1.39173 * 120.20282 * 359.50012 * 13 12 11 24 24 C 1.37602 * 120.10315 * 0.50463 * 23 13 12 25 25 N 1.35808 * 107.47091 * 359.58488 * 4 3 2 26 26 C 1.46501 * 126.09638 * 180.22352 * 25 4 3 27 27 N 1.30835 * 125.77468 * 179.70296 * 2 1 3 28 28 H 1.08997 * 109.47193 * 270.27703 * 1 2 3 29 29 H 1.09000 * 109.46977 * 30.27270 * 1 2 3 30 30 H 1.08997 * 109.47149 * 150.27592 * 1 2 3 31 31 H 1.08009 * 126.06962 * 0.02562 * 3 2 1 32 32 H 0.96995 * 120.00061 * 179.68942 * 5 4 3 33 33 H 1.08003 * 119.99907 * 359.97438 * 8 6 5 34 34 H 1.08003 * 120.00321 * 359.97438 * 9 8 6 35 35 H 1.07997 * 120.05151 * 359.95181 * 11 10 9 36 36 H 1.08001 * 119.95149 * 179.97438 * 12 11 10 37 37 H 0.97001 * 119.99729 * 179.97438 * 18 17 15 38 38 H 1.08004 * 119.95191 * 180.25599 * 23 13 12 39 39 H 1.08000 * 120.05434 * 179.77151 * 24 23 13 40 40 H 1.08997 * 109.47006 * 90.00487 * 26 25 4 41 41 H 1.09001 * 109.47414 * 210.00330 * 26 25 4 42 42 H 1.09000 * 109.47005 * 330.00334 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3240 1.1335 0.0000 4 6 3.6195 0.7146 -0.0038 5 7 4.7494 1.5299 -0.0081 6 6 4.6128 2.8708 -0.0150 7 8 3.5023 3.3695 -0.0180 8 6 5.7985 3.7263 -0.0201 9 6 5.6616 5.0698 -0.0276 10 6 6.8533 5.9297 -0.0322 11 6 6.7138 7.3231 -0.0394 12 6 7.8324 8.1242 -0.0432 13 6 9.1011 7.5518 -0.0449 14 8 10.2004 8.3451 -0.0536 15 6 9.9967 9.6718 -0.1766 16 1 8.9910 10.0655 -0.1803 17 6 11.0787 10.5312 -0.2984 18 7 10.8799 11.8257 -0.4178 19 14 12.8180 9.8501 -0.2912 20 1 13.2310 9.5327 -1.6818 21 1 13.7431 10.8608 0.2814 22 1 12.8627 8.6153 0.5325 23 6 9.2446 6.1675 -0.0323 24 6 8.1316 5.3583 -0.0287 25 7 3.6088 -0.6434 0.0034 26 6 4.7858 -1.5158 0.0071 27 7 2.2719 -1.0615 0.0055 28 1 -0.3633 0.0050 1.0276 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3633 -0.8924 -0.5095 31 1 1.9875 2.1599 0.0004 32 1 5.6343 1.1326 -0.0060 33 1 6.7837 3.2838 -0.0179 34 1 4.6764 5.5123 -0.0303 35 1 5.7298 7.7681 -0.0425 36 1 7.7259 9.1990 -0.0492 37 1 11.6365 12.4267 -0.5026 38 1 10.2310 5.7276 -0.0295 39 1 8.2439 4.2842 -0.0227 40 1 5.0783 -1.7268 1.0357 41 1 4.5475 -2.4498 -0.5017 42 1 5.6073 -1.0198 -0.5098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075568726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:41 Heat of formation + Delta-G solvation = 45.084277 kcal Electronic energy + Delta-G solvation = -25199.689218 eV Core-core repulsion = 21340.269493 eV Total energy + Delta-G solvation = -3859.419725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.52885 -40.99868 -40.57516 -38.62130 -36.24344 -34.81276 -34.52967 -34.23822 -32.00374 -30.93149 -30.26329 -29.40427 -27.46385 -26.42086 -25.10864 -23.81839 -22.89249 -21.57714 -21.28734 -20.46871 -19.59674 -19.15820 -18.51550 -18.09761 -16.95661 -16.78146 -16.57576 -16.17753 -15.81956 -15.75232 -15.64809 -15.54274 -15.18621 -14.64958 -14.39449 -14.34910 -14.26077 -14.06787 -14.04222 -13.42130 -13.27802 -13.21946 -13.17756 -13.12024 -12.73303 -12.64988 -12.36722 -11.94562 -11.94050 -11.63826 -11.30636 -11.17613 -11.02241 -10.69052 -9.90976 -9.78315 -9.21976 -8.74151 -8.53841 -6.25633 -0.38847 0.56337 0.66302 1.12412 1.16429 1.32934 1.37469 1.52292 1.75909 2.13295 2.25991 2.31577 2.79896 3.00367 3.15329 3.52321 3.55954 3.91654 4.04324 4.05993 4.21160 4.31262 4.35587 4.37524 4.45496 4.54437 4.61946 4.63094 4.82174 4.83672 4.84855 4.87857 4.99587 5.09365 5.16410 5.23580 5.28473 5.37746 5.57159 5.70235 5.76051 5.78497 5.83695 5.97422 6.14602 6.28293 6.73275 6.79318 7.00601 7.50412 8.56866 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.034721 B = 0.001783 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.224120 B =15700.085170 C =16479.891466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.075 3.925 3 C -0.309 4.309 4 C 0.307 3.693 5 N -0.632 5.632 6 C 0.559 3.441 7 O -0.551 6.551 8 C -0.239 4.239 9 C 0.028 3.972 10 C -0.164 4.164 11 C -0.042 4.042 12 C -0.246 4.246 13 C 0.137 3.863 14 O -0.233 6.233 15 C -0.404 4.404 16 H 0.084 0.916 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 0.971 3.029 20 H -0.265 1.265 21 H -0.269 1.269 22 H -0.259 1.259 23 C -0.196 4.196 24 C -0.036 4.036 25 N -0.393 5.393 26 C 0.088 3.912 27 N -0.320 5.320 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.157 0.843 32 H 0.430 0.570 33 H 0.166 0.834 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.112 0.888 37 H 0.286 0.714 38 H 0.139 0.861 39 H 0.171 0.829 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 -26.281 0.776 28.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 C -0.340 4.340 4 C 0.086 3.914 5 N -0.280 5.280 6 C 0.352 3.648 7 O -0.430 6.430 8 C -0.260 4.260 9 C 0.008 3.992 10 C -0.165 4.165 11 C -0.060 4.060 12 C -0.265 4.265 13 C 0.087 3.913 14 O -0.139 6.139 15 C -0.479 4.479 16 H 0.102 0.898 17 C -0.187 4.187 18 N -0.556 5.556 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.194 1.194 22 H -0.183 1.183 23 C -0.215 4.215 24 C -0.053 4.053 25 N -0.181 5.181 26 C -0.052 4.052 27 N -0.145 5.145 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.175 0.825 32 H 0.270 0.730 33 H 0.183 0.817 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.157 0.843 39 H 0.188 0.812 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.736 -27.081 0.777 29.141 hybrid contribution 1.016 1.465 -0.030 1.783 sum -9.720 -25.616 0.746 27.408 Atomic orbital electron populations 1.20289 0.84545 1.04129 1.03946 1.22711 0.98532 0.90047 0.97759 1.21611 0.90260 1.00991 1.21181 1.18202 0.89326 0.82941 1.00909 1.42635 1.07481 1.05373 1.72525 1.18678 0.90207 0.80932 0.74958 1.90768 1.28328 1.74332 1.49538 1.22496 0.97430 0.93195 1.12842 1.22224 0.96960 0.93104 0.86870 1.18773 0.93313 0.92440 1.11927 1.21313 0.97951 0.92974 0.93802 1.21233 0.92779 1.00694 1.11799 1.19990 0.86430 0.91794 0.93116 1.83460 1.30719 1.18428 1.81282 1.20757 0.96358 0.78647 1.52187 0.89806 1.25334 1.03726 0.94556 0.95132 1.69704 1.34400 1.03075 1.48423 0.85204 0.77187 0.78774 0.79514 1.18995 1.19392 1.18266 1.20515 1.01076 0.89045 1.10816 1.21394 0.89653 1.00665 0.93622 1.48881 1.06609 1.02152 1.60473 1.22233 0.82974 0.95117 1.04871 1.77298 0.86038 1.22261 1.28879 0.89401 0.89413 0.90124 0.82539 0.73029 0.81663 0.85505 0.84239 0.86992 0.90392 0.84298 0.81173 0.89289 0.88216 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.44 71.24 0.74 -0.34 16 2 C 0.08 1.73 7.20 43.07 0.31 2.04 16 3 C -0.31 -7.91 9.58 22.14 0.21 -7.70 16 4 C 0.31 6.60 7.68 131.20 1.01 7.61 16 5 N -0.63 -10.01 5.41 -312.18 -1.69 -11.70 16 6 C 0.56 11.65 7.70 86.31 0.66 12.32 16 7 O -0.55 -15.82 13.35 -4.48 -0.06 -15.88 16 8 C -0.24 -4.05 9.40 23.61 0.22 -3.83 16 9 C 0.03 0.61 9.45 23.82 0.23 0.84 16 10 C -0.16 -4.31 5.87 -20.12 -0.12 -4.43 16 11 C -0.04 -1.34 9.78 22.55 0.22 -1.12 16 12 C -0.25 -9.97 9.14 22.35 0.20 -9.76 16 13 C 0.14 5.85 6.66 22.72 0.15 6.00 16 14 O -0.23 -11.77 8.57 -20.30 -0.17 -11.95 16 15 C -0.40 -22.59 9.94 67.93 0.68 -21.91 16 16 H 0.08 4.93 5.41 -2.91 -0.02 4.91 16 17 C 0.01 0.67 5.49 84.86 0.47 1.14 16 18 N -0.92 -52.77 13.96 21.62 0.30 -52.47 16 19 Si 0.97 42.97 28.62 68.60 1.96 44.93 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 23 C -0.20 -6.36 9.97 22.34 0.22 -6.13 16 24 C -0.04 -0.88 9.40 22.55 0.21 -0.67 16 25 N -0.39 -7.46 4.04 -366.08 -1.48 -8.94 16 26 C 0.09 0.71 11.30 127.77 1.44 2.15 16 27 N -0.32 -7.59 12.56 -47.47 -0.60 -8.19 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.16 4.50 5.82 -2.91 -0.02 4.48 16 32 H 0.43 3.03 7.97 -92.71 -0.74 2.30 16 33 H 0.17 1.58 6.07 -2.91 -0.02 1.56 16 34 H 0.13 2.88 7.52 -2.91 -0.02 2.86 16 35 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 36 H 0.11 5.07 5.62 -2.91 -0.02 5.05 16 37 H 0.29 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.17 2.47 6.16 -2.91 -0.02 2.45 16 40 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.11 0.23 7.52 -2.39 -0.02 0.22 16 Total: -1.00 -74.81 364.08 5.47 -69.34 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.34 Total: 18.66 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 6.86 Total: -23.80 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -3.46 Total: -81.30 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.23 Total: -27.83 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.96 Total: 44.93 kcal Total: -74.81 5.47 -69.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075568726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.419 kcal (2) G-P(sol) polarization free energy of solvation -74.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds