Wall clock time and date at job start Tue Mar 31 2020 16:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46874 * 2 1 4 4 N 1.32162 * 120.53640 * 263.74493 * 3 2 1 5 5 C 1.31861 * 120.96846 * 180.02562 * 4 3 2 6 6 N 1.31883 * 122.09483 * 0.02562 * 5 4 3 7 7 C 1.32132 * 120.96359 * 359.97438 * 6 5 4 8 8 C 1.39923 * 120.53736 * 83.77181 * 3 2 1 9 9 C 1.47832 * 120.94212 * 359.97438 * 8 3 2 10 10 O 1.21552 * 119.99693 * 354.25145 * 9 8 3 11 11 N 1.34779 * 120.00227 * 174.24481 * 9 8 3 12 12 C 1.46498 * 119.99871 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46875 * 180.02562 * 12 11 9 14 14 C 1.38310 * 119.92588 * 269.72495 * 13 12 11 15 15 C 1.38103 * 120.06383 * 179.72400 * 14 13 12 16 16 C 1.38875 * 119.93570 * 0.57191 * 15 14 13 17 17 O 1.35752 * 120.07259 * 179.67837 * 16 15 14 18 18 C 1.34828 * 117.00070 * 185.63979 * 17 16 15 19 19 H 1.08002 * 119.99909 * 354.88053 * 18 17 16 20 20 C 1.38653 * 119.99928 * 174.88106 * 18 17 16 21 21 N 1.31561 * 119.99864 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99925 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46710 * 90.00419 * 22 20 18 24 24 H 1.48507 * 109.47090 * 209.99957 * 22 20 18 25 25 H 1.48491 * 109.47421 * 330.00262 * 22 20 18 26 26 C 1.38885 * 119.85970 * 359.70448 * 16 15 14 27 27 C 1.38101 * 119.92871 * 359.97438 * 26 16 15 28 28 H 1.08998 * 109.47470 * 59.99914 * 1 2 3 29 29 H 1.08997 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46968 * 299.99950 * 1 2 3 31 31 H 1.08998 * 109.46634 * 240.00716 * 2 1 3 32 32 H 1.08994 * 109.47014 * 119.99902 * 2 1 3 33 33 H 1.07997 * 118.94907 * 180.28592 * 5 4 3 34 34 H 1.08006 * 120.53432 * 180.02562 * 7 6 5 35 35 H 0.97006 * 119.99681 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47399 * 300.00137 * 12 11 9 37 37 H 1.08991 * 109.47058 * 60.00520 * 12 11 9 38 38 H 1.08004 * 119.96497 * 359.97438 * 14 13 12 39 39 H 1.08002 * 120.02904 * 180.27209 * 15 14 13 40 40 H 0.97000 * 119.99696 * 179.97438 * 21 20 18 41 41 H 1.07994 * 120.03433 * 179.97438 * 26 16 15 42 42 H 1.08003 * 119.96236 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3731 2.0126 -1.1315 5 6 2.8140 3.2553 -1.1414 6 7 2.9371 3.9639 -0.0359 7 6 2.6191 3.4508 1.1394 8 6 2.1460 2.1347 1.1980 9 6 1.7773 1.5164 2.4892 10 8 1.2712 0.4115 2.5114 11 7 2.0026 2.1777 3.6418 12 6 1.6377 1.5646 4.9214 13 6 1.9905 2.5029 6.0466 14 6 3.2387 2.4323 6.6382 15 6 3.5671 3.2946 7.6657 16 6 2.6384 4.2253 8.1129 17 8 2.9559 5.0698 9.1272 18 6 1.9724 5.8673 9.5903 19 1 1.0090 5.8756 9.1022 20 6 2.1977 6.6768 10.6932 21 7 1.2378 7.4546 11.1454 22 14 3.8637 6.6619 11.5379 23 1 4.7422 7.6862 10.9178 24 1 3.6899 6.9669 12.9808 25 1 4.4835 5.3211 11.3865 26 6 1.3838 4.2898 7.5206 27 6 1.0638 3.4292 6.4890 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.0789 3.7085 -2.0852 34 1 2.7223 4.0375 2.0403 35 1 2.4063 3.0596 3.6241 36 1 0.5661 1.3661 4.9367 37 1 2.1824 0.6286 5.0441 38 1 3.9587 1.7048 6.2935 39 1 4.5435 3.2419 8.1244 40 1 1.3954 8.0207 11.9172 41 1 0.6593 5.0121 7.8664 42 1 0.0882 3.4786 6.0283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075631101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:42 Heat of formation + Delta-G solvation = 9.143414 kcal Electronic energy + Delta-G solvation = -26043.337454 eV Core-core repulsion = 22182.359217 eV Total energy + Delta-G solvation = -3860.978237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.68418 -39.72667 -39.17832 -37.16131 -35.62560 -34.45425 -33.31920 -32.53203 -31.49794 -30.45441 -29.94997 -26.57485 -25.49667 -25.30806 -24.34765 -22.27544 -22.19867 -21.14098 -20.71433 -18.31351 -18.13529 -17.99081 -17.38623 -17.15965 -15.87564 -15.80554 -15.17898 -15.00121 -14.65419 -14.46604 -14.30276 -14.19813 -14.14759 -13.93031 -13.66256 -13.39094 -12.99476 -12.80618 -12.77569 -12.32368 -12.11970 -11.99552 -11.81620 -11.56565 -11.23853 -11.03961 -10.96755 -10.92027 -10.82105 -10.26538 -10.02456 -9.93788 -9.65883 -9.54220 -9.17059 -9.00152 -8.45481 -7.55620 -6.54643 -4.21881 0.07424 0.62956 1.84686 1.95627 2.57933 3.02605 3.15300 3.17382 3.31079 3.41810 3.61430 3.67290 3.95496 4.12533 4.28458 4.38780 4.54380 4.67526 4.84001 4.97676 4.97997 5.06626 5.13795 5.19934 5.24881 5.45524 5.47733 5.63546 5.72323 5.74888 5.82270 5.96030 5.96408 6.05629 6.17031 6.28430 6.38748 6.51677 6.60427 6.82132 7.04438 7.11379 7.28986 7.43282 7.61640 7.65047 7.88918 7.93697 8.79589 9.39476 10.52338 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022464 B = 0.002229 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.150404 B =12558.765586 C =13066.741170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C 0.237 3.763 4 N -0.525 5.525 5 C 0.316 3.684 6 N -0.526 5.526 7 C 0.186 3.814 8 C -0.243 4.243 9 C 0.563 3.437 10 O -0.526 6.526 11 N -0.714 5.714 12 C 0.179 3.821 13 C -0.211 4.211 14 C -0.055 4.055 15 C -0.195 4.195 16 C 0.168 3.832 17 O -0.211 6.211 18 C -0.392 4.392 19 H 0.108 0.892 20 C 0.065 3.935 21 N -0.874 5.874 22 Si 0.906 3.094 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.224 4.224 27 C -0.051 4.051 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.201 0.799 34 H 0.173 0.827 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.281 0.719 41 H 0.135 0.865 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.079 -10.803 -19.951 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.120 4.120 3 C 0.091 3.909 4 N -0.239 5.239 5 C 0.029 3.971 6 N -0.240 5.240 7 C 0.019 3.981 8 C -0.250 4.250 9 C 0.349 3.651 10 O -0.404 6.404 11 N -0.365 5.365 12 C 0.058 3.942 13 C -0.213 4.213 14 C -0.074 4.074 15 C -0.214 4.214 16 C 0.114 3.886 17 O -0.115 6.115 18 C -0.468 4.468 19 H 0.125 0.875 20 C -0.139 4.139 21 N -0.511 5.511 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.243 4.243 27 C -0.070 4.070 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.218 0.782 34 H 0.190 0.810 35 H 0.236 0.764 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.152 0.848 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.099 -10.954 -20.470 23.311 hybrid contribution 0.532 0.550 1.242 1.459 sum 2.630 -10.403 -19.227 22.019 Atomic orbital electron populations 1.21566 0.93066 1.02589 1.01827 1.20839 0.97508 0.88881 1.04820 1.22046 0.85817 0.96647 0.86436 1.68423 1.13677 1.12181 1.29591 1.25257 0.88263 0.86361 0.97220 1.68471 1.17940 1.38394 0.99151 1.23555 0.86850 0.90962 0.96722 1.21688 1.08838 0.97908 0.96605 1.17762 0.79001 0.85305 0.83048 1.90740 1.43452 1.19254 1.86963 1.46271 1.62987 1.21407 1.05859 1.20050 1.00392 0.94574 0.79219 1.19245 0.96362 1.03199 1.02458 1.20540 0.95147 0.97099 0.94613 1.20216 1.00082 0.98979 1.02156 1.19193 0.92640 0.88668 0.88071 1.83573 1.38791 1.45248 1.43912 1.20791 0.93585 1.18847 1.13534 0.87456 1.24499 0.99093 0.94812 0.95526 1.69643 1.32422 1.24280 1.24713 0.86168 0.82567 0.79851 0.78275 1.19766 1.20666 1.18294 1.21285 0.98242 1.04163 1.00649 1.20702 0.97769 0.93473 0.95045 0.93286 0.91576 0.91748 0.90233 0.87009 0.78217 0.81012 0.76434 0.91022 0.91043 0.86744 0.86331 0.90840 0.84755 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 9.51 37.16 0.35 -0.87 16 2 C -0.08 -0.80 5.49 -27.88 -0.15 -0.95 16 3 C 0.24 2.51 6.12 -81.82 -0.50 2.01 16 4 N -0.52 -5.39 10.36 -10.48 -0.11 -5.50 16 5 C 0.32 2.82 12.27 -92.02 -1.13 1.69 16 6 N -0.53 -5.22 10.42 -14.24 -0.15 -5.37 16 7 C 0.19 1.73 10.80 -16.77 -0.18 1.55 16 8 C -0.24 -2.50 5.91 -104.69 -0.62 -3.12 16 9 C 0.56 6.31 7.73 -12.33 -0.10 6.21 16 10 O -0.53 -6.91 12.02 5.32 0.06 -6.84 16 11 N -0.71 -7.40 5.50 -62.44 -0.34 -7.74 16 12 C 0.18 2.10 5.80 -5.20 -0.03 2.07 16 13 C -0.21 -2.95 5.25 -104.58 -0.55 -3.49 16 14 C -0.06 -0.81 9.69 -39.60 -0.38 -1.19 16 15 C -0.20 -3.46 9.99 -39.40 -0.39 -3.85 16 16 C 0.17 3.54 6.65 -39.11 -0.26 3.28 16 17 O -0.21 -5.24 8.59 0.05 0.00 -5.24 16 18 C -0.39 -10.50 9.95 30.89 0.31 -10.19 16 19 H 0.11 2.92 5.44 -52.49 -0.29 2.64 16 20 C 0.07 1.75 5.49 -17.51 -0.10 1.65 16 21 N -0.87 -24.31 13.96 55.48 0.77 -23.53 16 22 Si 0.91 20.75 28.62 -169.99 -4.86 15.89 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 26 C -0.22 -4.36 9.17 -39.39 -0.36 -4.72 16 27 C -0.05 -0.80 9.69 -39.61 -0.38 -1.19 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.70 6.88 -51.93 -0.36 0.34 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.11 1.18 5.94 -51.93 -0.31 0.87 16 33 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.17 1.19 6.58 -52.48 -0.35 0.85 16 35 H 0.40 3.59 6.63 -40.82 -0.27 3.32 16 36 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 38 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 39 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 40 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 42 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 LS Contribution 358.55 15.07 5.40 5.40 Total: -1.00 -29.78 358.55 -8.50 -38.28 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.80 Total: 5.77 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -4.48 Total: -11.12 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.17 Total: -42.14 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.06 Total: -12.08 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.86 Total: 15.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.78 -8.50 -38.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075631101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.421 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds