Wall clock time and date at job start Tue Mar 31 2020 15:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30526 * 119.70215 * 2 1 4 4 N 1.28265 * 122.99270 * 180.02562 * 3 2 1 5 5 C 1.46498 * 119.03020 * 179.97438 * 4 3 2 6 6 C 1.34681 * 121.94022 * 0.02562 * 4 3 2 7 7 O 1.21898 * 120.47306 * 179.97438 * 6 4 3 8 8 C 1.42358 * 119.05850 * 359.97438 * 6 4 3 9 9 C 1.47350 * 121.30515 * 179.72971 * 8 6 4 10 10 O 1.21620 * 120.00063 * 156.36836 * 9 8 6 11 11 N 1.34778 * 119.99699 * 336.37277 * 9 8 6 12 12 C 1.39105 * 119.99724 * 185.50072 * 11 9 8 13 13 C 1.39515 * 119.83684 * 323.93914 * 12 11 9 14 14 C 1.36360 * 120.16184 * 179.71330 * 13 12 11 15 15 C 1.40874 * 119.83238 * 0.57823 * 14 13 12 16 16 C 1.41132 * 120.16388 * 179.67398 * 15 14 13 17 17 H 1.07998 * 120.00106 * 207.41034 * 16 15 14 18 18 C 1.39913 * 119.99781 * 27.41021 * 16 15 14 19 19 N 1.30861 * 119.99917 * 10.81525 * 18 16 15 20 20 Si 1.86804 * 119.99977 * 190.81991 * 18 16 15 21 21 H 1.48495 * 109.47150 * 59.99773 * 20 18 16 22 22 H 1.48496 * 109.46904 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46754 * 299.99624 * 20 18 16 24 24 C 1.40887 * 119.67925 * 359.69808 * 15 14 13 25 25 C 1.36351 * 119.83146 * 359.97438 * 24 15 14 26 26 C 1.39351 * 117.39444 * 359.97438 * 8 6 4 27 27 C 1.50702 * 120.99575 * 179.97438 * 26 8 6 28 28 H 1.09002 * 109.47131 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47793 * 120.00021 * 1 2 3 30 30 H 1.09004 * 109.47020 * 240.00312 * 1 2 3 31 31 H 1.09004 * 109.47092 * 270.02039 * 5 4 3 32 32 H 1.08995 * 109.47487 * 30.02685 * 5 4 3 33 33 H 1.09006 * 109.46691 * 150.02555 * 5 4 3 34 34 H 0.96996 * 119.99882 * 5.50534 * 11 9 8 35 35 H 1.07995 * 119.92094 * 359.97438 * 13 12 11 36 36 H 1.08000 * 120.08038 * 180.25569 * 14 13 12 37 37 H 0.97002 * 120.00296 * 180.02562 * 19 18 16 38 38 H 1.07998 * 120.08559 * 179.97438 * 24 15 14 39 39 H 1.07996 * 119.92154 * 180.02562 * 25 24 15 40 40 H 1.08995 * 109.47045 * 83.36369 * 27 26 8 41 41 H 1.08999 * 109.47232 * 203.37147 * 27 26 8 42 42 H 1.09006 * 109.46519 * 323.36906 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1538 1.1338 0.0000 4 7 3.4343 1.2074 -0.0005 5 6 4.0705 2.5270 -0.0010 6 6 4.2112 0.1073 -0.0015 7 8 5.4260 0.2084 -0.0024 8 6 3.5936 -1.1754 -0.0016 9 6 4.3958 -2.4114 -0.0087 10 8 3.9196 -3.4478 0.4134 11 7 5.6573 -2.3932 -0.4828 12 6 6.3748 -3.5796 -0.5962 13 6 6.2144 -4.5820 0.3608 14 6 6.9100 -5.7499 0.2529 15 6 7.8013 -5.9380 -0.8216 16 6 8.5299 -7.1412 -0.9363 17 1 9.4857 -7.1479 -1.4392 18 6 8.0140 -8.3254 -0.3985 19 7 6.7749 -8.3685 0.0199 20 14 9.0941 -9.8447 -0.2778 21 1 10.2732 -9.5473 0.5746 22 1 8.3170 -10.9579 0.3239 23 1 9.5509 -10.2363 -1.6354 24 6 7.9623 -4.9188 -1.7810 25 6 7.2550 -3.7590 -1.6637 26 6 2.2007 -1.2163 0.0000 27 6 1.4629 -2.5304 -0.0005 28 1 -0.3633 1.0277 0.0005 29 1 -0.3635 -0.5138 -0.8899 30 1 -0.3633 -0.5138 0.8900 31 1 4.2276 2.8542 -1.0288 32 1 3.4271 3.2408 0.5133 33 1 5.0304 2.4677 0.5121 34 1 6.0649 -1.5530 -0.7448 35 1 5.5346 -4.4343 1.1869 36 1 6.7817 -6.5266 0.9923 37 1 6.4172 -9.1894 0.3931 38 1 8.6442 -5.0559 -2.6072 39 1 7.3770 -2.9771 -2.3985 40 1 1.3899 -2.9064 1.0200 41 1 0.4620 -2.3850 -0.4068 42 1 2.0036 -3.2503 -0.6151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076710833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:37 Heat of formation + Delta-G solvation = 18.182092 kcal Electronic energy + Delta-G solvation = -27112.103535 eV Core-core repulsion = 23251.517244 eV Total energy + Delta-G solvation = -3860.586291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.32030 -39.54829 -38.24931 -37.32371 -35.88363 -34.39133 -32.86111 -32.47094 -30.82761 -29.45141 -29.00886 -28.19416 -26.63819 -25.45319 -24.02708 -22.42976 -21.45596 -20.97334 -19.97390 -18.59292 -17.68422 -17.25474 -17.04319 -16.73992 -15.88589 -15.78974 -15.14427 -14.63410 -14.30317 -14.17258 -13.96538 -13.84573 -13.54088 -13.36418 -13.04337 -12.97087 -12.83633 -12.74611 -12.55705 -12.29691 -12.14307 -12.02009 -11.73029 -11.47729 -11.32957 -11.08401 -10.94422 -10.45932 -10.13449 -10.00858 -9.89530 -9.75432 -9.42050 -9.06596 -8.64651 -8.58917 -7.46150 -6.90189 -6.64572 -4.25931 0.03148 1.33445 1.93892 2.57461 2.90692 3.09993 3.12929 3.14760 3.21811 3.53416 3.62735 3.87549 3.97971 4.29819 4.47849 4.61665 4.72722 4.87665 4.91947 5.04984 5.18278 5.22336 5.26289 5.43671 5.45005 5.60145 5.61322 5.73407 5.77579 5.88694 6.23182 6.23306 6.46600 6.89540 7.06086 7.10695 7.23394 7.34541 7.37164 7.67316 7.75185 7.86162 8.03477 8.10942 8.27787 8.40133 8.69314 8.82741 8.94041 9.06648 10.27237 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.002785 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.641154 B =10051.538678 C =10945.081295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.059 3.941 3 N -0.215 5.215 4 N -0.345 5.345 5 C 0.081 3.919 6 C 0.493 3.507 7 O -0.524 6.524 8 C -0.215 4.215 9 C 0.557 3.443 10 O -0.522 6.522 11 N -0.630 5.630 12 C -0.004 4.004 13 C -0.087 4.087 14 C -0.152 4.152 15 C 0.105 3.895 16 C -0.458 4.458 17 H 0.076 0.924 18 C 0.071 3.929 19 N -0.796 5.796 20 Si 0.912 3.088 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.212 4.212 25 C -0.104 4.104 26 C 0.029 3.971 27 C -0.122 4.122 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.406 0.594 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.280 0.720 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.957 17.297 0.342 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 N -0.040 5.040 4 N -0.165 5.165 5 C -0.059 4.059 6 C 0.291 3.709 7 O -0.403 6.403 8 C -0.230 4.230 9 C 0.344 3.656 10 O -0.401 6.401 11 N -0.275 5.275 12 C -0.096 4.096 13 C -0.107 4.107 14 C -0.172 4.172 15 C 0.102 3.898 16 C -0.488 4.488 17 H 0.095 0.905 18 C -0.146 4.146 19 N -0.422 5.422 20 Si 0.737 3.263 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.232 4.232 25 C -0.124 4.124 26 C 0.022 3.978 27 C -0.178 4.178 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.245 0.755 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.784 17.445 0.715 21.640 hybrid contribution 0.913 -0.907 -0.161 1.297 sum -11.871 16.538 0.554 20.365 Atomic orbital electron populations 1.20580 0.85831 1.04348 1.03704 1.21725 0.98085 0.86680 1.04623 1.70628 0.95121 1.28922 1.09356 1.46525 1.02011 1.09922 1.58019 1.22174 0.99356 0.79890 1.04481 1.17936 0.88173 0.84892 0.79878 1.90858 1.12032 1.85605 1.51765 1.21707 0.94454 0.94089 1.12784 1.17258 0.81769 0.86309 0.80296 1.90791 1.71271 1.31406 1.46616 1.43086 1.12285 1.10235 1.61924 1.17258 1.03273 0.88692 1.00391 1.20596 0.99127 0.93824 0.97186 1.21103 1.00356 0.96228 0.99537 1.17690 0.90823 0.91808 0.89491 1.19514 1.05091 0.92255 1.31915 0.90541 1.25926 0.94841 1.00773 0.93035 1.69817 1.13241 1.28794 1.30327 0.86313 0.80571 0.79969 0.79495 1.18926 1.20363 1.19086 1.20580 1.05870 0.95863 1.00881 1.20073 0.99088 0.97567 0.95716 1.21579 0.92428 0.97438 0.86340 1.21084 0.99347 0.92368 1.05032 0.90038 0.89655 0.89635 0.90026 0.88715 0.88069 0.75511 0.87492 0.85731 0.90863 0.88588 0.89249 0.88422 0.90663 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.48 8.92 36.01 0.32 -0.16 16 2 C 0.06 0.58 6.87 -82.48 -0.57 0.02 16 3 N -0.21 -2.29 10.74 33.66 0.36 -1.93 16 4 N -0.34 -4.08 3.62 -69.81 -0.25 -4.33 16 5 C 0.08 0.64 10.58 59.85 0.63 1.28 16 6 C 0.49 7.50 7.46 -14.72 -0.11 7.39 16 7 O -0.52 -9.04 13.86 5.01 0.07 -8.97 16 8 C -0.22 -3.45 5.93 -104.19 -0.62 -4.07 16 9 C 0.56 11.19 7.16 -12.55 -0.09 11.10 16 10 O -0.52 -11.60 11.78 5.26 0.06 -11.54 16 11 N -0.63 -13.31 5.13 -10.73 -0.06 -13.36 16 12 C 0.00 -0.09 6.30 -83.61 -0.53 -0.61 16 13 C -0.09 -2.28 8.61 -39.78 -0.34 -2.62 16 14 C -0.15 -4.20 8.61 -39.26 -0.34 -4.54 16 15 C 0.10 2.88 5.57 -106.80 -0.59 2.29 16 16 C -0.46 -12.40 9.05 -37.86 -0.34 -12.75 16 17 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 18 C 0.07 1.83 5.26 -17.34 -0.09 1.74 16 19 N -0.80 -21.28 10.74 55.55 0.60 -20.68 16 20 Si 0.91 19.11 29.57 -169.99 -5.03 14.08 16 21 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 C -0.21 -5.36 9.74 -39.26 -0.38 -5.74 16 25 C -0.10 -2.47 9.90 -39.78 -0.39 -2.86 16 26 C 0.03 0.37 5.98 -103.54 -0.62 -0.25 16 27 C -0.12 -1.36 8.45 36.01 0.30 -1.05 16 28 H 0.08 0.38 8.11 -51.93 -0.42 -0.04 16 29 H 0.08 0.36 7.58 -51.93 -0.39 -0.03 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.52 8.13 -51.93 -0.42 0.10 16 33 H 0.10 0.84 7.36 -51.93 -0.38 0.46 16 34 H 0.41 8.00 6.26 -40.82 -0.26 7.74 16 35 H 0.11 2.78 6.24 -52.49 -0.33 2.45 16 36 H 0.12 3.54 6.10 -52.49 -0.32 3.22 16 37 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 38 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 39 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.07 0.55 6.57 -51.93 -0.34 0.21 16 42 H 0.10 1.37 6.61 -51.93 -0.34 1.03 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -32.95 350.82 -7.58 -40.53 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -4.87 Total: 11.74 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -3.76 Total: -10.84 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.65 Total: -40.30 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: 0.13 Total: -20.50 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.95 -7.58 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076710833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.716 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds