Wall clock time and date at job start Tue Mar 31 2020 15:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30526 * 119.70215 * 2 1 4 4 N 1.28265 * 122.99270 * 180.02562 * 3 2 1 5 5 C 1.46498 * 119.03020 * 179.97438 * 4 3 2 6 6 C 1.34681 * 121.94022 * 0.02562 * 4 3 2 7 7 O 1.21898 * 120.47306 * 179.97438 * 6 4 3 8 8 C 1.42358 * 119.05850 * 359.97438 * 6 4 3 9 9 C 1.47350 * 121.30515 * 179.72971 * 8 6 4 10 10 O 1.21620 * 120.00063 * 156.36836 * 9 8 6 11 11 N 1.34778 * 119.99699 * 336.37277 * 9 8 6 12 12 C 1.39105 * 119.99724 * 185.50072 * 11 9 8 13 13 C 1.39515 * 119.83684 * 323.93914 * 12 11 9 14 14 C 1.36360 * 120.16184 * 179.71330 * 13 12 11 15 15 C 1.40874 * 119.83238 * 0.57823 * 14 13 12 16 16 C 1.41132 * 120.16388 * 179.67398 * 15 14 13 17 17 H 1.07998 * 120.00106 * 207.41034 * 16 15 14 18 18 C 1.39913 * 119.99781 * 27.41021 * 16 15 14 19 19 N 1.30861 * 119.99917 * 10.81525 * 18 16 15 20 20 Si 1.86804 * 119.99977 * 190.81991 * 18 16 15 21 21 H 1.48495 * 109.47150 * 59.99773 * 20 18 16 22 22 H 1.48496 * 109.46904 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46754 * 299.99624 * 20 18 16 24 24 C 1.40887 * 119.67925 * 359.69808 * 15 14 13 25 25 C 1.36351 * 119.83146 * 359.97438 * 24 15 14 26 26 C 1.39351 * 117.39444 * 359.97438 * 8 6 4 27 27 C 1.50702 * 120.99575 * 179.97438 * 26 8 6 28 28 H 1.09002 * 109.47131 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47793 * 120.00021 * 1 2 3 30 30 H 1.09004 * 109.47020 * 240.00312 * 1 2 3 31 31 H 1.09004 * 109.47092 * 270.02039 * 5 4 3 32 32 H 1.08995 * 109.47487 * 30.02685 * 5 4 3 33 33 H 1.09006 * 109.46691 * 150.02555 * 5 4 3 34 34 H 0.96996 * 119.99882 * 5.50534 * 11 9 8 35 35 H 1.07995 * 119.92094 * 359.97438 * 13 12 11 36 36 H 1.08000 * 120.08038 * 180.25569 * 14 13 12 37 37 H 0.97002 * 120.00296 * 180.02562 * 19 18 16 38 38 H 1.07998 * 120.08559 * 179.97438 * 24 15 14 39 39 H 1.07996 * 119.92154 * 180.02562 * 25 24 15 40 40 H 1.08995 * 109.47045 * 83.36369 * 27 26 8 41 41 H 1.08999 * 109.47232 * 203.37147 * 27 26 8 42 42 H 1.09006 * 109.46519 * 323.36906 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1538 1.1338 0.0000 4 7 3.4343 1.2074 -0.0005 5 6 4.0705 2.5270 -0.0010 6 6 4.2112 0.1073 -0.0015 7 8 5.4260 0.2084 -0.0024 8 6 3.5936 -1.1754 -0.0016 9 6 4.3958 -2.4114 -0.0087 10 8 3.9196 -3.4478 0.4134 11 7 5.6573 -2.3932 -0.4828 12 6 6.3748 -3.5796 -0.5962 13 6 6.2144 -4.5820 0.3608 14 6 6.9100 -5.7499 0.2529 15 6 7.8013 -5.9380 -0.8216 16 6 8.5299 -7.1412 -0.9363 17 1 9.4857 -7.1479 -1.4392 18 6 8.0140 -8.3254 -0.3985 19 7 6.7749 -8.3685 0.0199 20 14 9.0941 -9.8447 -0.2778 21 1 10.2732 -9.5473 0.5746 22 1 8.3170 -10.9579 0.3239 23 1 9.5509 -10.2363 -1.6354 24 6 7.9623 -4.9188 -1.7810 25 6 7.2550 -3.7590 -1.6637 26 6 2.2007 -1.2163 0.0000 27 6 1.4629 -2.5304 -0.0005 28 1 -0.3633 1.0277 0.0005 29 1 -0.3635 -0.5138 -0.8899 30 1 -0.3633 -0.5138 0.8900 31 1 4.2276 2.8542 -1.0288 32 1 3.4271 3.2408 0.5133 33 1 5.0304 2.4677 0.5121 34 1 6.0649 -1.5530 -0.7448 35 1 5.5346 -4.4343 1.1869 36 1 6.7817 -6.5266 0.9923 37 1 6.4172 -9.1894 0.3931 38 1 8.6442 -5.0559 -2.6072 39 1 7.3770 -2.9771 -2.3985 40 1 1.3899 -2.9064 1.0200 41 1 0.4620 -2.3850 -0.4068 42 1 2.0036 -3.2503 -0.6151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076710833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:36 Heat of formation + Delta-G solvation = -3.058996 kcal Electronic energy + Delta-G solvation = -27113.024617 eV Core-core repulsion = 23251.517244 eV Total energy + Delta-G solvation = -3861.507373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.33315 -41.16477 -39.32950 -39.16298 -36.95511 -36.19423 -34.72029 -33.47170 -31.75994 -31.44057 -30.77092 -29.11682 -27.66486 -26.89910 -25.40191 -23.43885 -23.26521 -22.77382 -21.56682 -19.81678 -19.28431 -18.94128 -18.08876 -17.94391 -17.32987 -17.18144 -16.83343 -16.14551 -15.80265 -15.53237 -15.07701 -14.95277 -14.88212 -14.55355 -14.47850 -14.06884 -14.00495 -13.81418 -13.72697 -13.61045 -13.45698 -13.32514 -12.90521 -12.79667 -12.78446 -12.71881 -12.46035 -12.28611 -11.78214 -11.73174 -11.36253 -11.14798 -10.99040 -10.77246 -10.45370 -9.65532 -9.49686 -8.86525 -8.58156 -6.30655 -1.04310 0.34563 0.78456 1.05468 1.10237 1.38434 1.44551 1.51754 1.65192 2.15303 2.21554 2.34154 2.75632 2.81812 3.26529 3.45627 3.61873 3.70701 4.02820 4.29146 4.29724 4.34566 4.36811 4.44199 4.45794 4.65884 4.67744 4.74681 4.82602 4.92587 4.94235 5.02565 5.08063 5.13169 5.21578 5.29004 5.39515 5.42206 5.65621 5.82885 6.04522 6.08195 6.28905 6.29559 6.62047 6.66918 6.90681 6.91705 6.97482 7.26475 8.36227 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.002785 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.641154 B =10051.538678 C =10945.081295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.062 3.938 3 N -0.203 5.203 4 N -0.340 5.340 5 C 0.073 3.927 6 C 0.487 3.513 7 O -0.558 6.558 8 C -0.262 4.262 9 C 0.557 3.443 10 O -0.552 6.552 11 N -0.634 5.634 12 C 0.002 3.998 13 C -0.098 4.098 14 C -0.173 4.173 15 C 0.074 3.926 16 C -0.491 4.491 17 H 0.082 0.918 18 C 0.027 3.973 19 N -0.832 5.832 20 Si 0.990 3.010 21 H -0.260 1.260 22 H -0.269 1.269 23 H -0.257 1.257 24 C -0.218 4.218 25 C -0.103 4.103 26 C 0.059 3.941 27 C -0.123 4.123 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.413 0.587 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.287 0.713 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 18.972 -0.337 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 N -0.028 5.028 4 N -0.158 5.158 5 C -0.065 4.065 6 C 0.287 3.713 7 O -0.440 6.440 8 C -0.277 4.277 9 C 0.346 3.654 10 O -0.433 6.433 11 N -0.281 5.281 12 C -0.092 4.092 13 C -0.119 4.119 14 C -0.193 4.193 15 C 0.072 3.928 16 C -0.521 4.521 17 H 0.100 0.900 18 C -0.187 4.187 19 N -0.458 5.458 20 Si 0.810 3.190 21 H -0.184 1.184 22 H -0.194 1.194 23 H -0.181 1.181 24 C -0.238 4.238 25 C -0.123 4.123 26 C 0.051 3.949 27 C -0.179 4.179 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.142 0.858 33 H 0.112 0.888 34 H 0.254 0.746 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.117 0.883 41 H 0.142 0.858 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.806 19.189 0.029 24.237 hybrid contribution 1.277 -1.233 0.061 1.776 sum -13.529 17.956 0.091 22.483 Atomic orbital electron populations 1.20844 0.82030 1.06101 1.05563 1.22439 1.00106 0.85105 1.03073 1.70807 0.94274 1.29007 1.08736 1.46742 1.02277 1.10235 1.56586 1.22499 0.99565 0.78500 1.05944 1.17857 0.87977 0.85488 0.79983 1.90819 1.13217 1.86088 1.53842 1.21366 0.95532 0.92867 1.17925 1.17842 0.81454 0.87507 0.78609 1.90763 1.71785 1.33167 1.47553 1.43093 1.12908 1.09384 1.62744 1.17380 1.02975 0.89208 0.99617 1.20596 0.99177 0.94343 0.97738 1.21009 1.01874 0.96506 0.99941 1.18031 0.91526 0.93115 0.90154 1.19811 1.05661 0.93007 1.33599 0.89958 1.26886 0.96015 1.03887 0.91887 1.69906 1.15001 1.30059 1.30849 0.85136 0.78410 0.75562 0.79857 1.18388 1.19375 1.18082 1.20836 1.06246 0.95892 1.00859 1.20373 0.98067 0.97909 0.95965 1.21965 0.91177 0.99238 0.82554 1.21167 1.01195 0.90821 1.04703 0.88479 0.87572 0.87749 0.88399 0.85774 0.88778 0.74638 0.88349 0.87596 0.90246 0.86894 0.85901 0.88282 0.85845 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 8.92 71.24 0.64 0.10 16 2 C 0.06 1.01 6.87 43.19 0.30 1.31 16 3 N -0.20 -3.68 10.74 -47.43 -0.51 -4.19 16 4 N -0.34 -7.39 3.62 -492.97 -1.78 -9.18 16 5 C 0.07 1.01 10.58 127.77 1.35 2.36 16 6 C 0.49 14.70 7.46 85.28 0.64 15.34 16 7 O -0.56 -19.57 13.86 -4.99 -0.07 -19.64 16 8 C -0.26 -8.43 5.93 -19.59 -0.12 -8.54 16 9 C 0.56 23.17 7.16 86.64 0.62 23.79 16 10 O -0.55 -25.70 11.78 -4.09 -0.05 -25.75 16 11 N -0.63 -27.66 5.13 -306.12 -1.57 -29.23 16 12 C 0.00 0.08 6.30 38.61 0.24 0.32 16 13 C -0.10 -5.43 8.61 22.14 0.19 -5.23 16 14 C -0.17 -10.12 8.61 22.48 0.19 -9.93 16 15 C 0.07 4.26 5.57 -21.28 -0.12 4.14 16 16 C -0.49 -27.44 9.05 23.39 0.21 -27.23 16 17 H 0.08 4.33 7.87 -2.91 -0.02 4.30 16 18 C 0.03 1.42 5.26 85.24 0.45 1.87 16 19 N -0.83 -46.15 10.74 21.82 0.23 -45.91 16 20 Si 0.99 39.59 29.57 68.60 2.03 41.62 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 22 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 23 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 24 C -0.22 -11.25 9.74 22.48 0.22 -11.03 16 25 C -0.10 -4.92 9.90 22.14 0.22 -4.71 16 26 C 0.06 1.37 5.98 -19.16 -0.11 1.26 16 27 C -0.12 -2.53 8.45 71.24 0.60 -1.93 16 28 H 0.10 0.39 8.11 -2.39 -0.02 0.37 16 29 H 0.11 0.31 7.58 -2.39 -0.02 0.29 16 30 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.12 0.96 8.13 -2.39 -0.02 0.94 16 33 H 0.09 1.48 7.36 -2.38 -0.02 1.46 16 34 H 0.41 16.70 6.26 -92.71 -0.58 16.12 16 35 H 0.10 5.48 6.24 -2.91 -0.02 5.46 16 36 H 0.11 6.46 6.10 -2.91 -0.02 6.45 16 37 H 0.29 14.46 8.30 -92.71 -0.77 13.69 16 38 H 0.11 5.30 8.06 -2.91 -0.02 5.28 16 39 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 40 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.12 1.31 6.57 -2.39 -0.02 1.30 16 42 H 0.06 1.82 6.61 -2.38 -0.02 1.81 16 Total: -1.00 -76.87 350.82 4.30 -72.57 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: 0.50 Total: 37.83 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 5.52 Total: -18.11 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -3.63 Total: -88.51 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -0.12 Total: -45.39 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -76.87 4.30 -72.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076710833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.508 kcal (2) G-P(sol) polarization free energy of solvation -76.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds