Wall clock time and date at job start Tue Mar 31 2020 14:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30841 * 125.89857 * 2 1 4 4 N 1.40084 * 108.20817 * 179.97438 * 3 2 1 5 5 H 0.97001 * 126.03564 * 180.02562 * 4 3 2 6 6 C 1.34951 * 107.92615 * 359.75389 * 4 3 2 7 7 C 1.35325 * 107.74246 * 0.39535 * 6 4 3 8 8 C 1.50704 * 126.03746 * 179.87216 * 7 6 4 9 9 N 1.46500 * 109.46971 * 259.68686 * 8 7 6 10 10 C 1.34770 * 120.00149 * 180.02562 * 9 8 7 11 11 O 1.21722 * 119.99697 * 0.02562 * 10 9 8 12 12 C 1.46250 * 120.00046 * 179.97438 * 10 9 8 13 13 C 1.35031 * 119.99722 * 180.02562 * 12 10 9 14 14 C 1.46959 * 119.99896 * 180.27394 * 13 12 10 15 15 C 1.40027 * 120.10017 * 359.45143 * 14 13 12 16 16 C 1.37601 * 119.89863 * 179.78912 * 15 14 13 17 17 C 1.39178 * 120.09610 * 0.48118 * 16 15 14 18 18 O 1.35575 * 119.89259 * 179.76441 * 17 16 15 19 19 C 1.34788 * 116.99533 * 174.42515 * 18 17 16 20 20 H 1.08001 * 120.00124 * 5.05799 * 19 18 17 21 21 C 1.38720 * 119.99795 * 185.06035 * 19 18 17 22 22 N 1.31507 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47157 * 89.99783 * 23 21 19 25 25 H 1.48507 * 109.47385 * 209.99705 * 23 21 19 26 26 H 1.48501 * 109.47369 * 329.99939 * 23 21 19 27 27 C 1.39170 * 120.20621 * 359.74800 * 17 16 15 28 28 C 1.37600 * 120.10262 * 0.02562 * 27 17 16 29 29 H 1.08996 * 109.47096 * 270.02182 * 1 2 3 30 30 H 1.08997 * 109.47187 * 30.02159 * 1 2 3 31 31 H 1.09005 * 109.46952 * 150.02831 * 1 2 3 32 32 H 1.07995 * 126.13258 * 180.23885 * 6 4 3 33 33 H 1.08993 * 109.46876 * 139.68954 * 8 7 6 34 34 H 1.08995 * 109.46957 * 19.68876 * 8 7 6 35 35 H 0.96999 * 119.99522 * 359.97438 * 9 8 7 36 36 H 1.07990 * 120.00180 * 359.97438 * 12 10 9 37 37 H 1.08000 * 120.00105 * 359.97438 * 13 12 10 38 38 H 1.08005 * 120.04947 * 359.97438 * 15 14 13 39 39 H 1.07995 * 119.95289 * 180.22906 * 16 15 14 40 40 H 0.97004 * 119.99419 * 180.02562 * 22 21 19 41 41 H 1.07998 * 119.95118 * 179.97438 * 27 17 16 42 42 H 1.07997 * 120.05056 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 1 4.3908 1.2081 0.0011 6 6 3.6143 -0.7153 0.0065 7 6 2.3271 -1.1330 0.0006 8 6 1.8600 -2.5658 0.0013 9 7 1.4807 -2.9564 -1.3588 10 6 1.0288 -4.2028 -1.6007 11 8 0.9354 -5.0039 -0.6890 12 6 0.6496 -4.5926 -2.9583 13 6 0.1964 -5.8413 -3.2005 14 6 -0.1789 -6.2348 -4.5658 15 6 -0.0782 -5.3130 -5.6151 16 6 -0.4267 -5.6872 -6.8926 17 6 -0.8880 -6.9766 -7.1408 18 8 -1.2347 -7.3394 -8.4002 19 6 -1.5631 -8.6320 -8.5961 20 1 -1.6218 -9.3076 -7.7555 21 6 -1.8257 -9.0944 -9.8773 22 7 -1.7547 -8.2715 -10.9007 23 14 -2.2801 -10.8857 -10.1489 24 1 -3.7542 -11.0416 -10.0585 25 1 -1.8185 -11.3152 -11.4935 26 1 -1.6290 -11.7245 -9.1107 27 6 -0.9943 -7.8947 -6.1002 28 6 -0.6437 -7.5308 -4.8204 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8903 -0.5134 32 1 4.4891 -1.3485 0.0120 33 1 0.9989 -2.6668 0.6618 34 1 2.6654 -3.2104 0.3532 35 1 1.5541 -2.3176 -2.0850 36 1 0.7313 -3.8815 -3.7669 37 1 0.1143 -6.5523 -2.3918 38 1 0.2752 -4.3108 -5.4225 39 1 -0.3459 -4.9781 -7.7031 40 1 -1.9386 -8.5948 -11.7966 41 1 -1.3532 -8.8940 -6.2974 42 1 -0.7261 -8.2440 -4.0136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076855134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:39 Heat of formation + Delta-G solvation = 44.921571 kcal Electronic energy + Delta-G solvation = -24960.852209 eV Core-core repulsion = 21101.425429 eV Total energy + Delta-G solvation = -3859.426780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.70872 -39.47301 -39.07254 -36.88989 -35.10555 -33.19941 -33.14509 -32.29144 -31.03707 -30.41435 -28.42723 -28.19601 -26.17074 -25.50964 -23.00811 -22.12520 -21.46675 -20.70081 -20.00007 -19.31875 -18.38245 -17.97821 -17.11194 -16.93144 -15.92545 -15.24405 -15.11259 -14.91800 -14.74089 -14.53056 -14.38028 -13.90684 -13.80386 -13.47378 -13.32023 -13.14792 -13.09646 -12.98806 -12.60404 -12.56567 -12.35784 -11.91860 -11.74553 -11.70013 -11.12159 -11.06201 -10.95483 -10.67127 -10.53247 -9.88935 -9.79019 -9.58761 -9.48271 -9.09704 -8.97652 -8.82947 -8.36961 -7.09803 -6.64307 -4.19236 1.10267 1.42318 2.14660 2.16374 2.43844 2.58653 3.04434 3.05418 3.10168 3.51969 3.62659 3.82994 4.24111 4.36270 4.52419 4.78649 4.89065 4.93463 5.03127 5.06053 5.13678 5.29892 5.30775 5.49627 5.53359 5.56437 5.59590 5.68613 5.70323 5.74610 6.02664 6.13718 6.21502 6.39957 6.49030 6.52882 6.63378 6.80732 6.81535 6.93257 7.14458 7.24024 7.25115 7.29747 7.62506 7.65291 7.81109 8.39650 8.80571 9.47722 10.52366 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.029277 B = 0.001702 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.159391 B =16444.030762 C =16925.141113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.094 3.906 3 N -0.296 5.296 4 N -0.477 5.477 5 H 0.441 0.559 6 C 0.082 3.918 7 C -0.258 4.258 8 C 0.202 3.798 9 N -0.729 5.729 10 C 0.555 3.445 11 O -0.561 6.561 12 C -0.281 4.281 13 C 0.037 3.963 14 C -0.198 4.198 15 C -0.043 4.043 16 C -0.200 4.200 17 C 0.167 3.833 18 O -0.163 6.163 19 C -0.393 4.393 20 H 0.097 0.903 21 C 0.041 3.959 22 N -0.852 5.852 23 Si 0.945 3.055 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.265 1.265 27 C -0.242 4.242 28 C -0.035 4.035 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.179 0.821 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.400 0.600 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.274 0.726 41 H 0.131 0.869 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.488 13.289 18.531 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.073 4.073 3 N -0.120 5.120 4 N -0.184 5.184 5 H 0.285 0.715 6 C -0.067 4.067 7 C -0.270 4.270 8 C 0.077 3.923 9 N -0.381 5.381 10 C 0.347 3.653 11 O -0.441 6.441 12 C -0.303 4.303 13 C 0.017 3.983 14 C -0.199 4.199 15 C -0.061 4.061 16 C -0.219 4.219 17 C 0.110 3.890 18 O -0.064 6.064 19 C -0.469 4.469 20 H 0.115 0.885 21 C -0.165 4.165 22 N -0.485 5.485 23 Si 0.769 3.231 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.190 1.190 27 C -0.261 4.261 28 C -0.054 4.054 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.196 0.804 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.234 0.766 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.084 0.916 41 H 0.149 0.851 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.403 14.106 18.675 24.866 hybrid contribution 0.418 -1.076 -0.529 1.270 sum 8.821 13.030 18.146 24.018 Atomic orbital electron populations 1.20260 0.86377 1.03810 1.03344 1.22353 0.97184 0.89989 0.97816 1.77351 0.86624 1.22472 1.25544 1.46256 1.07490 1.05481 1.59129 0.71495 1.22513 0.99357 0.85365 0.99451 1.20044 0.92092 0.96026 1.18797 1.19318 0.99932 0.88760 0.84245 1.46002 1.67918 1.13836 1.10362 1.18406 0.76309 0.81176 0.89427 1.90776 1.55386 1.51279 1.46703 1.22450 1.13398 0.99216 0.95190 1.22281 0.86528 0.94687 0.94819 1.18471 1.13476 0.95477 0.92463 1.20885 0.95998 0.97816 0.91442 1.20153 1.09180 0.95395 0.97175 1.19613 0.90623 0.93102 0.85636 1.83907 1.70624 1.29124 1.22750 1.21474 1.47818 0.82942 0.94626 0.88541 1.25392 0.96410 1.00569 0.94116 1.70016 1.43433 1.35518 0.99550 0.85649 0.79115 0.79852 0.78516 1.19642 1.20066 1.18951 1.21100 1.10884 1.01431 0.92731 1.20991 0.94079 0.94405 0.95904 0.90232 0.90645 0.89953 0.80352 0.90900 0.91182 0.76625 0.85985 0.85927 0.86416 0.86164 0.91622 0.85138 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.26 36.00 0.37 -0.19 16 2 C 0.09 0.83 7.22 -82.41 -0.59 0.24 16 3 N -0.30 -2.83 12.70 33.67 0.43 -2.41 16 4 N -0.48 -3.09 7.36 30.45 0.22 -2.86 16 5 H 0.44 1.45 8.96 -182.61 -1.64 -0.19 16 6 C 0.08 0.50 11.90 -17.22 -0.20 0.30 16 7 C -0.26 -2.06 5.47 -105.05 -0.57 -2.63 16 8 C 0.20 1.81 5.78 -5.19 -0.03 1.78 16 9 N -0.73 -7.27 5.54 -62.94 -0.35 -7.62 16 10 C 0.55 7.48 7.74 -13.04 -0.10 7.38 16 11 O -0.56 -9.49 16.23 5.17 0.08 -9.40 16 12 C -0.28 -3.75 9.41 -37.50 -0.35 -4.11 16 13 C 0.04 0.55 9.45 -37.19 -0.35 0.20 16 14 C -0.20 -3.34 5.87 -105.03 -0.62 -3.96 16 15 C -0.04 -0.73 9.40 -39.14 -0.37 -1.10 16 16 C -0.20 -3.98 9.97 -39.47 -0.39 -4.38 16 17 C 0.17 3.82 6.66 -38.89 -0.26 3.56 16 18 O -0.16 -4.42 9.74 0.70 0.01 -4.41 16 19 C -0.39 -10.43 9.48 30.91 0.29 -10.14 16 20 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.85 -23.84 13.67 55.48 0.76 -23.08 16 23 Si 0.94 19.50 29.55 -169.99 -5.02 14.48 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 25 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 27 C -0.24 -5.00 9.14 -39.47 -0.36 -5.36 16 28 C -0.04 -0.63 9.78 -39.15 -0.38 -1.01 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.57 7.96 -51.93 -0.41 0.16 16 32 H 0.18 0.54 8.06 -52.49 -0.42 0.11 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.40 3.33 8.44 -40.82 -0.34 2.98 16 36 H 0.12 1.41 6.06 -52.49 -0.32 1.09 16 37 H 0.12 1.83 7.52 -52.49 -0.39 1.43 16 38 H 0.12 1.62 6.16 -52.48 -0.32 1.30 16 39 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.13 2.66 5.62 -52.49 -0.29 2.37 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -33.08 370.10 -8.41 -41.49 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.09 Total: 6.66 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -4.02 Total: -18.42 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 1.06 Total: -35.97 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.08 -8.41 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076855134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.410 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds