Wall clock time and date at job start Tue Mar 31 2020 14:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30841 * 125.89857 * 2 1 4 4 N 1.40084 * 108.20817 * 179.97438 * 3 2 1 5 5 H 0.97001 * 126.03564 * 180.02562 * 4 3 2 6 6 C 1.34951 * 107.92615 * 359.75389 * 4 3 2 7 7 C 1.35325 * 107.74246 * 0.39535 * 6 4 3 8 8 C 1.50704 * 126.03746 * 179.87216 * 7 6 4 9 9 N 1.46500 * 109.46971 * 259.68686 * 8 7 6 10 10 C 1.34770 * 120.00149 * 180.02562 * 9 8 7 11 11 O 1.21722 * 119.99697 * 0.02562 * 10 9 8 12 12 C 1.46250 * 120.00046 * 179.97438 * 10 9 8 13 13 C 1.35031 * 119.99722 * 180.02562 * 12 10 9 14 14 C 1.46959 * 119.99896 * 180.27394 * 13 12 10 15 15 C 1.40027 * 120.10017 * 359.45143 * 14 13 12 16 16 C 1.37601 * 119.89863 * 179.78912 * 15 14 13 17 17 C 1.39178 * 120.09610 * 0.48118 * 16 15 14 18 18 O 1.35575 * 119.89259 * 179.76441 * 17 16 15 19 19 C 1.34788 * 116.99533 * 174.42515 * 18 17 16 20 20 H 1.08001 * 120.00124 * 5.05799 * 19 18 17 21 21 C 1.38720 * 119.99795 * 185.06035 * 19 18 17 22 22 N 1.31507 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47157 * 89.99783 * 23 21 19 25 25 H 1.48507 * 109.47385 * 209.99705 * 23 21 19 26 26 H 1.48501 * 109.47369 * 329.99939 * 23 21 19 27 27 C 1.39170 * 120.20621 * 359.74800 * 17 16 15 28 28 C 1.37600 * 120.10262 * 0.02562 * 27 17 16 29 29 H 1.08996 * 109.47096 * 270.02182 * 1 2 3 30 30 H 1.08997 * 109.47187 * 30.02159 * 1 2 3 31 31 H 1.09005 * 109.46952 * 150.02831 * 1 2 3 32 32 H 1.07995 * 126.13258 * 180.23885 * 6 4 3 33 33 H 1.08993 * 109.46876 * 139.68954 * 8 7 6 34 34 H 1.08995 * 109.46957 * 19.68876 * 8 7 6 35 35 H 0.96999 * 119.99522 * 359.97438 * 9 8 7 36 36 H 1.07990 * 120.00180 * 359.97438 * 12 10 9 37 37 H 1.08000 * 120.00105 * 359.97438 * 13 12 10 38 38 H 1.08005 * 120.04947 * 359.97438 * 15 14 13 39 39 H 1.07995 * 119.95289 * 180.22906 * 16 15 14 40 40 H 0.97004 * 119.99419 * 180.02562 * 22 21 19 41 41 H 1.07998 * 119.95118 * 179.97438 * 27 17 16 42 42 H 1.07997 * 120.05056 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 1 4.3908 1.2081 0.0011 6 6 3.6143 -0.7153 0.0065 7 6 2.3271 -1.1330 0.0006 8 6 1.8600 -2.5658 0.0013 9 7 1.4807 -2.9564 -1.3588 10 6 1.0288 -4.2028 -1.6007 11 8 0.9354 -5.0039 -0.6890 12 6 0.6496 -4.5926 -2.9583 13 6 0.1964 -5.8413 -3.2005 14 6 -0.1789 -6.2348 -4.5658 15 6 -0.0782 -5.3130 -5.6151 16 6 -0.4267 -5.6872 -6.8926 17 6 -0.8880 -6.9766 -7.1408 18 8 -1.2347 -7.3394 -8.4002 19 6 -1.5631 -8.6320 -8.5961 20 1 -1.6218 -9.3076 -7.7555 21 6 -1.8257 -9.0944 -9.8773 22 7 -1.7547 -8.2715 -10.9007 23 14 -2.2801 -10.8857 -10.1489 24 1 -3.7542 -11.0416 -10.0585 25 1 -1.8185 -11.3152 -11.4935 26 1 -1.6290 -11.7245 -9.1107 27 6 -0.9943 -7.8947 -6.1002 28 6 -0.6437 -7.5308 -4.8204 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8903 -0.5134 32 1 4.4891 -1.3485 0.0120 33 1 0.9989 -2.6668 0.6618 34 1 2.6654 -3.2104 0.3532 35 1 1.5541 -2.3176 -2.0850 36 1 0.7313 -3.8815 -3.7669 37 1 0.1143 -6.5523 -2.3918 38 1 0.2752 -4.3108 -5.4225 39 1 -0.3459 -4.9781 -7.7031 40 1 -1.9386 -8.5948 -11.7966 41 1 -1.3532 -8.8940 -6.2974 42 1 -0.7261 -8.2440 -4.0136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076855134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:39 Heat of formation + Delta-G solvation = 22.404594 kcal Electronic energy + Delta-G solvation = -24961.828618 eV Core-core repulsion = 21101.425429 eV Total energy + Delta-G solvation = -3860.403189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.27559 -40.86399 -40.40321 -38.47203 -36.00335 -34.69786 -33.97526 -33.74385 -31.95508 -31.77073 -29.70278 -28.84798 -27.57332 -26.76672 -24.31139 -23.62180 -22.07328 -21.96960 -20.78320 -20.41364 -19.73642 -18.93187 -18.69458 -18.06674 -16.89493 -16.43518 -16.30397 -16.09163 -15.98349 -15.67681 -15.59070 -15.23429 -15.17409 -14.63935 -14.51576 -14.18019 -14.08823 -13.74134 -13.66484 -13.58015 -13.33561 -13.21054 -13.10316 -12.93063 -12.69055 -12.53261 -12.18229 -12.11801 -11.56292 -11.19392 -11.08253 -11.00558 -10.54797 -10.36724 -9.97188 -9.86693 -9.59843 -8.64429 -8.50828 -6.16932 -0.19275 0.60884 0.90226 1.18449 1.36709 1.47144 1.52680 1.53858 1.99815 2.16456 2.45109 2.62719 2.88716 3.20430 3.44768 3.67348 3.89040 3.89984 3.98528 4.11316 4.19020 4.35889 4.40588 4.42342 4.50057 4.52848 4.68806 4.78711 4.84240 4.97514 4.99359 5.05294 5.05894 5.11275 5.22315 5.33311 5.37458 5.55048 5.62643 5.64705 5.66697 5.85706 5.99016 6.13406 6.41845 6.68609 6.71184 6.93617 7.37488 7.71219 8.71249 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.029277 B = 0.001702 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.159391 B =16444.030762 C =16925.141113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.084 3.916 3 N -0.333 5.333 4 N -0.469 5.469 5 H 0.454 0.546 6 C 0.100 3.900 7 C -0.276 4.276 8 C 0.207 3.793 9 N -0.710 5.710 10 C 0.551 3.449 11 O -0.594 6.594 12 C -0.243 4.243 13 C 0.013 3.987 14 C -0.168 4.168 15 C -0.038 4.038 16 C -0.208 4.208 17 C 0.128 3.872 18 O -0.221 6.221 19 C -0.416 4.416 20 H 0.106 0.894 21 C -0.019 4.019 22 N -0.914 5.914 23 Si 1.018 2.982 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.252 1.252 27 C -0.249 4.249 28 C -0.041 4.041 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.214 0.786 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.411 0.589 36 H 0.149 0.851 37 H 0.126 0.874 38 H 0.160 0.840 39 H 0.122 0.878 40 H 0.275 0.725 41 H 0.124 0.876 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.130 14.314 21.618 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 N -0.157 5.157 4 N -0.177 5.177 5 H 0.301 0.699 6 C -0.051 4.051 7 C -0.288 4.288 8 C 0.083 3.917 9 N -0.360 5.360 10 C 0.342 3.658 11 O -0.478 6.478 12 C -0.264 4.264 13 C -0.007 4.007 14 C -0.169 4.169 15 C -0.056 4.056 16 C -0.227 4.227 17 C 0.077 3.923 18 O -0.126 6.126 19 C -0.492 4.492 20 H 0.123 0.877 21 C -0.218 4.218 22 N -0.551 5.551 23 Si 0.838 3.162 24 H -0.188 1.188 25 H -0.196 1.196 26 H -0.176 1.176 27 C -0.268 4.268 28 C -0.059 4.059 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.230 0.770 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.247 0.753 36 H 0.166 0.834 37 H 0.144 0.856 38 H 0.177 0.823 39 H 0.140 0.860 40 H 0.084 0.916 41 H 0.142 0.858 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.079 15.208 21.832 28.452 hybrid contribution 0.157 -0.991 -0.911 1.355 sum 10.236 14.217 20.921 27.287 Atomic orbital electron populations 1.20286 0.85828 1.03838 1.03785 1.22618 0.97856 0.90234 0.97596 1.77305 0.87996 1.23388 1.27031 1.46309 1.07160 1.06027 1.58213 0.69938 1.23022 0.99848 0.85339 0.96854 1.19968 0.92818 0.95120 1.20852 1.19286 0.99739 0.89508 0.83208 1.45930 1.65916 1.12777 1.11426 1.18456 0.76459 0.81875 0.89001 1.90781 1.56834 1.52528 1.47627 1.22788 1.09003 0.98705 0.95879 1.22162 0.89071 0.95859 0.93614 1.18801 1.09881 0.94777 0.93461 1.21286 0.94763 0.99655 0.89898 1.20424 1.09027 0.94440 0.98794 1.20189 0.92035 0.94839 0.85284 1.83888 1.74362 1.29506 1.24845 1.21898 1.48434 0.83517 0.95359 0.87707 1.26609 0.96279 1.05357 0.93546 1.70152 1.47026 1.37906 1.00036 0.84585 0.79068 0.73957 0.78638 1.18780 1.19601 1.17589 1.21203 1.11088 1.00968 0.93562 1.21325 0.93484 0.95695 0.95397 0.89630 0.90550 0.89900 0.76986 0.91684 0.90844 0.75275 0.83389 0.85634 0.82306 0.86043 0.91636 0.85802 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.26 71.23 0.73 -0.25 16 2 C 0.08 1.31 7.22 43.10 0.31 1.62 16 3 N -0.33 -5.71 12.70 -47.38 -0.60 -6.32 16 4 N -0.47 -4.74 7.36 -57.59 -0.42 -5.17 16 5 H 0.45 1.72 8.96 -213.33 -1.91 -0.19 16 6 C 0.10 0.85 11.90 83.54 0.99 1.85 16 7 C -0.28 -3.57 5.47 -20.14 -0.11 -3.68 16 8 C 0.21 3.08 5.78 85.63 0.50 3.57 16 9 N -0.71 -11.38 5.54 -471.26 -2.61 -13.99 16 10 C 0.55 12.70 7.74 86.33 0.67 13.36 16 11 O -0.59 -18.33 16.23 -4.42 -0.07 -18.40 16 12 C -0.24 -5.31 9.41 23.62 0.22 -5.09 16 13 C 0.01 0.33 9.45 23.82 0.23 0.56 16 14 C -0.17 -5.16 5.87 -20.13 -0.12 -5.27 16 15 C -0.04 -1.19 9.40 22.55 0.21 -0.97 16 16 C -0.21 -8.26 9.97 22.34 0.22 -8.04 16 17 C 0.13 6.12 6.66 22.72 0.15 6.27 16 18 O -0.22 -12.80 9.74 -20.39 -0.20 -13.00 16 19 C -0.42 -23.44 9.48 67.94 0.64 -22.79 16 20 H 0.11 5.39 5.18 -2.91 -0.02 5.37 16 21 C -0.02 -1.06 5.49 84.86 0.47 -0.60 16 22 N -0.91 -54.49 13.67 21.62 0.30 -54.19 16 23 Si 1.02 41.51 29.55 68.60 2.03 43.54 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 25 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 26 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 27 C -0.25 -10.41 9.14 22.34 0.20 -10.21 16 28 C -0.04 -1.38 9.78 22.55 0.22 -1.16 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.98 7.96 -2.38 -0.02 0.96 16 32 H 0.21 0.24 8.06 -2.91 -0.02 0.22 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.41 4.99 8.44 -92.71 -0.78 4.21 16 36 H 0.15 2.48 6.06 -2.92 -0.02 2.46 16 37 H 0.13 3.30 7.52 -2.91 -0.02 3.28 16 38 H 0.16 3.55 6.16 -2.91 -0.02 3.53 16 39 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 40 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.12 5.24 5.62 -2.91 -0.02 5.22 16 42 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -77.23 370.10 2.35 -74.88 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -1.60 Total: 23.48 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 5.54 Total: -30.83 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -3.34 Total: -79.67 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.27 Total: -31.40 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -77.23 2.35 -74.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076855134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.282 kcal (2) G-P(sol) polarization free energy of solvation -77.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds