Wall clock time and date at job start Tue Mar 31 2020 15:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39718 * 125.77789 * 2 1 4 4 C 1.36167 * 107.86052 * 179.83057 * 3 2 1 5 5 N 1.39332 * 126.26787 * 180.12227 * 4 3 2 6 6 C 1.34775 * 120.00155 * 0.35393 * 5 4 3 7 7 O 1.21740 * 119.99990 * 0.02562 * 6 5 4 8 8 C 1.46201 * 120.00072 * 180.02562 * 6 5 4 9 9 C 1.35051 * 120.00071 * 173.21779 * 8 6 5 10 10 C 1.46951 * 120.00088 * 348.67345 * 9 8 6 11 11 C 1.40034 * 120.09843 * 316.41107 * 10 9 8 12 12 C 1.37599 * 119.88928 * 179.75869 * 11 10 9 13 13 C 1.39178 * 120.10602 * 0.51438 * 12 11 10 14 14 O 1.35571 * 119.89890 * 179.75785 * 13 12 11 15 15 C 1.34773 * 116.99893 * 174.33693 * 14 13 12 16 16 H 1.08001 * 120.00214 * 5.06120 * 15 14 13 17 17 C 1.38721 * 120.00053 * 185.06325 * 15 14 13 18 18 N 1.31513 * 119.99543 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00393 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46906 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47417 * 119.99566 * 19 17 15 22 22 H 1.48501 * 109.46957 * 239.99873 * 19 17 15 23 23 C 1.39173 * 120.20187 * 359.73958 * 13 12 11 24 24 C 1.37597 * 120.10472 * 359.97438 * 23 13 12 25 25 N 1.35825 * 107.46355 * 0.42168 * 4 3 2 26 26 C 1.46499 * 126.09164 * 179.73353 * 25 4 3 27 27 N 1.30834 * 125.77086 * 180.30443 * 2 1 3 28 28 H 1.09004 * 109.47367 * 269.72179 * 1 2 3 29 29 H 1.08999 * 109.46900 * 149.71941 * 1 2 3 30 30 H 1.08998 * 109.46964 * 29.72319 * 1 2 3 31 31 H 1.08004 * 126.07230 * 359.97438 * 3 2 1 32 32 H 0.97002 * 119.99585 * 180.35898 * 5 4 3 33 33 H 1.08001 * 119.99933 * 353.20944 * 8 6 5 34 34 H 1.07998 * 119.99784 * 168.68153 * 9 8 6 35 35 H 1.07994 * 120.05487 * 359.97438 * 11 10 9 36 36 H 1.08003 * 119.94206 * 180.22701 * 12 11 10 37 37 H 0.97006 * 119.99653 * 179.97438 * 18 17 15 38 38 H 1.07998 * 119.94947 * 179.97438 * 23 13 12 39 39 H 1.07994 * 120.05339 * 180.02562 * 24 23 13 40 40 H 1.09003 * 109.46875 * 269.97625 * 26 25 4 41 41 H 1.08998 * 109.47115 * 29.97594 * 26 25 4 42 42 H 1.08996 * 109.47353 * 149.97692 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1335 0.0000 4 6 3.6195 0.7146 0.0038 5 7 4.7494 1.5299 0.0075 6 6 4.6128 2.8707 0.0147 7 8 3.5023 3.3695 0.0185 8 6 5.7984 3.7262 0.0180 9 6 5.6663 5.0639 -0.1129 10 6 4.3724 5.6395 -0.5056 11 6 3.6259 5.0522 -1.5346 12 6 2.4127 5.5918 -1.8955 13 6 1.9322 6.7256 -1.2468 14 8 0.7386 7.2566 -1.6091 15 6 0.2743 8.2814 -0.8670 16 1 0.8842 8.6968 -0.0784 17 6 -0.9869 8.8026 -1.1161 18 7 -1.7293 8.2970 -2.0767 19 14 -1.6301 10.2234 -0.0881 20 1 -0.6093 10.6070 0.9200 21 1 -1.9155 11.3833 -0.9702 22 1 -2.8771 9.8090 0.6038 23 6 2.6732 7.3157 -0.2272 24 6 3.8848 6.7798 0.1445 25 7 3.6088 -0.6436 -0.0034 26 6 4.7858 -1.5159 -0.0080 27 7 2.2718 -1.0615 -0.0056 28 1 -0.3634 -0.0050 1.0277 29 1 -0.3633 -0.8875 -0.5182 30 1 -0.3633 0.8924 -0.5095 31 1 1.9875 2.1598 -0.0004 32 1 5.6342 1.1325 0.0049 33 1 6.7799 3.2885 0.1253 34 1 6.5115 5.7105 0.0709 35 1 4.0001 4.1753 -2.0417 36 1 1.8345 5.1374 -2.6865 37 1 -2.6114 8.6612 -2.2506 38 1 2.2967 8.1957 0.2731 39 1 4.4589 7.2381 0.9361 40 1 5.0774 -1.7271 -1.0368 41 1 5.6077 -1.0198 0.5081 42 1 4.5479 -2.4498 0.5012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078781138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:46 Heat of formation + Delta-G solvation = 81.025069 kcal Electronic energy + Delta-G solvation = -26760.912176 eV Core-core repulsion = 22903.050961 eV Total energy + Delta-G solvation = -3857.861215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.43107 -39.73399 -38.74983 -36.62944 -34.99985 -33.55829 -33.20243 -32.18498 -30.17304 -29.82574 -29.05403 -27.87055 -25.58039 -25.44367 -23.87246 -21.95563 -21.51400 -20.53188 -20.23338 -18.94171 -17.98583 -17.55085 -17.02284 -16.70848 -15.92362 -15.40636 -14.81843 -14.68132 -14.53937 -14.31921 -13.84630 -13.73123 -13.53980 -13.50572 -13.40243 -13.11623 -13.07916 -12.67001 -12.42118 -12.29512 -12.24123 -12.14996 -11.72953 -11.43803 -11.05820 -10.77489 -10.75127 -10.64183 -10.47604 -10.41973 -9.57956 -9.50191 -9.22623 -8.76715 -8.74927 -8.07738 -7.90817 -6.93253 -6.48970 -4.04241 1.01335 1.89779 2.13479 2.38774 2.62363 2.93619 3.10522 3.12290 3.13898 3.18904 3.51914 3.94841 4.34250 4.63769 4.74567 4.86660 4.95780 5.06047 5.10827 5.12784 5.27112 5.30895 5.44689 5.60303 5.68382 5.73534 5.78462 5.88599 5.92373 6.03465 6.18689 6.19613 6.32863 6.36737 6.53724 6.73143 6.88120 6.98104 7.04561 7.08618 7.30218 7.35598 7.40749 7.46541 7.83434 7.86916 7.97596 8.23792 8.96589 9.67596 10.68588 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.003143 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.236396 B = 8905.479263 C =10496.742247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.087 3.913 3 C -0.274 4.274 4 C 0.310 3.690 5 N -0.654 5.654 6 C 0.545 3.455 7 O -0.475 6.475 8 C -0.273 4.273 9 C 0.044 3.956 10 C -0.200 4.200 11 C 0.010 3.990 12 C -0.200 4.200 13 C 0.173 3.827 14 O -0.170 6.170 15 C -0.390 4.390 16 H 0.095 0.905 17 C 0.040 3.960 18 N -0.857 5.857 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.251 4.251 24 C -0.037 4.037 25 N -0.401 5.401 26 C 0.104 3.896 27 N -0.301 5.301 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.177 0.823 32 H 0.404 0.596 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.271 0.729 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.424 -13.812 4.749 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.079 4.079 3 C -0.305 4.305 4 C 0.091 3.909 5 N -0.302 5.302 6 C 0.336 3.664 7 O -0.347 6.347 8 C -0.294 4.294 9 C 0.025 3.975 10 C -0.201 4.201 11 C -0.009 4.009 12 C -0.219 4.219 13 C 0.118 3.882 14 O -0.071 6.071 15 C -0.466 4.466 16 H 0.112 0.888 17 C -0.165 4.165 18 N -0.491 5.491 19 Si 0.767 3.233 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.200 1.200 23 C -0.270 4.270 24 C -0.055 4.055 25 N -0.190 5.190 26 C -0.038 4.038 27 N -0.124 5.124 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.194 0.806 32 H 0.239 0.761 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.119 0.881 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.393 -14.718 4.452 21.062 hybrid contribution 0.508 1.094 0.623 1.358 sum 14.901 -13.624 5.075 20.818 Atomic orbital electron populations 1.20202 0.86501 1.03463 1.02995 1.22261 0.97055 0.90624 0.97947 1.21700 0.88862 1.01518 1.18403 1.18160 0.89222 0.81964 1.01526 1.43050 1.06539 1.06370 1.74230 1.18564 0.91034 0.80046 0.76751 1.90957 1.26422 1.72081 1.45218 1.22333 0.96274 0.94406 1.16386 1.22392 0.96143 0.93610 0.85385 1.18290 0.97242 1.00624 1.03918 1.20450 0.92256 0.94372 0.93798 1.20018 0.98209 0.98165 1.05553 1.19533 0.86357 0.91002 0.91296 1.83905 1.28900 1.44555 1.49785 1.21459 1.00606 1.09191 1.15316 0.88761 1.25343 0.95001 0.99037 0.97168 1.70035 1.10411 1.40080 1.28547 0.85626 0.79150 0.79491 0.79063 1.19006 1.20096 1.20041 1.20960 0.97591 1.04743 1.03697 1.20737 0.94951 0.93154 0.96688 1.48527 1.06021 1.02172 1.62271 1.21710 0.84043 0.95022 1.02980 1.77331 0.84885 1.21691 1.28539 0.90527 0.91146 0.89885 0.80561 0.76096 0.85732 0.85625 0.88097 0.86701 0.91918 0.85584 0.87534 0.91069 0.90436 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.44 36.01 0.38 -0.51 16 2 C 0.09 1.33 7.20 -82.46 -0.59 0.74 16 3 C -0.27 -4.54 9.58 -39.77 -0.38 -4.92 16 4 C 0.31 4.40 7.68 -152.77 -1.17 3.22 16 5 N -0.65 -7.49 5.41 -12.67 -0.07 -7.56 16 6 C 0.55 7.61 6.74 -13.06 -0.09 7.52 16 7 O -0.47 -8.67 9.30 5.15 0.05 -8.62 16 8 C -0.27 -3.04 9.90 -37.52 -0.37 -3.41 16 9 C 0.04 0.56 9.80 -37.19 -0.36 0.19 16 10 C -0.20 -3.46 4.54 -105.03 -0.48 -3.94 16 11 C 0.01 0.19 6.59 -39.14 -0.26 -0.07 16 12 C -0.20 -4.44 9.97 -39.47 -0.39 -4.83 16 13 C 0.17 4.28 6.66 -38.89 -0.26 4.02 16 14 O -0.17 -4.88 9.74 0.76 0.01 -4.87 16 15 C -0.39 -10.89 9.48 30.91 0.29 -10.60 16 16 H 0.10 2.44 5.18 -52.49 -0.27 2.17 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -25.04 13.67 55.48 0.76 -24.28 16 19 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 C -0.25 -5.51 9.14 -39.47 -0.36 -5.88 16 24 C -0.04 -0.68 9.78 -39.15 -0.38 -1.06 16 25 N -0.40 -5.14 4.04 -67.06 -0.27 -5.41 16 26 C 0.10 0.76 11.30 59.85 0.68 1.44 16 27 N -0.30 -4.54 12.56 33.64 0.42 -4.11 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.18 3.34 5.82 -52.48 -0.31 3.03 16 32 H 0.40 2.94 7.97 -40.82 -0.33 2.61 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.10 1.76 7.02 -52.49 -0.37 1.39 16 36 H 0.11 2.51 8.06 -52.48 -0.42 2.09 16 37 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.13 2.76 5.62 -52.49 -0.29 2.47 16 39 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.35 7.52 -51.93 -0.39 -0.04 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 360.29 15.07 5.43 5.43 Total: -1.00 -35.12 360.29 -7.45 -42.57 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -4.90 Total: 8.54 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -3.85 Total: -17.10 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.84 Total: -41.36 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.06 Total: -13.49 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.12 -7.45 -42.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078781138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.596 kcal (2) G-P(sol) polarization free energy of solvation -35.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds