Wall clock time and date at job start Tue Mar 31 2020 15:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39718 * 125.77789 * 2 1 4 4 C 1.36167 * 107.86052 * 179.83057 * 3 2 1 5 5 N 1.39332 * 126.26787 * 180.12227 * 4 3 2 6 6 C 1.34775 * 120.00155 * 0.35393 * 5 4 3 7 7 O 1.21740 * 119.99990 * 0.02562 * 6 5 4 8 8 C 1.46201 * 120.00072 * 180.02562 * 6 5 4 9 9 C 1.35051 * 120.00071 * 173.21779 * 8 6 5 10 10 C 1.46951 * 120.00088 * 348.67345 * 9 8 6 11 11 C 1.40034 * 120.09843 * 316.41107 * 10 9 8 12 12 C 1.37599 * 119.88928 * 179.75869 * 11 10 9 13 13 C 1.39178 * 120.10602 * 0.51438 * 12 11 10 14 14 O 1.35571 * 119.89890 * 179.75785 * 13 12 11 15 15 C 1.34773 * 116.99893 * 174.33693 * 14 13 12 16 16 H 1.08001 * 120.00214 * 5.06120 * 15 14 13 17 17 C 1.38721 * 120.00053 * 185.06325 * 15 14 13 18 18 N 1.31513 * 119.99543 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00393 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46906 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47417 * 119.99566 * 19 17 15 22 22 H 1.48501 * 109.46957 * 239.99873 * 19 17 15 23 23 C 1.39173 * 120.20187 * 359.73958 * 13 12 11 24 24 C 1.37597 * 120.10472 * 359.97438 * 23 13 12 25 25 N 1.35825 * 107.46355 * 0.42168 * 4 3 2 26 26 C 1.46499 * 126.09164 * 179.73353 * 25 4 3 27 27 N 1.30834 * 125.77086 * 180.30443 * 2 1 3 28 28 H 1.09004 * 109.47367 * 269.72179 * 1 2 3 29 29 H 1.08999 * 109.46900 * 149.71941 * 1 2 3 30 30 H 1.08998 * 109.46964 * 29.72319 * 1 2 3 31 31 H 1.08004 * 126.07230 * 359.97438 * 3 2 1 32 32 H 0.97002 * 119.99585 * 180.35898 * 5 4 3 33 33 H 1.08001 * 119.99933 * 353.20944 * 8 6 5 34 34 H 1.07998 * 119.99784 * 168.68153 * 9 8 6 35 35 H 1.07994 * 120.05487 * 359.97438 * 11 10 9 36 36 H 1.08003 * 119.94206 * 180.22701 * 12 11 10 37 37 H 0.97006 * 119.99653 * 179.97438 * 18 17 15 38 38 H 1.07998 * 119.94947 * 179.97438 * 23 13 12 39 39 H 1.07994 * 120.05339 * 180.02562 * 24 23 13 40 40 H 1.09003 * 109.46875 * 269.97625 * 26 25 4 41 41 H 1.08998 * 109.47115 * 29.97594 * 26 25 4 42 42 H 1.08996 * 109.47353 * 149.97692 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1335 0.0000 4 6 3.6195 0.7146 0.0038 5 7 4.7494 1.5299 0.0075 6 6 4.6128 2.8707 0.0147 7 8 3.5023 3.3695 0.0185 8 6 5.7984 3.7262 0.0180 9 6 5.6663 5.0639 -0.1129 10 6 4.3724 5.6395 -0.5056 11 6 3.6259 5.0522 -1.5346 12 6 2.4127 5.5918 -1.8955 13 6 1.9322 6.7256 -1.2468 14 8 0.7386 7.2566 -1.6091 15 6 0.2743 8.2814 -0.8670 16 1 0.8842 8.6968 -0.0784 17 6 -0.9869 8.8026 -1.1161 18 7 -1.7293 8.2970 -2.0767 19 14 -1.6301 10.2234 -0.0881 20 1 -0.6093 10.6070 0.9200 21 1 -1.9155 11.3833 -0.9702 22 1 -2.8771 9.8090 0.6038 23 6 2.6732 7.3157 -0.2272 24 6 3.8848 6.7798 0.1445 25 7 3.6088 -0.6436 -0.0034 26 6 4.7858 -1.5159 -0.0080 27 7 2.2718 -1.0615 -0.0056 28 1 -0.3634 -0.0050 1.0277 29 1 -0.3633 -0.8875 -0.5182 30 1 -0.3633 0.8924 -0.5095 31 1 1.9875 2.1598 -0.0004 32 1 5.6342 1.1325 0.0049 33 1 6.7799 3.2885 0.1253 34 1 6.5115 5.7105 0.0709 35 1 4.0001 4.1753 -2.0417 36 1 1.8345 5.1374 -2.6865 37 1 -2.6114 8.6612 -2.2506 38 1 2.2967 8.1957 0.2731 39 1 4.4589 7.2381 0.9361 40 1 5.0774 -1.7271 -1.0368 41 1 5.6077 -1.0198 0.5081 42 1 4.5479 -2.4498 0.5012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078781138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:45 Heat of formation + Delta-G solvation = 57.111459 kcal Electronic energy + Delta-G solvation = -26761.949147 eV Core-core repulsion = 22903.050961 eV Total energy + Delta-G solvation = -3858.898187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.52537 -41.05417 -40.36454 -38.24764 -36.16041 -34.67051 -34.49760 -33.96431 -31.81496 -30.85061 -30.19615 -29.27406 -27.42652 -26.42498 -25.10372 -23.58715 -22.94358 -21.75417 -21.32959 -20.23041 -19.71287 -18.88346 -18.37415 -18.00568 -16.94927 -16.64532 -16.37382 -16.23575 -15.86926 -15.74497 -15.49266 -15.07695 -14.74706 -14.65502 -14.53636 -14.38217 -14.25433 -14.06126 -13.79615 -13.55631 -13.27415 -13.20164 -13.15887 -13.00412 -12.65423 -12.33949 -12.24689 -12.08710 -11.85333 -11.62591 -11.22379 -10.97939 -10.71036 -10.39740 -9.79016 -9.62941 -9.12754 -8.56710 -8.47607 -6.14617 -0.13493 0.67941 0.78686 1.13777 1.18740 1.34598 1.45408 1.53745 1.74324 2.17686 2.20572 2.42988 2.87845 3.21497 3.50739 3.53573 3.74387 4.02444 4.09096 4.15325 4.17132 4.33677 4.37837 4.53881 4.56629 4.59136 4.62266 4.76012 4.76396 4.84460 4.88056 5.02291 5.06347 5.08257 5.16541 5.25178 5.26460 5.44576 5.67720 5.73762 5.74090 5.82382 6.02352 6.03688 6.25172 6.38029 6.74123 6.96537 7.18142 7.78771 8.75763 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.003143 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.236396 B = 8905.479263 C =10496.742247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.073 3.927 3 C -0.314 4.314 4 C 0.315 3.685 5 N -0.631 5.631 6 C 0.532 3.468 7 O -0.525 6.525 8 C -0.229 4.229 9 C 0.023 3.977 10 C -0.167 4.167 11 C 0.012 3.988 12 C -0.220 4.220 13 C 0.130 3.870 14 O -0.231 6.231 15 C -0.414 4.414 16 H 0.103 0.897 17 C -0.024 4.024 18 N -0.920 5.920 19 Si 1.021 2.979 20 H -0.250 1.250 21 H -0.266 1.266 22 H -0.269 1.269 23 C -0.259 4.259 24 C -0.043 4.043 25 N -0.392 5.392 26 C 0.089 3.911 27 N -0.317 5.317 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.429 0.571 33 H 0.186 0.814 34 H 0.178 0.822 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.273 0.727 38 H 0.119 0.881 39 H 0.151 0.849 40 H 0.088 0.912 41 H 0.112 0.888 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.881 -15.400 6.996 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.092 4.092 3 C -0.346 4.346 4 C 0.094 3.906 5 N -0.281 5.281 6 C 0.324 3.676 7 O -0.400 6.400 8 C -0.249 4.249 9 C 0.004 3.996 10 C -0.168 4.168 11 C -0.006 4.006 12 C -0.239 4.239 13 C 0.079 3.921 14 O -0.137 6.137 15 C -0.490 4.490 16 H 0.121 0.879 17 C -0.221 4.221 18 N -0.558 5.558 19 Si 0.840 3.160 20 H -0.173 1.173 21 H -0.191 1.191 22 H -0.194 1.194 23 C -0.278 4.278 24 C -0.061 4.061 25 N -0.181 5.181 26 C -0.050 4.050 27 N -0.142 5.142 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.163 0.837 32 H 0.269 0.731 33 H 0.204 0.796 34 H 0.195 0.805 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.137 0.863 39 H 0.168 0.832 40 H 0.107 0.893 41 H 0.131 0.869 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 19.971 -16.389 6.712 26.692 hybrid contribution -0.680 1.119 -0.004 1.309 sum 19.291 -15.270 6.708 25.501 Atomic orbital electron populations 1.20249 0.85354 1.03693 1.03778 1.22562 0.98195 0.90347 0.98085 1.21564 0.90926 1.00609 1.21475 1.18097 0.89264 0.82906 1.00332 1.42846 1.06962 1.05508 1.72772 1.19388 0.91429 0.80951 0.75828 1.91000 1.28661 1.73172 1.47177 1.22847 0.97239 0.93162 1.11700 1.22676 0.94765 0.94856 0.87269 1.18895 0.98387 0.98658 1.00860 1.20666 0.91141 0.94459 0.94354 1.20173 0.99897 0.98183 1.05664 1.20011 0.86223 0.92477 0.93390 1.83877 1.31350 1.46458 1.52015 1.21922 1.01448 1.09645 1.15939 0.87926 1.26663 0.94853 1.02128 0.98506 1.70188 1.11204 1.42934 1.31495 0.84504 0.78587 0.75491 0.77442 1.17280 1.19096 1.19426 1.21103 0.98925 1.04758 1.03043 1.21193 0.93729 0.93627 0.97506 1.48890 1.06527 1.02142 1.60509 1.22244 0.82860 0.95043 1.04875 1.77258 0.86163 1.21735 1.29019 0.89454 0.89740 0.90750 0.83750 0.73105 0.79637 0.80456 0.86389 0.88386 0.91789 0.86296 0.83174 0.89306 0.86922 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.85 10.44 71.24 0.74 -1.11 16 2 C 0.07 2.30 7.20 43.07 0.31 2.61 16 3 C -0.31 -10.70 9.58 22.15 0.21 -10.49 16 4 C 0.32 8.35 7.68 131.20 1.01 9.36 16 5 N -0.63 -11.81 5.41 -312.19 -1.69 -13.49 16 6 C 0.53 12.79 6.74 86.31 0.58 13.37 16 7 O -0.52 -18.69 9.30 -4.48 -0.04 -18.73 16 8 C -0.23 -3.48 9.90 23.61 0.23 -3.24 16 9 C 0.02 0.44 9.80 23.82 0.23 0.67 16 10 C -0.17 -5.32 4.54 -20.13 -0.09 -5.41 16 11 C 0.01 0.46 6.59 22.55 0.15 0.61 16 12 C -0.22 -10.49 9.97 22.34 0.22 -10.27 16 13 C 0.13 6.94 6.66 22.72 0.15 7.09 16 14 O -0.23 -14.65 9.74 -20.20 -0.20 -14.85 16 15 C -0.41 -25.00 9.48 67.94 0.64 -24.35 16 16 H 0.10 5.69 5.18 -2.91 -0.02 5.68 16 17 C -0.02 -1.41 5.49 84.86 0.47 -0.94 16 18 N -0.92 -58.22 13.67 21.62 0.30 -57.93 16 19 Si 1.02 44.02 29.55 68.60 2.03 46.04 16 20 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 C -0.26 -11.82 9.14 22.34 0.20 -11.61 16 24 C -0.04 -1.49 9.78 22.55 0.22 -1.27 16 25 N -0.39 -9.08 4.04 -366.07 -1.48 -10.55 16 26 C 0.09 0.92 11.30 127.77 1.44 2.37 16 27 N -0.32 -9.30 12.56 -47.48 -0.60 -9.90 16 28 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.14 5.90 5.82 -2.91 -0.02 5.88 16 32 H 0.43 3.53 7.97 -92.71 -0.74 2.79 16 33 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.12 3.98 7.02 -2.91 -0.02 3.96 16 36 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 37 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 38 H 0.12 5.47 5.62 -2.91 -0.02 5.45 16 39 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.11 0.38 7.52 -2.39 -0.02 0.36 16 42 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -89.70 360.29 5.39 -84.31 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.33 Total: 27.73 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 6.73 Total: -32.64 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -3.47 Total: -91.88 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.24 Total: -33.58 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -89.70 5.39 -84.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078781138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.424 kcal (2) G-P(sol) polarization free energy of solvation -89.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds