Wall clock time and date at job start Tue Mar 31 2020 15:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30843 * 125.89901 * 2 1 4 4 N 1.40083 * 108.20566 * 180.25792 * 3 2 1 5 5 C 1.46498 * 126.03924 * 179.69705 * 4 3 2 6 6 C 1.34959 * 107.92319 * 359.71735 * 4 3 2 7 7 C 1.50704 * 126.12540 * 179.97438 * 6 4 3 8 8 C 1.35312 * 107.74568 * 359.97438 * 6 4 3 9 9 S 1.76199 * 126.03880 * 179.97438 * 8 6 4 10 10 O 1.42103 * 106.40363 * 336.46280 * 9 8 6 11 11 O 1.42098 * 106.40455 * 203.54107 * 9 8 6 12 12 N 1.65603 * 107.21476 * 90.00220 * 9 8 6 13 13 C 1.36942 * 119.99871 * 263.19936 * 12 9 8 14 14 H 1.07990 * 120.00061 * 128.14153 * 13 12 9 15 15 C 1.38813 * 120.00023 * 308.13741 * 13 12 9 16 16 N 1.31619 * 120.00278 * 155.03222 * 15 13 12 17 17 Si 1.86810 * 120.00042 * 335.03236 * 15 13 12 18 18 H 1.48498 * 109.46948 * 94.62813 * 17 15 13 19 19 H 1.48493 * 109.46784 * 214.62528 * 17 15 13 20 20 H 1.48501 * 109.46843 * 334.62479 * 17 15 13 21 21 C 1.46495 * 120.00230 * 83.20311 * 12 9 8 22 22 C 1.54968 * 110.92514 * 130.65250 * 21 12 9 23 23 C 1.54267 * 104.15778 * 156.29804 * 22 21 12 24 24 C 1.53875 * 106.64018 * 336.44644 * 23 22 21 25 25 C 1.54270 * 106.60011 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.46827 * 270.21350 * 1 2 3 27 27 H 1.08994 * 109.47099 * 30.21345 * 1 2 3 28 28 H 1.08995 * 109.47057 * 150.21239 * 1 2 3 29 29 H 1.09006 * 109.46951 * 270.02426 * 5 4 3 30 30 H 1.08996 * 109.46819 * 30.02176 * 5 4 3 31 31 H 1.09000 * 109.47142 * 150.02501 * 5 4 3 32 32 H 1.09003 * 109.46998 * 270.02858 * 7 6 4 33 33 H 1.08997 * 109.46761 * 30.02585 * 7 6 4 34 34 H 1.08995 * 109.46616 * 150.02766 * 7 6 4 35 35 H 0.96998 * 120.00091 * 180.02562 * 16 15 13 36 36 H 1.09006 * 110.67064 * 7.34485 * 21 12 9 37 37 H 1.08996 * 110.47580 * 37.64532 * 22 21 12 38 38 H 1.09001 * 110.52978 * 274.97315 * 22 21 12 39 39 H 1.09000 * 110.03424 * 217.13897 * 23 22 21 40 40 H 1.08996 * 110.03851 * 95.75467 * 23 22 21 41 41 H 1.09003 * 110.03641 * 119.26623 * 24 23 22 42 42 H 1.09005 * 110.03093 * 240.64623 * 24 23 22 43 43 H 1.09001 * 110.48513 * 142.28914 * 25 24 23 44 44 H 1.08995 * 110.48585 * 264.80284 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0060 5 6 4.7899 1.5008 -0.0143 6 6 3.6142 -0.7154 -0.0032 7 6 4.8351 -1.5990 -0.0082 8 6 2.3272 -1.1330 0.0048 9 16 1.7809 -2.8082 0.0107 10 8 2.8415 -3.5781 -0.5385 11 8 0.4653 -2.8031 -0.5262 12 7 1.6379 -3.2715 1.5941 13 6 2.6566 -3.9558 2.2019 14 1 3.0529 -3.6090 3.1447 15 6 3.1796 -5.0953 1.6062 16 7 4.4118 -5.4719 1.8747 17 14 2.1344 -6.0945 0.4234 18 1 2.4108 -5.6602 -0.9695 19 1 2.4643 -7.5352 0.5673 20 1 0.6974 -5.8824 0.7323 21 6 0.4218 -2.9494 2.3447 22 6 -0.1280 -4.2026 3.0719 23 6 -0.9603 -3.6281 4.2368 24 6 -0.4102 -2.2189 4.5183 25 6 0.7382 -1.9855 3.5150 26 1 -0.3633 0.0038 1.0277 27 1 -0.3633 0.8880 -0.5171 28 1 -0.3633 -0.8918 -0.5105 29 1 5.0772 1.7136 -1.0440 30 1 4.5592 2.4343 0.4989 31 1 5.6122 0.9992 0.4961 32 1 5.1239 -1.8137 -1.0371 33 1 5.6539 -1.0901 0.5004 34 1 4.6103 -2.5321 0.5083 35 1 4.7774 -6.2679 1.4582 36 1 -0.3349 -2.5225 1.6864 37 1 0.6911 -4.8125 3.4527 38 1 -0.7604 -4.7861 2.4027 39 1 -0.8485 -4.2560 5.1208 40 1 -2.0106 -3.5688 3.9518 41 1 -1.1934 -1.4756 4.3691 42 1 -0.0322 -2.1627 5.5392 43 1 0.7380 -0.9520 3.1687 44 1 1.6975 -2.2347 3.9685 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080214128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:37 Heat of formation + Delta-G solvation = 1.631211 kcal Electronic energy + Delta-G solvation = -28577.909429 eV Core-core repulsion = 24852.049389 eV Total energy + Delta-G solvation = -3725.860040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.86854 -37.90666 -36.04174 -34.55854 -34.08068 -33.81909 -31.77955 -31.64661 -29.26755 -28.05945 -27.00391 -26.68188 -25.20003 -24.07058 -20.67308 -19.77425 -19.59920 -19.19448 -18.92488 -17.40275 -16.27912 -16.08476 -15.57191 -15.31989 -14.89146 -14.77617 -14.16570 -13.78161 -13.50975 -13.32024 -13.11770 -12.97271 -12.75266 -12.67247 -12.45062 -12.36136 -12.06240 -11.97336 -11.67888 -11.63464 -11.40097 -11.37362 -10.88590 -10.73528 -10.67362 -10.56750 -10.50443 -10.32193 -10.06659 -10.00162 -9.85734 -9.74688 -9.31463 -8.73243 -8.71381 -8.45722 -7.76802 -6.53615 -4.18540 1.77124 2.11897 2.76957 2.83067 3.32687 3.46360 3.57485 4.29773 4.45962 4.68634 4.90236 4.94361 5.02101 5.14776 5.22271 5.24776 5.29886 5.35450 5.41633 5.49680 5.50338 5.81943 5.92324 5.98783 6.02333 6.05671 6.15714 6.18507 6.21862 6.25471 6.34327 6.40920 6.43249 6.52400 6.56125 6.73592 6.80430 6.91335 6.99057 7.01536 7.31748 7.34764 7.77754 7.97340 8.25266 9.01898 9.16975 10.49430 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.007735 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.039754 B = 3619.161151 C = 4719.442128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.152 3.848 3 N -0.315 5.315 4 N -0.379 5.379 5 C 0.098 3.902 6 C 0.204 3.796 7 C -0.113 4.113 8 C -0.795 4.795 9 S 2.576 3.424 10 O -0.958 6.958 11 O -1.003 7.003 12 N -0.830 5.830 13 C -0.277 4.277 14 H 0.093 0.907 15 C 0.105 3.895 16 N -0.821 5.821 17 Si 0.831 3.169 18 H -0.237 1.237 19 H -0.284 1.284 20 H -0.254 1.254 21 C 0.152 3.848 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.120 4.120 25 C -0.134 4.134 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.280 0.720 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.207 7.916 1.683 8.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.017 4.017 3 N -0.136 5.136 4 N -0.159 5.159 5 C -0.043 4.043 6 C 0.073 3.927 7 C -0.171 4.171 8 C -0.887 4.887 9 S 2.678 3.322 10 O -0.947 6.947 11 O -0.993 6.993 12 N -0.654 5.654 13 C -0.422 4.422 14 H 0.110 0.890 15 C -0.112 4.112 16 N -0.456 5.456 17 Si 0.655 3.345 18 H -0.161 1.161 19 H -0.211 1.211 20 H -0.178 1.178 21 C 0.044 3.956 22 C -0.163 4.163 23 C -0.160 4.160 24 C -0.158 4.158 25 C -0.174 4.174 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.129 0.871 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.105 8.932 0.702 9.203 hybrid contribution 0.117 -0.457 -0.363 0.595 sum -1.989 8.475 0.339 8.712 Atomic orbital electron populations 1.20685 0.86425 1.05231 1.03692 1.21787 0.96371 0.89039 0.94486 1.77174 0.86114 1.22570 1.27755 1.48784 1.05623 1.04468 1.56995 1.21829 0.84438 0.94959 1.03101 1.20979 0.96334 0.83915 0.91493 1.20919 0.91659 1.00166 1.04343 1.32154 0.98983 1.26788 1.30741 1.08595 0.73214 0.73183 0.77246 1.93444 1.56965 1.67030 1.77297 1.93293 1.38903 1.87261 1.79858 1.52929 1.20535 1.61278 1.30662 1.18564 1.11596 1.04462 1.07585 0.88986 1.25687 0.94946 0.95669 0.94898 1.69810 1.12256 1.23758 1.39736 0.87509 0.82005 0.79997 0.84984 1.16098 1.21127 1.17825 1.21753 0.86275 0.94881 0.92648 1.22636 0.99659 0.97908 0.96072 1.22085 0.98969 0.96239 0.98702 1.22049 0.97904 0.96800 0.99072 1.22710 0.99243 0.98757 0.96654 0.90232 0.91083 0.87060 0.90974 0.89486 0.89372 0.89547 0.91404 0.85587 0.90953 0.89849 0.89094 0.92294 0.92253 0.92551 0.92595 0.92423 0.92811 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 10.14 36.01 0.37 -1.37 16 2 C 0.15 3.05 7.21 -82.40 -0.59 2.46 16 3 N -0.32 -6.14 12.58 33.67 0.42 -5.72 16 4 N -0.38 -6.71 4.01 -63.88 -0.26 -6.97 16 5 C 0.10 1.16 11.27 59.85 0.67 1.84 16 6 C 0.20 4.01 6.92 -82.26 -0.57 3.44 16 7 C -0.11 -2.02 9.15 36.01 0.33 -1.69 16 8 C -0.79 -17.14 6.17 -40.01 -0.25 -17.38 16 9 S 2.58 61.24 4.41 -107.50 -0.47 60.76 16 10 O -0.96 -24.77 10.29 -57.17 -0.59 -25.36 16 11 O -1.00 -24.53 14.12 -57.17 -0.81 -25.34 16 12 N -0.83 -18.72 2.19 -51.46 -0.11 -18.83 16 13 C -0.28 -6.69 7.75 -15.06 -0.12 -6.80 16 14 H 0.09 2.29 7.21 -52.49 -0.38 1.91 16 15 C 0.10 2.69 4.48 -17.43 -0.08 2.61 16 16 N -0.82 -21.48 13.97 55.49 0.78 -20.71 16 17 Si 0.83 20.78 25.39 -169.99 -4.32 16.47 16 18 H -0.24 -6.27 6.12 56.52 0.35 -5.92 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.25 -6.17 7.11 56.52 0.40 -5.77 16 21 C 0.15 2.96 3.30 -65.90 -0.22 2.74 16 22 C -0.12 -2.23 6.32 -25.03 -0.16 -2.39 16 23 C -0.12 -1.75 6.80 -25.61 -0.17 -1.92 16 24 C -0.12 -1.69 6.80 -25.61 -0.17 -1.86 16 25 C -0.13 -2.28 6.41 -25.07 -0.16 -2.44 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.11 2.04 5.66 -51.93 -0.29 1.75 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.85 7.05 -51.93 -0.37 0.49 16 32 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.07 0.96 7.08 -51.93 -0.37 0.60 16 34 H 0.13 2.69 6.78 -51.93 -0.35 2.34 16 35 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.08 1.58 7.10 -51.93 -0.37 1.22 16 37 H 0.09 1.77 6.98 -51.93 -0.36 1.41 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 1.46 6.91 -51.93 -0.36 1.10 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -30.43 352.66 -7.85 -38.28 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.69 Total: 4.86 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -1.12 Total: -22.77 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.83 Total: -52.22 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -1.40 Total: -50.69 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.32 Total: 16.47 kcal Atomic # 16 Polarization: 61.24 SS G_CDS: -0.47 Total: 60.76 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.43 -7.85 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080214128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.911 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds