Wall clock time and date at job start Tue Mar 31 2020 15:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30843 * 125.89901 * 2 1 4 4 N 1.40083 * 108.20566 * 180.25792 * 3 2 1 5 5 C 1.46498 * 126.03924 * 179.69705 * 4 3 2 6 6 C 1.34959 * 107.92319 * 359.71735 * 4 3 2 7 7 C 1.50704 * 126.12540 * 179.97438 * 6 4 3 8 8 C 1.35312 * 107.74568 * 359.97438 * 6 4 3 9 9 S 1.76199 * 126.03880 * 179.97438 * 8 6 4 10 10 O 1.42103 * 106.40363 * 336.46280 * 9 8 6 11 11 O 1.42098 * 106.40455 * 203.54107 * 9 8 6 12 12 N 1.65603 * 107.21476 * 90.00220 * 9 8 6 13 13 C 1.36942 * 119.99871 * 263.19936 * 12 9 8 14 14 H 1.07990 * 120.00061 * 128.14153 * 13 12 9 15 15 C 1.38813 * 120.00023 * 308.13741 * 13 12 9 16 16 N 1.31619 * 120.00278 * 155.03222 * 15 13 12 17 17 Si 1.86810 * 120.00042 * 335.03236 * 15 13 12 18 18 H 1.48498 * 109.46948 * 94.62813 * 17 15 13 19 19 H 1.48493 * 109.46784 * 214.62528 * 17 15 13 20 20 H 1.48501 * 109.46843 * 334.62479 * 17 15 13 21 21 C 1.46495 * 120.00230 * 83.20311 * 12 9 8 22 22 C 1.54968 * 110.92514 * 130.65250 * 21 12 9 23 23 C 1.54267 * 104.15778 * 156.29804 * 22 21 12 24 24 C 1.53875 * 106.64018 * 336.44644 * 23 22 21 25 25 C 1.54270 * 106.60011 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.46827 * 270.21350 * 1 2 3 27 27 H 1.08994 * 109.47099 * 30.21345 * 1 2 3 28 28 H 1.08995 * 109.47057 * 150.21239 * 1 2 3 29 29 H 1.09006 * 109.46951 * 270.02426 * 5 4 3 30 30 H 1.08996 * 109.46819 * 30.02176 * 5 4 3 31 31 H 1.09000 * 109.47142 * 150.02501 * 5 4 3 32 32 H 1.09003 * 109.46998 * 270.02858 * 7 6 4 33 33 H 1.08997 * 109.46761 * 30.02585 * 7 6 4 34 34 H 1.08995 * 109.46616 * 150.02766 * 7 6 4 35 35 H 0.96998 * 120.00091 * 180.02562 * 16 15 13 36 36 H 1.09006 * 110.67064 * 7.34485 * 21 12 9 37 37 H 1.08996 * 110.47580 * 37.64532 * 22 21 12 38 38 H 1.09001 * 110.52978 * 274.97315 * 22 21 12 39 39 H 1.09000 * 110.03424 * 217.13897 * 23 22 21 40 40 H 1.08996 * 110.03851 * 95.75467 * 23 22 21 41 41 H 1.09003 * 110.03641 * 119.26623 * 24 23 22 42 42 H 1.09005 * 110.03093 * 240.64623 * 24 23 22 43 43 H 1.09001 * 110.48513 * 142.28914 * 25 24 23 44 44 H 1.08995 * 110.48585 * 264.80284 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0060 5 6 4.7899 1.5008 -0.0143 6 6 3.6142 -0.7154 -0.0032 7 6 4.8351 -1.5990 -0.0082 8 6 2.3272 -1.1330 0.0048 9 16 1.7809 -2.8082 0.0107 10 8 2.8415 -3.5781 -0.5385 11 8 0.4653 -2.8031 -0.5262 12 7 1.6379 -3.2715 1.5941 13 6 2.6566 -3.9558 2.2019 14 1 3.0529 -3.6090 3.1447 15 6 3.1796 -5.0953 1.6062 16 7 4.4118 -5.4719 1.8747 17 14 2.1344 -6.0945 0.4234 18 1 2.4108 -5.6602 -0.9695 19 1 2.4643 -7.5352 0.5673 20 1 0.6974 -5.8824 0.7323 21 6 0.4218 -2.9494 2.3447 22 6 -0.1280 -4.2026 3.0719 23 6 -0.9603 -3.6281 4.2368 24 6 -0.4102 -2.2189 4.5183 25 6 0.7382 -1.9855 3.5150 26 1 -0.3633 0.0038 1.0277 27 1 -0.3633 0.8880 -0.5171 28 1 -0.3633 -0.8918 -0.5105 29 1 5.0772 1.7136 -1.0440 30 1 4.5592 2.4343 0.4989 31 1 5.6122 0.9992 0.4961 32 1 5.1239 -1.8137 -1.0371 33 1 5.6539 -1.0901 0.5004 34 1 4.6103 -2.5321 0.5083 35 1 4.7774 -6.2679 1.4582 36 1 -0.3349 -2.5225 1.6864 37 1 0.6911 -4.8125 3.4527 38 1 -0.7604 -4.7861 2.4027 39 1 -0.8485 -4.2560 5.1208 40 1 -2.0106 -3.5688 3.9518 41 1 -1.1934 -1.4756 4.3691 42 1 -0.0322 -2.1627 5.5392 43 1 0.7380 -0.9520 3.1687 44 1 1.6975 -2.2347 3.9685 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080214128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:36 Heat of formation + Delta-G solvation = -18.019521 kcal Electronic energy + Delta-G solvation = -28578.761548 eV Core-core repulsion = 24852.049389 eV Total energy + Delta-G solvation = -3726.712159 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.33474 -39.37159 -37.96953 -36.49004 -35.78567 -35.18171 -33.60849 -33.09692 -30.51877 -29.38480 -28.51192 -28.17091 -26.45584 -25.84616 -22.21520 -21.30302 -20.92954 -20.74974 -20.58883 -19.13773 -17.92695 -17.74794 -17.19329 -16.77163 -16.41458 -16.30939 -15.98104 -15.38301 -14.96621 -14.88676 -14.52675 -14.38921 -14.09775 -14.05278 -13.96445 -13.72977 -13.64816 -13.40431 -13.34889 -13.11368 -13.03246 -12.91495 -12.48592 -12.40793 -12.36028 -12.22829 -11.98515 -11.79847 -11.75505 -11.69864 -11.34536 -11.13315 -11.02693 -10.67377 -10.14582 -9.99448 -9.54846 -8.51168 -6.12678 -0.04220 0.61072 1.25308 1.29968 1.42551 1.49155 1.52870 2.35031 2.65901 2.95159 3.21998 3.38450 3.50142 3.85485 3.93238 3.98755 3.99785 4.16797 4.20657 4.31221 4.40166 4.52994 4.55606 4.62955 4.68528 4.76528 4.78043 4.83735 4.88835 4.91819 5.02506 5.08693 5.11840 5.17161 5.23404 5.27074 5.36953 5.52646 5.55656 5.68738 5.70974 5.95441 6.03131 6.29152 6.48597 7.08173 7.30106 8.56165 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.007735 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.039754 B = 3619.161151 C = 4719.442128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.142 3.858 3 N -0.321 5.321 4 N -0.369 5.369 5 C 0.082 3.918 6 C 0.201 3.799 7 C -0.111 4.111 8 C -0.825 4.825 9 S 2.592 3.408 10 O -0.985 6.985 11 O -1.015 7.015 12 N -0.838 5.838 13 C -0.267 4.267 14 H 0.082 0.918 15 C 0.085 3.915 16 N -0.851 5.851 17 Si 0.838 3.162 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.248 1.248 21 C 0.136 3.864 22 C -0.128 4.128 23 C -0.114 4.114 24 C -0.113 4.113 25 C -0.128 4.128 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.281 0.719 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 10.329 2.514 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.026 4.026 3 N -0.143 5.143 4 N -0.148 5.148 5 C -0.057 4.057 6 C 0.067 3.933 7 C -0.169 4.169 8 C -0.922 4.922 9 S 2.696 3.304 10 O -0.974 6.974 11 O -1.005 7.005 12 N -0.663 5.663 13 C -0.410 4.410 14 H 0.100 0.900 15 C -0.128 4.128 16 N -0.487 5.487 17 Si 0.663 3.337 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.172 1.172 21 C 0.030 3.970 22 C -0.168 4.168 23 C -0.152 4.152 24 C -0.151 4.151 25 C -0.167 4.167 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.699 11.299 1.582 11.724 hybrid contribution 0.302 -0.985 -0.726 1.260 sum -2.396 10.315 0.856 10.624 Atomic orbital electron populations 1.20776 0.84839 1.05560 1.05069 1.22174 0.97651 0.88477 0.94322 1.77122 0.86969 1.22403 1.27801 1.49171 1.06434 1.04298 1.54937 1.22380 0.82967 0.95070 1.05262 1.21163 0.96148 0.85185 0.90801 1.20899 0.92304 0.98689 1.04982 1.31743 1.00697 1.25653 1.34076 1.07054 0.72630 0.73788 0.76965 1.93421 1.57642 1.68344 1.77981 1.93288 1.39332 1.87882 1.80017 1.52896 1.21374 1.61994 1.30082 1.18312 1.11432 1.04122 1.07138 0.90024 1.25883 0.95218 0.96374 0.95351 1.69820 1.12757 1.24710 1.41449 0.87374 0.82312 0.80655 0.83365 1.18755 1.19926 1.17179 1.22098 0.85216 0.96386 0.93339 1.22644 0.99496 0.97252 0.97373 1.22064 0.99290 0.96380 0.97491 1.22046 0.97219 0.97063 0.98810 1.22621 0.99707 0.98124 0.96284 0.88313 0.88666 0.88735 0.88757 0.87788 0.86907 0.88572 0.87503 0.89247 0.90891 0.89520 0.91143 0.93024 0.90874 0.90538 0.90330 0.90955 0.92418 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.36 10.14 71.24 0.72 -2.64 16 2 C 0.14 5.51 7.21 43.10 0.31 5.82 16 3 N -0.32 -11.79 12.58 -47.38 -0.60 -12.38 16 4 N -0.37 -12.11 4.01 -356.02 -1.43 -13.54 16 5 C 0.08 1.63 11.27 127.77 1.44 3.07 16 6 C 0.20 7.63 6.92 41.40 0.29 7.92 16 7 C -0.11 -3.84 9.15 71.24 0.65 -3.19 16 8 C -0.83 -35.15 6.17 21.99 0.14 -35.02 16 9 S 2.59 124.91 4.41 -56.49 -0.25 124.66 16 10 O -0.98 -52.32 10.29 -128.00 -1.32 -53.64 16 11 O -1.02 -50.14 14.12 -128.00 -1.81 -51.95 16 12 N -0.84 -38.31 2.19 -316.73 -0.69 -39.00 16 13 C -0.27 -13.26 7.75 84.03 0.65 -12.61 16 14 H 0.08 4.20 7.21 -2.92 -0.02 4.18 16 15 C 0.09 4.50 4.48 84.86 0.38 4.88 16 16 N -0.85 -45.91 13.97 21.65 0.30 -45.61 16 17 Si 0.84 42.96 25.39 68.60 1.74 44.70 16 18 H -0.26 -14.42 6.12 99.48 0.61 -13.81 16 19 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.25 -12.27 7.11 99.48 0.71 -11.56 16 21 C 0.14 5.25 3.30 46.31 0.15 5.40 16 22 C -0.13 -4.57 6.32 31.70 0.20 -4.37 16 23 C -0.11 -2.99 6.80 31.32 0.21 -2.78 16 24 C -0.11 -2.84 6.80 31.32 0.21 -2.63 16 25 C -0.13 -4.19 6.41 31.67 0.20 -3.98 16 26 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.09 3.39 5.66 -2.39 -0.01 3.38 16 29 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.11 1.70 7.05 -2.39 -0.02 1.68 16 32 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.11 2.76 7.08 -2.39 -0.02 2.74 16 34 H 0.09 3.87 6.78 -2.39 -0.02 3.86 16 35 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.09 3.24 7.10 -2.38 -0.02 3.22 16 37 H 0.07 2.79 6.98 -2.39 -0.02 2.77 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.06 2.22 6.91 -2.39 -0.02 2.20 16 Total: -1.00 -67.66 352.66 2.42 -65.24 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.90 Total: 21.65 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 5.56 Total: -40.12 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -2.41 Total: -110.53 kcal Atomic # 8 Polarization: -102.46 SS G_CDS: -3.12 Total: -105.59 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.74 Total: 44.70 kcal Atomic # 16 Polarization: 124.91 SS G_CDS: -0.25 Total: 124.66 kcal Total: -67.66 2.42 -65.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080214128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.216 kcal (2) G-P(sol) polarization free energy of solvation -67.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds