Wall clock time and date at job start Tue Mar 31 2020 14:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38884 * 120.74796 * 2 1 4 4 C 1.38027 * 119.33293 * 180.23217 * 3 2 1 5 5 N 1.31977 * 120.85080 * 359.77346 * 4 3 2 6 6 C 1.32390 * 121.62572 * 359.97438 * 5 4 3 7 7 N 1.39002 * 119.70750 * 180.02562 * 6 5 4 8 8 N 1.40099 * 119.99828 * 359.97438 * 7 6 5 9 9 C 1.34771 * 119.99744 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00285 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99682 * 179.97438 * 9 8 7 12 12 C 1.50704 * 109.47141 * 180.02562 * 11 9 8 13 13 C 1.38304 * 119.92889 * 269.72904 * 12 11 9 14 14 C 1.38103 * 120.06513 * 179.72611 * 13 12 11 15 15 C 1.38878 * 119.92924 * 0.56443 * 14 13 12 16 16 O 1.35753 * 120.06615 * 179.68190 * 15 14 13 17 17 C 1.34830 * 116.99796 * 174.48564 * 16 15 14 18 18 H 1.08001 * 120.00102 * 5.06861 * 17 16 15 19 19 C 1.38652 * 119.99924 * 185.05407 * 17 16 15 20 20 N 1.31553 * 120.00244 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00055 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46904 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46985 * 120.00315 * 21 19 17 24 24 H 1.48500 * 109.47036 * 240.00517 * 21 19 17 25 25 C 1.38875 * 119.86626 * 359.70935 * 15 14 13 26 26 C 1.38104 * 119.92856 * 359.97438 * 25 15 14 27 27 C 1.38298 * 120.74914 * 179.75808 * 2 1 3 28 28 H 1.08997 * 109.46682 * 270.24438 * 1 2 3 29 29 H 1.09001 * 109.46956 * 30.24380 * 1 2 3 30 30 H 1.08997 * 109.47090 * 150.24756 * 1 2 3 31 31 H 1.08001 * 120.33333 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.56983 * 179.79098 * 4 3 2 33 33 H 0.97001 * 119.99985 * 179.97438 * 7 6 5 34 34 H 0.97001 * 119.99594 * 0.02562 * 8 7 6 35 35 H 1.08998 * 109.47373 * 299.99859 * 11 9 8 36 36 H 1.08998 * 109.47045 * 60.00000 * 11 9 8 37 37 H 1.07993 * 119.96781 * 359.97438 * 13 12 11 38 38 H 1.08004 * 120.03379 * 180.27404 * 14 13 12 39 39 H 0.97001 * 120.00523 * 179.97438 * 20 19 17 40 40 H 1.07992 * 120.03957 * 179.97438 * 25 15 14 41 41 H 1.08002 * 119.96511 * 180.02562 * 26 25 15 42 42 H 1.07999 * 120.44735 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1936 0.0000 4 6 3.5969 1.1595 -0.0049 5 7 4.2455 0.0101 -0.0050 6 6 3.6049 -1.1485 -0.0001 7 7 4.3282 -2.3355 0.0001 8 7 5.7288 -2.3023 -0.0055 9 6 6.4300 -3.4533 -0.0048 10 8 5.8487 -4.5176 0.0011 11 6 7.9366 -3.4176 -0.0115 12 6 8.4725 -4.8261 -0.0099 13 6 8.7284 -5.4657 1.1894 14 6 9.2141 -6.7585 1.1942 15 6 9.4567 -7.4120 -0.0070 16 8 9.9402 -8.6805 -0.0055 17 6 10.0452 -9.2969 -1.2001 18 1 9.8285 -8.7545 -2.1085 19 6 10.4315 -10.6271 -1.2622 20 7 10.6952 -11.2879 -0.1557 21 14 10.5776 -11.4809 -2.9173 22 1 10.2296 -10.5255 -3.9996 23 1 11.9712 -11.9572 -3.1072 24 1 9.6485 -12.6386 -2.9607 25 6 9.2041 -6.7650 -1.2096 26 6 8.7122 -5.4746 -1.2077 27 6 2.2141 -1.1885 0.0050 28 1 -0.3632 0.0044 1.0277 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3633 -0.8922 -0.5100 31 1 1.6948 2.1389 0.0004 32 1 4.1529 2.0854 -0.0083 33 1 3.8632 -3.1868 0.0041 34 1 6.1937 -1.4510 -0.0092 35 1 8.2839 -2.8982 -0.9047 36 1 8.2915 -2.8924 0.8753 37 1 8.5443 -4.9551 2.1230 38 1 9.4095 -7.2591 2.1311 39 1 10.9652 -12.2185 -0.1991 40 1 9.3921 -7.2704 -2.1452 41 1 8.5152 -4.9710 -2.1426 42 1 1.6938 -2.1349 0.0086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088424086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:01 Heat of formation + Delta-G solvation = 33.791428 kcal Electronic energy + Delta-G solvation = -25331.401319 eV Core-core repulsion = 21471.491900 eV Total energy + Delta-G solvation = -3859.909419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69862 -39.75811 -38.79592 -36.72553 -36.00635 -34.06520 -32.76059 -32.33749 -31.25204 -30.13248 -28.92811 -28.13739 -26.40630 -25.05667 -23.75392 -22.13171 -21.94967 -21.34117 -20.26756 -18.22499 -17.95857 -17.79804 -16.91640 -16.44760 -16.10095 -15.83902 -15.54708 -14.86537 -14.67202 -14.50704 -14.41836 -14.27958 -13.85373 -13.61111 -13.51549 -13.34076 -13.07571 -12.90854 -12.70059 -12.59707 -12.04874 -12.01876 -11.72877 -11.47875 -11.26498 -10.86658 -10.76086 -10.58577 -10.40303 -10.01336 -9.83733 -9.80963 -9.64168 -9.30078 -8.80806 -8.12970 -7.67964 -7.15435 -6.42765 -4.01205 0.92427 1.06180 1.72707 2.27536 2.38018 2.65253 3.13919 3.15719 3.21214 3.55371 3.62893 3.98850 4.30519 4.39607 4.52487 4.73082 4.85384 4.86637 4.99815 5.10138 5.12646 5.18531 5.24204 5.30715 5.33543 5.37615 5.53935 5.62656 5.65711 5.74459 5.86598 6.04387 6.21825 6.24454 6.43944 6.59094 6.73052 6.93593 7.04052 7.08563 7.26008 7.38465 7.41274 7.47391 7.81900 7.85797 8.02659 8.32304 9.03062 9.73478 10.75382 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026507 B = 0.001853 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.072357 B =15109.068828 C =15542.688689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.005 3.995 3 C -0.240 4.240 4 C 0.157 3.843 5 N -0.554 5.554 6 C 0.410 3.590 7 N -0.519 5.519 8 N -0.526 5.526 9 C 0.507 3.493 10 O -0.524 6.524 11 C -0.066 4.066 12 C -0.173 4.173 13 C -0.058 4.058 14 C -0.192 4.192 15 C 0.158 3.842 16 O -0.178 6.178 17 C -0.390 4.390 18 H 0.093 0.907 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.233 4.233 26 C -0.054 4.054 27 C -0.236 4.236 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.131 0.869 32 H 0.157 0.843 33 H 0.441 0.559 34 H 0.429 0.571 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.269 0.731 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.562 25.446 -0.226 29.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.003 4.003 3 C -0.263 4.263 4 C 0.000 4.000 5 N -0.274 5.274 6 C 0.174 3.826 7 N -0.247 5.247 8 N -0.274 5.274 9 C 0.294 3.706 10 O -0.397 6.397 11 C -0.108 4.108 12 C -0.174 4.174 13 C -0.076 4.076 14 C -0.211 4.211 15 C 0.104 3.896 16 O -0.081 6.081 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.252 4.252 26 C -0.073 4.073 27 C -0.262 4.262 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.149 0.851 32 H 0.174 0.826 33 H 0.285 0.715 34 H 0.271 0.729 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.145 0.855 41 H 0.123 0.877 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.705 24.209 0.014 28.325 hybrid contribution -0.870 -0.324 -0.872 1.274 sum -15.575 23.885 -0.859 28.528 Atomic orbital electron populations 1.20847 0.90236 1.03382 1.02983 1.20003 0.96377 0.92158 0.91761 1.21703 0.95367 0.98449 1.10780 1.22352 0.91701 0.94560 0.91426 1.67035 1.40838 0.97403 1.22142 1.18206 0.87570 0.85621 0.91241 1.43268 0.94485 1.06185 1.80767 1.45125 0.94016 1.10794 1.77500 1.21476 0.90494 0.82347 0.76323 1.90762 1.71187 1.29355 1.48406 1.20311 0.88289 0.97675 1.04491 1.18564 1.10156 0.94878 0.93817 1.20412 0.97153 0.93736 0.96297 1.20158 1.09142 0.95560 0.96243 1.19391 0.90740 0.86184 0.93281 1.83978 1.70084 1.20964 1.33083 1.21385 1.47768 0.94334 0.83192 0.88995 1.25294 0.96572 0.95442 0.99269 1.70048 1.42495 1.10333 1.26890 0.85645 0.78265 0.79332 0.80167 1.19101 1.20155 1.20153 1.21106 1.09554 0.96139 0.98424 1.20520 0.96486 0.94094 0.96172 1.21020 0.91891 0.99651 1.13632 0.90352 0.90888 0.90960 0.85107 0.82601 0.71493 0.72944 0.88456 0.88411 0.87288 0.86495 0.92093 0.85541 0.87737 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.06 36.01 0.36 -0.18 16 2 C 0.01 0.04 5.91 -104.36 -0.62 -0.58 16 3 C -0.24 -1.64 9.81 -39.42 -0.39 -2.03 16 4 C 0.16 1.22 11.17 -17.57 -0.20 1.02 16 5 N -0.55 -5.63 9.37 -12.44 -0.12 -5.75 16 6 C 0.41 4.28 7.59 -155.03 -1.18 3.10 16 7 N -0.52 -5.86 6.42 31.13 0.20 -5.66 16 8 N -0.53 -5.98 6.29 31.22 0.20 -5.79 16 9 C 0.51 7.06 7.94 -10.99 -0.09 6.97 16 10 O -0.52 -9.67 15.87 5.56 0.09 -9.58 16 11 C -0.07 -0.82 5.83 -29.03 -0.17 -0.99 16 12 C -0.17 -2.99 4.38 -104.57 -0.46 -3.44 16 13 C -0.06 -1.06 9.69 -39.61 -0.38 -1.45 16 14 C -0.19 -4.20 9.99 -39.39 -0.39 -4.60 16 15 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 16 O -0.18 -5.20 9.76 0.04 0.00 -5.20 16 17 C -0.39 -11.15 9.49 30.89 0.29 -10.85 16 18 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.68 13.67 55.48 0.76 -24.92 16 21 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 C -0.23 -5.24 9.17 -39.39 -0.36 -5.60 16 26 C -0.05 -1.03 9.69 -39.61 -0.38 -1.41 16 27 C -0.24 -2.03 9.64 -39.22 -0.38 -2.41 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.26 8.10 -51.93 -0.42 -0.17 16 30 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 31 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 32 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.44 4.95 7.99 -182.60 -1.46 3.49 16 34 H 0.43 4.06 7.95 -182.60 -1.45 2.61 16 35 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.12 2.47 8.06 -52.48 -0.42 2.04 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 41 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -35.40 368.71 -10.29 -45.69 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -7.26 Total: 7.57 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -4.69 Total: -17.79 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 1.04 Total: -42.12 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.09 Total: -14.78 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.40 -10.29 -45.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088424086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.481 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds