Wall clock time and date at job start Tue Mar 31 2020 14:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38884 * 120.74796 * 2 1 4 4 C 1.38027 * 119.33293 * 180.23217 * 3 2 1 5 5 N 1.31977 * 120.85080 * 359.77346 * 4 3 2 6 6 C 1.32390 * 121.62572 * 359.97438 * 5 4 3 7 7 N 1.39002 * 119.70750 * 180.02562 * 6 5 4 8 8 N 1.40099 * 119.99828 * 359.97438 * 7 6 5 9 9 C 1.34771 * 119.99744 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00285 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99682 * 179.97438 * 9 8 7 12 12 C 1.50704 * 109.47141 * 180.02562 * 11 9 8 13 13 C 1.38304 * 119.92889 * 269.72904 * 12 11 9 14 14 C 1.38103 * 120.06513 * 179.72611 * 13 12 11 15 15 C 1.38878 * 119.92924 * 0.56443 * 14 13 12 16 16 O 1.35753 * 120.06615 * 179.68190 * 15 14 13 17 17 C 1.34830 * 116.99796 * 174.48564 * 16 15 14 18 18 H 1.08001 * 120.00102 * 5.06861 * 17 16 15 19 19 C 1.38652 * 119.99924 * 185.05407 * 17 16 15 20 20 N 1.31553 * 120.00244 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00055 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46904 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46985 * 120.00315 * 21 19 17 24 24 H 1.48500 * 109.47036 * 240.00517 * 21 19 17 25 25 C 1.38875 * 119.86626 * 359.70935 * 15 14 13 26 26 C 1.38104 * 119.92856 * 359.97438 * 25 15 14 27 27 C 1.38298 * 120.74914 * 179.75808 * 2 1 3 28 28 H 1.08997 * 109.46682 * 270.24438 * 1 2 3 29 29 H 1.09001 * 109.46956 * 30.24380 * 1 2 3 30 30 H 1.08997 * 109.47090 * 150.24756 * 1 2 3 31 31 H 1.08001 * 120.33333 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.56983 * 179.79098 * 4 3 2 33 33 H 0.97001 * 119.99985 * 179.97438 * 7 6 5 34 34 H 0.97001 * 119.99594 * 0.02562 * 8 7 6 35 35 H 1.08998 * 109.47373 * 299.99859 * 11 9 8 36 36 H 1.08998 * 109.47045 * 60.00000 * 11 9 8 37 37 H 1.07993 * 119.96781 * 359.97438 * 13 12 11 38 38 H 1.08004 * 120.03379 * 180.27404 * 14 13 12 39 39 H 0.97001 * 120.00523 * 179.97438 * 20 19 17 40 40 H 1.07992 * 120.03957 * 179.97438 * 25 15 14 41 41 H 1.08002 * 119.96511 * 180.02562 * 26 25 15 42 42 H 1.07999 * 120.44735 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1936 0.0000 4 6 3.5969 1.1595 -0.0049 5 7 4.2455 0.0101 -0.0050 6 6 3.6049 -1.1485 -0.0001 7 7 4.3282 -2.3355 0.0001 8 7 5.7288 -2.3023 -0.0055 9 6 6.4300 -3.4533 -0.0048 10 8 5.8487 -4.5176 0.0011 11 6 7.9366 -3.4176 -0.0115 12 6 8.4725 -4.8261 -0.0099 13 6 8.7284 -5.4657 1.1894 14 6 9.2141 -6.7585 1.1942 15 6 9.4567 -7.4120 -0.0070 16 8 9.9402 -8.6805 -0.0055 17 6 10.0452 -9.2969 -1.2001 18 1 9.8285 -8.7545 -2.1085 19 6 10.4315 -10.6271 -1.2622 20 7 10.6952 -11.2879 -0.1557 21 14 10.5776 -11.4809 -2.9173 22 1 10.2296 -10.5255 -3.9996 23 1 11.9712 -11.9572 -3.1072 24 1 9.6485 -12.6386 -2.9607 25 6 9.2041 -6.7650 -1.2096 26 6 8.7122 -5.4746 -1.2077 27 6 2.2141 -1.1885 0.0050 28 1 -0.3632 0.0044 1.0277 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3633 -0.8922 -0.5100 31 1 1.6948 2.1389 0.0004 32 1 4.1529 2.0854 -0.0083 33 1 3.8632 -3.1868 0.0041 34 1 6.1937 -1.4510 -0.0092 35 1 8.2839 -2.8982 -0.9047 36 1 8.2915 -2.8924 0.8753 37 1 8.5443 -4.9551 2.1230 38 1 9.4095 -7.2591 2.1311 39 1 10.9652 -12.2185 -0.1991 40 1 9.3921 -7.2704 -2.1452 41 1 8.5152 -4.9710 -2.1426 42 1 1.6938 -2.1349 0.0086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088424086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:00 Heat of formation + Delta-G solvation = 10.452788 kcal Electronic energy + Delta-G solvation = -25332.413358 eV Core-core repulsion = 21471.491900 eV Total energy + Delta-G solvation = -3860.921459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.45225 -40.95522 -40.34094 -38.30717 -37.03002 -34.64289 -34.41734 -33.61915 -32.54426 -31.77956 -29.78218 -28.68592 -27.91424 -26.84359 -24.37019 -23.64143 -23.09664 -22.32579 -21.59077 -19.85506 -19.10211 -18.74501 -18.70862 -17.17148 -16.75117 -16.71902 -16.64831 -16.35957 -16.09934 -15.94412 -15.52131 -15.40655 -15.14305 -15.07456 -14.81005 -14.42176 -14.18316 -13.97460 -13.61682 -13.57452 -13.29984 -12.99649 -12.95696 -12.58698 -12.52652 -12.47241 -12.30486 -12.25740 -12.10643 -11.18426 -11.16287 -10.79616 -10.49557 -10.42270 -10.39026 -9.76534 -8.92045 -8.48142 -8.46551 -6.16263 0.33316 0.44423 0.57296 0.61563 1.05865 1.33410 1.42505 1.52197 1.61312 2.16811 2.74680 2.91787 2.93739 3.16711 3.51654 3.72290 3.80081 3.90833 4.04689 4.05470 4.17858 4.20624 4.33833 4.47098 4.48011 4.59585 4.69464 4.76069 4.80244 4.83208 4.85919 5.01896 5.08100 5.14374 5.23066 5.29847 5.47606 5.55297 5.59478 5.71410 5.76631 5.90042 6.02468 6.21520 6.23172 6.57029 6.96521 7.09100 7.39139 7.77787 8.75494 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026507 B = 0.001853 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.072357 B =15109.068828 C =15542.688689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.002 4.002 3 C -0.234 4.234 4 C 0.144 3.856 5 N -0.572 5.572 6 C 0.388 3.612 7 N -0.531 5.531 8 N -0.509 5.509 9 C 0.509 3.491 10 O -0.579 6.579 11 C -0.064 4.064 12 C -0.146 4.146 13 C -0.055 4.055 14 C -0.207 4.207 15 C 0.113 3.887 16 O -0.233 6.233 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.025 4.025 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.252 1.252 23 H -0.265 1.265 24 H -0.269 1.269 25 C -0.245 4.245 26 C -0.058 4.058 27 C -0.246 4.246 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.158 0.842 32 H 0.183 0.817 33 H 0.437 0.563 34 H 0.439 0.561 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.148 0.852 38 H 0.112 0.888 39 H 0.273 0.727 40 H 0.117 0.883 41 H 0.139 0.861 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.213 29.768 -1.280 34.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.010 4.010 3 C -0.257 4.257 4 C -0.013 4.013 5 N -0.292 5.292 6 C 0.153 3.847 7 N -0.261 5.261 8 N -0.256 5.256 9 C 0.297 3.703 10 O -0.457 6.457 11 C -0.105 4.105 12 C -0.147 4.147 13 C -0.073 4.073 14 C -0.226 4.226 15 C 0.063 3.937 16 O -0.140 6.140 17 C -0.490 4.490 18 H 0.118 0.882 19 C -0.222 4.222 20 N -0.559 5.559 21 Si 0.839 3.161 22 H -0.176 1.176 23 H -0.190 1.190 24 H -0.194 1.194 25 C -0.264 4.264 26 C -0.076 4.076 27 C -0.272 4.272 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.176 0.824 32 H 0.200 0.800 33 H 0.281 0.719 34 H 0.283 0.717 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.166 0.834 38 H 0.130 0.870 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.157 0.843 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.383 28.674 -1.035 33.040 hybrid contribution -0.589 -1.161 -0.438 1.374 sum -16.972 27.512 -1.472 32.360 Atomic orbital electron populations 1.20907 0.88310 1.04287 1.03783 1.20406 0.97862 0.91851 0.90853 1.22080 0.95255 0.99451 1.08866 1.22898 0.92586 0.94773 0.91021 1.67022 1.41608 0.97882 1.22651 1.18422 0.88162 0.85540 0.92549 1.43356 0.94145 1.06540 1.82010 1.44884 0.94487 1.10581 1.75698 1.21556 0.90991 0.82028 0.75728 1.90765 1.72239 1.31243 1.51406 1.20432 0.87058 0.94591 1.08376 1.19159 1.06085 0.96961 0.92535 1.20894 0.95391 0.92293 0.98726 1.20446 1.09694 0.97199 0.95275 1.19950 0.92699 0.85631 0.95397 1.83939 1.73265 1.23187 1.33633 1.21865 1.48257 0.95166 0.83675 0.88220 1.26616 0.95902 0.95836 1.03829 1.70191 1.45080 1.10920 1.29751 0.84515 0.78701 0.78020 0.74848 1.17556 1.19026 1.19417 1.21227 1.10194 0.97776 0.97215 1.20948 0.95266 0.92745 0.98620 1.21249 0.91506 1.00770 1.13681 0.89477 0.89413 0.90691 0.82428 0.79974 0.71886 0.71684 0.84726 0.84467 0.83423 0.86959 0.91833 0.86498 0.84291 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.06 71.24 0.72 -0.03 16 2 C 0.00 -0.02 5.91 -19.69 -0.12 -0.14 16 3 C -0.23 -2.47 9.81 22.37 0.22 -2.25 16 4 C 0.14 1.82 11.17 84.62 0.95 2.77 16 5 N -0.57 -10.34 9.37 -193.26 -1.81 -12.16 16 6 C 0.39 7.51 7.59 133.07 1.01 8.52 16 7 N -0.53 -11.31 6.42 -55.43 -0.36 -11.67 16 8 N -0.51 -10.26 6.29 -173.54 -1.09 -11.35 16 9 C 0.51 12.69 7.94 87.66 0.70 13.39 16 10 O -0.58 -20.59 15.87 -3.02 -0.05 -20.64 16 11 C -0.06 -1.27 5.83 29.10 0.17 -1.10 16 12 C -0.15 -4.62 4.38 -19.83 -0.09 -4.71 16 13 C -0.06 -1.93 9.69 22.25 0.22 -1.72 16 14 C -0.21 -9.33 9.99 22.39 0.22 -9.11 16 15 C 0.11 5.96 6.65 22.58 0.15 6.11 16 16 O -0.23 -14.68 9.76 -22.77 -0.22 -14.90 16 17 C -0.41 -25.05 9.49 67.92 0.64 -24.40 16 18 H 0.10 5.58 5.20 -2.91 -0.02 5.57 16 19 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 20 N -0.92 -58.12 13.67 21.61 0.30 -57.82 16 21 Si 1.02 44.31 29.55 68.60 2.03 46.33 16 22 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 25 C -0.24 -11.29 9.17 22.39 0.21 -11.09 16 26 C -0.06 -2.09 9.69 22.25 0.22 -1.87 16 27 C -0.25 -3.90 9.64 22.50 0.22 -3.68 16 28 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.09 0.32 8.10 -2.39 -0.02 0.30 16 30 H 0.07 0.45 8.10 -2.39 -0.02 0.43 16 31 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 32 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.44 9.68 7.99 -213.32 -1.71 7.98 16 34 H 0.44 6.85 7.95 -213.32 -1.70 5.16 16 35 H 0.13 1.80 8.08 -2.39 -0.02 1.78 16 36 H 0.14 1.77 8.08 -2.39 -0.02 1.75 16 37 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 38 H 0.11 5.01 8.06 -2.91 -0.02 4.98 16 39 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 40 H 0.12 5.48 5.64 -2.91 -0.02 5.47 16 41 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 42 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -84.60 368.71 2.37 -82.24 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -2.32 Total: 30.23 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 5.89 Total: -30.27 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -2.96 Total: -92.99 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.27 Total: -35.54 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -84.60 2.37 -82.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088424086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.688 kcal (2) G-P(sol) polarization free energy of solvation -84.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds