Wall clock time and date at job start Tue Mar 31 2020 16:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46833 * 2 1 4 4 N 1.31793 * 119.03342 * 90.00477 * 3 2 1 5 5 C 1.32267 * 120.89244 * 180.02562 * 4 3 2 6 6 C 1.39233 * 119.01269 * 359.97438 * 5 4 3 7 7 N 1.39976 * 120.86740 * 180.02562 * 6 5 4 8 8 C 1.34779 * 120.00375 * 25.71527 * 7 6 5 9 9 O 1.21286 * 119.99612 * 5.67548 * 8 7 6 10 10 C 1.50697 * 120.00072 * 185.67541 * 8 7 6 11 11 C 1.50701 * 109.46827 * 179.97438 * 10 8 7 12 12 C 1.38332 * 119.96284 * 269.97743 * 11 10 8 13 13 C 1.38283 * 120.13620 * 180.02562 * 12 11 10 14 14 C 1.38125 * 120.06644 * 359.68089 * 13 12 11 15 15 C 1.38850 * 119.93233 * 0.59176 * 14 13 12 16 16 O 1.35750 * 120.06988 * 179.69927 * 15 14 13 17 17 C 1.34831 * 117.00023 * 354.46486 * 16 15 14 18 18 H 1.07999 * 119.99902 * 5.01666 * 17 16 15 19 19 C 1.38651 * 120.00158 * 185.01884 * 17 16 15 20 20 N 1.31561 * 119.99888 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00064 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47292 * 89.99970 * 21 19 17 23 23 H 1.48508 * 109.47082 * 209.99627 * 21 19 17 24 24 H 1.48500 * 109.46905 * 329.99376 * 21 19 17 25 25 C 1.38079 * 119.96910 * 90.00060 * 11 10 8 26 26 C 1.39238 * 118.26072 * 0.28170 * 6 5 4 27 27 N 1.31794 * 119.03764 * 270.02612 * 3 2 1 28 28 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47262 * 299.99691 * 1 2 3 30 30 H 1.08998 * 109.47679 * 59.99601 * 1 2 3 31 31 H 1.09003 * 109.46680 * 240.01002 * 2 1 3 32 32 H 1.08994 * 109.47201 * 120.00360 * 2 1 3 33 33 H 1.08002 * 120.49298 * 179.97438 * 5 4 3 34 34 H 0.97010 * 120.00101 * 205.70442 * 7 6 5 35 35 H 1.08999 * 109.46942 * 60.00152 * 10 8 7 36 36 H 1.08991 * 109.47123 * 299.99648 * 10 8 7 37 37 H 1.07997 * 119.92879 * 0.02603 * 12 11 10 38 38 H 1.07993 * 119.96272 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.02975 * 180.31962 * 14 13 12 40 40 H 0.97002 * 119.99889 * 180.02562 * 20 19 17 41 41 H 1.08000 * 120.02875 * 359.97438 * 25 11 10 42 42 H 1.08002 * 120.48830 * 179.69653 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2456 2.0239 1.1523 5 6 2.6857 3.2705 1.1952 6 6 2.9237 3.9441 0.0002 7 7 3.3902 5.2638 0.0003 8 6 4.0924 5.7304 1.0518 9 8 4.4087 4.9800 1.9507 10 6 4.4845 7.1842 1.1108 11 6 5.2559 7.4454 2.3788 12 6 4.5864 7.8184 3.5304 13 6 5.2908 8.0594 4.6957 14 6 6.6650 7.9220 4.7147 15 6 7.3405 7.5532 3.5589 16 8 8.6916 7.4232 3.5729 17 6 9.3289 7.7768 4.7072 18 1 8.7601 8.0667 5.5783 19 6 10.7146 7.7684 4.7554 20 7 11.4075 7.4149 3.6944 21 14 11.5975 8.2576 6.3272 22 1 11.8085 7.0543 7.1715 23 1 12.9114 8.8618 5.9894 24 1 10.7746 9.2456 7.0701 25 6 6.6303 7.3126 2.3897 26 6 2.6803 3.2724 -1.1950 27 7 2.2450 2.0242 -1.1523 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.8579 3.7586 2.1431 34 1 3.2083 5.8427 -0.7567 35 1 3.5874 7.8032 1.0977 36 1 5.1067 7.4279 0.2498 37 1 3.5115 7.9215 3.5193 38 1 4.7653 8.3509 5.5930 39 1 7.2140 8.1053 5.6265 40 1 12.3769 7.4086 3.7283 41 1 7.1523 7.0214 1.4902 42 1 2.8480 3.7623 -2.1428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089830859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:09 Heat of formation + Delta-G solvation = 9.659200 kcal Electronic energy + Delta-G solvation = -25867.010636 eV Core-core repulsion = 22006.054765 eV Total energy + Delta-G solvation = -3860.955871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.59608 -40.01588 -38.88089 -36.64354 -35.69243 -33.91677 -33.79300 -32.47889 -32.10468 -29.92166 -29.16324 -27.19140 -25.35229 -25.07609 -24.76946 -22.39279 -21.71143 -21.33767 -20.49091 -18.54716 -17.80575 -17.47000 -17.04685 -16.85743 -16.64632 -15.58918 -15.18729 -15.01128 -14.47696 -14.42336 -14.35664 -14.20215 -14.00770 -13.71980 -13.54342 -13.47448 -12.78619 -12.71333 -12.47632 -12.16223 -11.97082 -11.61441 -11.48732 -11.36853 -11.29929 -11.21544 -11.03057 -10.85465 -10.83261 -10.65905 -10.45089 -10.08857 -9.40119 -9.35184 -8.84052 -8.60459 -8.12191 -7.24473 -6.44362 -4.03497 0.59759 0.86844 1.99284 2.35223 2.40871 2.73316 3.13617 3.13884 3.18787 3.54141 3.74529 3.96644 3.97127 4.23003 4.38543 4.59753 4.71948 4.82046 4.94840 5.00479 5.03537 5.05941 5.13540 5.29416 5.38619 5.53862 5.57453 5.59139 5.70373 5.75297 5.78594 5.88936 5.93236 6.14454 6.30330 6.31141 6.61212 6.76903 6.87726 6.97148 7.05423 7.20637 7.34589 7.42302 7.79173 7.85101 7.91879 8.00417 9.01315 9.71245 10.73739 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.002213 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.750974 B =12647.130299 C =13109.379965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C 0.289 3.711 4 N -0.493 5.493 5 C 0.143 3.857 6 C 0.049 3.951 7 N -0.668 5.668 8 C 0.514 3.486 9 O -0.493 6.493 10 C -0.089 4.089 11 C -0.039 4.039 12 C -0.196 4.196 13 C -0.074 4.074 14 C -0.228 4.228 15 C 0.154 3.846 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.267 1.267 25 C -0.173 4.173 26 C 0.118 3.882 27 N -0.497 5.497 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.186 0.814 34 H 0.415 0.585 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.270 0.730 41 H 0.114 0.886 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.259 -5.040 -9.860 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C 0.021 3.979 4 N -0.207 5.207 5 C -0.026 4.026 6 C -0.052 4.052 7 N -0.315 5.315 8 C 0.302 3.698 9 O -0.365 6.365 10 C -0.129 4.129 11 C -0.040 4.040 12 C -0.215 4.215 13 C -0.092 4.092 14 C -0.247 4.247 15 C 0.100 3.900 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.193 4.193 26 C -0.052 4.052 27 N -0.210 5.210 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.203 0.797 34 H 0.251 0.749 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.132 0.868 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -19.891 -6.552 -9.391 22.951 hybrid contribution 0.798 1.545 0.389 1.782 sum -19.092 -5.007 -9.002 21.694 Atomic orbital electron populations 1.21689 0.93723 1.02384 1.02315 1.20299 0.96613 0.88076 1.04167 1.23170 0.93560 0.97682 0.83496 1.68331 1.12556 1.09657 1.30130 1.23704 0.90438 0.89752 0.98715 1.19673 1.00646 0.87863 0.96980 1.43573 1.54709 1.10346 1.22845 1.21209 0.76316 0.91315 0.80973 1.90756 1.50916 1.58028 1.36798 1.20581 1.01869 0.91119 0.99286 1.18593 0.92405 0.99934 0.93063 1.20343 0.98113 1.09808 0.93270 1.20688 0.93679 0.97932 0.96928 1.21197 0.94580 1.09783 0.99187 1.19273 0.85219 0.92517 0.92950 1.83976 1.13010 1.73012 1.38191 1.21319 0.89456 1.46607 0.89366 0.89076 1.25289 0.95466 0.96817 0.98993 1.70042 1.07190 1.44175 1.28429 0.85711 0.78835 0.78927 0.79947 1.19876 1.20269 1.19194 1.19943 0.92617 1.09619 0.97095 1.23000 0.95241 0.89975 0.96955 1.68163 1.13229 1.09092 1.30524 0.91519 0.92323 0.92443 0.89333 0.89199 0.79718 0.74874 0.87649 0.87642 0.87857 0.87389 0.85554 0.92052 0.86800 0.81305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.89 37.16 0.37 -0.69 16 2 C -0.05 -0.47 6.37 -27.88 -0.18 -0.64 16 3 C 0.29 3.46 6.89 -157.19 -1.08 2.38 16 4 N -0.49 -6.71 10.32 -10.58 -0.11 -6.82 16 5 C 0.14 1.92 9.98 -16.99 -0.17 1.75 16 6 C 0.05 0.53 6.46 -83.40 -0.54 -0.01 16 7 N -0.67 -5.94 5.38 -9.68 -0.05 -6.00 16 8 C 0.51 6.42 7.64 -10.99 -0.08 6.34 16 9 O -0.49 -8.55 13.33 5.55 0.07 -8.48 16 10 C -0.09 -1.00 5.83 -29.04 -0.17 -1.17 16 11 C -0.04 -0.67 4.37 -104.64 -0.46 -1.12 16 12 C -0.20 -3.32 9.70 -39.53 -0.38 -3.70 16 13 C -0.07 -1.37 10.04 -39.61 -0.40 -1.76 16 14 C -0.23 -5.02 9.17 -39.40 -0.36 -5.38 16 15 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 16 O -0.18 -5.15 9.76 0.05 0.00 -5.15 16 17 C -0.39 -11.04 9.49 30.88 0.29 -10.74 16 18 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 21 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 C -0.17 -3.64 9.65 -39.39 -0.38 -4.02 16 26 C 0.12 1.14 11.24 -16.99 -0.19 0.95 16 27 N -0.50 -5.71 10.32 -10.58 -0.11 -5.82 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.19 2.68 5.99 -52.49 -0.31 2.37 16 34 H 0.41 1.93 8.80 -40.82 -0.36 1.57 16 35 H 0.11 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.11 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.10 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -35.60 365.58 -8.06 -43.66 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.02 Total: 5.52 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -4.09 Total: -13.35 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.49 Total: -43.38 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.07 Total: -13.63 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.60 -8.06 -43.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089830859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.317 kcal (2) G-P(sol) polarization free energy of solvation -35.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds