Wall clock time and date at job start Tue Mar 31 2020 16:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46833 * 2 1 4 4 N 1.31793 * 119.03342 * 90.00477 * 3 2 1 5 5 C 1.32267 * 120.89244 * 180.02562 * 4 3 2 6 6 C 1.39233 * 119.01269 * 359.97438 * 5 4 3 7 7 N 1.39976 * 120.86740 * 180.02562 * 6 5 4 8 8 C 1.34779 * 120.00375 * 25.71527 * 7 6 5 9 9 O 1.21286 * 119.99612 * 5.67548 * 8 7 6 10 10 C 1.50697 * 120.00072 * 185.67541 * 8 7 6 11 11 C 1.50701 * 109.46827 * 179.97438 * 10 8 7 12 12 C 1.38332 * 119.96284 * 269.97743 * 11 10 8 13 13 C 1.38283 * 120.13620 * 180.02562 * 12 11 10 14 14 C 1.38125 * 120.06644 * 359.68089 * 13 12 11 15 15 C 1.38850 * 119.93233 * 0.59176 * 14 13 12 16 16 O 1.35750 * 120.06988 * 179.69927 * 15 14 13 17 17 C 1.34831 * 117.00023 * 354.46486 * 16 15 14 18 18 H 1.07999 * 119.99902 * 5.01666 * 17 16 15 19 19 C 1.38651 * 120.00158 * 185.01884 * 17 16 15 20 20 N 1.31561 * 119.99888 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00064 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47292 * 89.99970 * 21 19 17 23 23 H 1.48508 * 109.47082 * 209.99627 * 21 19 17 24 24 H 1.48500 * 109.46905 * 329.99376 * 21 19 17 25 25 C 1.38079 * 119.96910 * 90.00060 * 11 10 8 26 26 C 1.39238 * 118.26072 * 0.28170 * 6 5 4 27 27 N 1.31794 * 119.03764 * 270.02612 * 3 2 1 28 28 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47262 * 299.99691 * 1 2 3 30 30 H 1.08998 * 109.47679 * 59.99601 * 1 2 3 31 31 H 1.09003 * 109.46680 * 240.01002 * 2 1 3 32 32 H 1.08994 * 109.47201 * 120.00360 * 2 1 3 33 33 H 1.08002 * 120.49298 * 179.97438 * 5 4 3 34 34 H 0.97010 * 120.00101 * 205.70442 * 7 6 5 35 35 H 1.08999 * 109.46942 * 60.00152 * 10 8 7 36 36 H 1.08991 * 109.47123 * 299.99648 * 10 8 7 37 37 H 1.07997 * 119.92879 * 0.02603 * 12 11 10 38 38 H 1.07993 * 119.96272 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.02975 * 180.31962 * 14 13 12 40 40 H 0.97002 * 119.99889 * 180.02562 * 20 19 17 41 41 H 1.08000 * 120.02875 * 359.97438 * 25 11 10 42 42 H 1.08002 * 120.48830 * 179.69653 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2456 2.0239 1.1523 5 6 2.6857 3.2705 1.1952 6 6 2.9237 3.9441 0.0002 7 7 3.3902 5.2638 0.0003 8 6 4.0924 5.7304 1.0518 9 8 4.4087 4.9800 1.9507 10 6 4.4845 7.1842 1.1108 11 6 5.2559 7.4454 2.3788 12 6 4.5864 7.8184 3.5304 13 6 5.2908 8.0594 4.6957 14 6 6.6650 7.9220 4.7147 15 6 7.3405 7.5532 3.5589 16 8 8.6916 7.4232 3.5729 17 6 9.3289 7.7768 4.7072 18 1 8.7601 8.0667 5.5783 19 6 10.7146 7.7684 4.7554 20 7 11.4075 7.4149 3.6944 21 14 11.5975 8.2576 6.3272 22 1 11.8085 7.0543 7.1715 23 1 12.9114 8.8618 5.9894 24 1 10.7746 9.2456 7.0701 25 6 6.6303 7.3126 2.3897 26 6 2.6803 3.2724 -1.1950 27 7 2.2450 2.0242 -1.1523 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.8579 3.7586 2.1431 34 1 3.2083 5.8427 -0.7567 35 1 3.5874 7.8032 1.0977 36 1 5.1067 7.4279 0.2498 37 1 3.5115 7.9215 3.5193 38 1 4.7653 8.3509 5.5930 39 1 7.2140 8.1053 5.6265 40 1 12.3769 7.4086 3.7283 41 1 7.1523 7.0214 1.4902 42 1 2.8480 3.7623 -2.1428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089830859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:08 Heat of formation + Delta-G solvation = -15.316726 kcal Electronic energy + Delta-G solvation = -25868.093673 eV Core-core repulsion = 22006.054765 eV Total energy + Delta-G solvation = -3862.038909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.48187 -41.14446 -40.45932 -38.28137 -36.65825 -34.80991 -34.57635 -34.33929 -33.51201 -31.07114 -30.58553 -28.43514 -27.27104 -25.99184 -25.63091 -23.43065 -23.15318 -22.57889 -21.70063 -19.72820 -19.24651 -18.79761 -18.39646 -17.81268 -17.57842 -16.82715 -16.60472 -16.14351 -16.11802 -15.85026 -15.57110 -15.24926 -15.06198 -14.96746 -14.71199 -14.50598 -14.34740 -14.02804 -13.61966 -13.49373 -12.99002 -12.94516 -12.81419 -12.48520 -12.42403 -12.23803 -12.22664 -12.12451 -12.11080 -12.04524 -11.89782 -11.21680 -11.14854 -10.81244 -10.30250 -9.65403 -9.45823 -8.98263 -8.48080 -6.16401 -0.27678 -0.01100 0.49288 0.75681 1.33122 1.42536 1.46773 1.50878 1.83387 2.16717 2.67702 2.82604 2.97137 3.14633 3.15282 3.41143 3.44256 3.64095 3.80842 4.00150 4.10731 4.15782 4.29011 4.32045 4.38387 4.42997 4.56833 4.61005 4.66085 4.71254 4.74476 4.98720 5.01262 5.06394 5.11699 5.12397 5.29269 5.30752 5.45708 5.64603 5.72161 5.74929 5.90094 6.02101 6.19883 6.29581 6.96703 6.98277 7.04759 7.78366 8.75358 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.002213 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.750974 B =12647.130299 C =13109.379965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.054 4.054 3 C 0.278 3.722 4 N -0.520 5.520 5 C 0.119 3.881 6 C 0.045 3.955 7 N -0.642 5.642 8 C 0.516 3.484 9 O -0.551 6.551 10 C -0.084 4.084 11 C -0.029 4.029 12 C -0.177 4.177 13 C -0.076 4.076 14 C -0.246 4.246 15 C 0.109 3.891 16 O -0.235 6.235 17 C -0.413 4.413 18 H 0.100 0.900 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.019 2.981 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.252 1.252 25 C -0.190 4.190 26 C 0.131 3.869 27 N -0.507 5.507 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.168 0.832 34 H 0.439 0.561 35 H 0.156 0.844 36 H 0.133 0.867 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.115 0.885 40 H 0.272 0.728 41 H 0.109 0.891 42 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.520 -4.136 -11.060 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 C 0.010 3.990 4 N -0.234 5.234 5 C -0.049 4.049 6 C -0.055 4.055 7 N -0.290 5.290 8 C 0.306 3.694 9 O -0.427 6.427 10 C -0.123 4.123 11 C -0.030 4.030 12 C -0.196 4.196 13 C -0.094 4.094 14 C -0.265 4.265 15 C 0.059 3.941 16 O -0.142 6.142 17 C -0.489 4.489 18 H 0.117 0.883 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.838 3.162 22 H -0.190 1.190 23 H -0.194 1.194 24 H -0.176 1.176 25 C -0.210 4.210 26 C -0.039 4.039 27 N -0.220 5.220 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.185 0.815 34 H 0.280 0.720 35 H 0.174 0.826 36 H 0.151 0.849 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.133 0.867 40 H 0.081 0.919 41 H 0.127 0.873 42 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -23.242 -5.622 -10.634 26.170 hybrid contribution 1.428 1.229 0.614 1.981 sum -21.814 -4.393 -10.020 24.404 Atomic orbital electron populations 1.21644 0.92508 1.03583 1.01644 1.20434 0.97585 0.86611 1.04682 1.23714 0.93207 0.98744 0.83306 1.68299 1.13695 1.10144 1.31278 1.23572 0.91773 0.90304 0.99261 1.19656 1.00732 0.88568 0.96592 1.43248 1.53185 1.09869 1.22730 1.21377 0.75830 0.91400 0.80808 1.90771 1.53392 1.59375 1.39141 1.20711 1.03596 0.90922 0.97071 1.19165 0.90986 0.96949 0.95903 1.21008 1.00396 1.06013 0.92133 1.21141 0.92168 0.96817 0.99232 1.21304 0.96408 1.10741 0.98088 1.19922 0.84327 0.94608 0.95277 1.83933 1.15323 1.76013 1.38906 1.21804 0.90289 1.46920 0.89900 0.88287 1.26604 0.95976 0.96624 1.03020 1.70188 1.07521 1.47027 1.31270 0.84584 0.77511 0.78994 0.75093 1.19045 1.19369 1.17558 1.20259 0.94617 1.10106 0.95997 1.23695 0.92881 0.89268 0.98025 1.68271 1.13674 1.09953 1.30100 0.89400 0.93452 0.92544 0.88152 0.89292 0.81550 0.71962 0.82647 0.84889 0.83154 0.83875 0.86716 0.91877 0.87337 0.76999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.89 71.98 0.71 -1.11 16 2 C -0.05 -0.91 6.37 29.85 0.19 -0.72 16 3 C 0.28 6.43 6.89 138.75 0.96 7.39 16 4 N -0.52 -14.22 10.32 -187.38 -1.93 -16.15 16 5 C 0.12 3.17 9.98 84.87 0.85 4.01 16 6 C 0.05 0.89 6.46 38.32 0.25 1.14 16 7 N -0.64 -9.14 5.38 -302.91 -1.63 -10.77 16 8 C 0.52 11.44 7.64 87.66 0.67 12.11 16 9 O -0.55 -18.74 13.33 -3.05 -0.04 -18.78 16 10 C -0.08 -1.51 5.83 29.10 0.17 -1.34 16 11 C -0.03 -0.92 4.37 -19.88 -0.09 -1.01 16 12 C -0.18 -5.33 9.70 22.30 0.22 -5.11 16 13 C -0.08 -2.64 10.04 22.25 0.22 -2.42 16 14 C -0.25 -11.12 9.17 22.39 0.21 -10.91 16 15 C 0.11 5.59 6.65 22.57 0.15 5.74 16 16 O -0.23 -14.59 9.76 -22.74 -0.22 -14.81 16 17 C -0.41 -24.79 9.49 67.92 0.64 -24.14 16 18 H 0.10 5.48 5.20 -2.91 -0.02 5.47 16 19 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 20 N -0.92 -57.76 13.67 21.61 0.30 -57.47 16 21 Si 1.02 43.94 29.55 68.60 2.03 45.97 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 25 C -0.19 -8.14 9.65 22.39 0.22 -7.93 16 26 C 0.13 2.13 11.24 84.87 0.95 3.09 16 27 N -0.51 -10.61 10.32 -187.38 -1.93 -12.54 16 28 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.17 4.99 5.99 -2.91 -0.02 4.97 16 34 H 0.44 1.83 8.80 -92.70 -0.82 1.01 16 35 H 0.16 1.34 8.08 -2.39 -0.02 1.32 16 36 H 0.13 1.77 8.08 -2.39 -0.02 1.76 16 37 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 38 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 42 H 0.21 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -87.47 365.58 3.60 -83.87 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.26 Total: 22.88 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 6.78 Total: -22.21 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -5.20 Total: -96.93 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.26 Total: -33.58 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -87.47 3.60 -83.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089830859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.557 kcal (2) G-P(sol) polarization free energy of solvation -87.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds