Wall clock time and date at job start Tue Mar 31 2020 14:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38884 * 120.74947 * 2 1 4 4 C 1.38021 * 119.32979 * 180.02562 * 3 2 1 5 5 N 1.31976 * 120.85961 * 359.74133 * 4 3 2 6 6 C 1.32392 * 121.61704 * 0.52484 * 5 4 3 7 7 N 1.39003 * 119.70341 * 179.75449 * 6 5 4 8 8 N 1.40098 * 119.99813 * 359.72505 * 7 6 5 9 9 C 1.34783 * 119.99862 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99976 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00059 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 C 1.38304 * 120.74608 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47580 * 269.98342 * 1 2 3 29 29 H 1.09003 * 109.46903 * 29.97971 * 1 2 3 30 30 H 1.08994 * 109.47394 * 149.97683 * 1 2 3 31 31 H 1.08000 * 120.33301 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.56650 * 179.97438 * 4 3 2 33 33 H 0.97001 * 119.99860 * 179.72873 * 7 6 5 34 34 H 0.97001 * 120.00327 * 0.02562 * 8 7 6 35 35 H 1.09004 * 109.46756 * 60.00007 * 11 9 8 36 36 H 1.08998 * 109.46908 * 300.00650 * 11 9 8 37 37 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 38 38 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 40 40 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 42 42 H 1.07993 * 120.44934 * 359.95752 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2170 1.1936 0.0000 4 6 3.5968 1.1594 -0.0005 5 7 4.2455 0.0101 0.0041 6 6 3.6048 -1.1485 -0.0010 7 7 4.3281 -2.3355 -0.0010 8 7 5.7287 -2.3024 -0.0015 9 6 6.4301 -3.4534 -0.0010 10 8 5.8486 -4.5178 -0.0006 11 6 7.9366 -3.4177 -0.0022 12 6 8.4724 -4.8262 -0.0019 13 6 8.7185 -5.4716 1.1966 14 6 9.2096 -6.7643 1.2009 15 6 9.4498 -7.4173 0.0078 16 6 9.2093 -6.7702 -1.1969 17 8 9.4501 -7.4072 -2.3712 18 6 10.0349 -8.6200 -2.3009 19 1 10.2156 -9.0775 -1.3395 20 6 10.4043 -9.2799 -3.4631 21 7 10.1847 -8.7225 -4.6343 22 14 11.2153 -10.9599 -3.3657 23 1 11.3498 -11.3629 -1.9427 24 1 10.3799 -11.9552 -4.0847 25 1 12.5603 -10.8975 -3.9922 26 6 8.7167 -5.4714 -1.1980 27 6 2.2140 -1.1886 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6948 2.1389 -0.0004 32 1 4.1529 2.0853 -0.0010 33 1 3.8631 -3.1868 -0.0007 34 1 6.1937 -1.4511 -0.0015 35 1 8.2883 -2.8946 0.8872 36 1 8.2870 -2.8961 -0.8928 37 1 8.5266 -4.9649 2.1308 38 1 9.4011 -7.2653 2.1382 39 1 9.8286 -8.4287 0.0118 40 1 10.4435 -9.1840 -5.4472 41 1 8.5247 -4.9668 -2.1334 42 1 1.6937 -2.1349 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089850587.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:06 Heat of formation + Delta-G solvation = 34.373379 kcal Electronic energy + Delta-G solvation = -25461.966367 eV Core-core repulsion = 21602.082183 eV Total energy + Delta-G solvation = -3859.884184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.67501 -39.76881 -38.77856 -36.68123 -36.00293 -34.03808 -32.78236 -32.27605 -31.77838 -29.34375 -28.86658 -28.13870 -26.70003 -25.19376 -23.72489 -22.22361 -21.63097 -21.34675 -20.42472 -18.30821 -17.79538 -17.51980 -16.87226 -16.42836 -16.06350 -15.79687 -15.60148 -15.02663 -14.79043 -14.48528 -14.39066 -14.28642 -13.97485 -13.57925 -13.44586 -13.36842 -13.04936 -12.88038 -12.64657 -12.41417 -12.06240 -11.99364 -11.70377 -11.48853 -11.26027 -10.83194 -10.75788 -10.59398 -10.40471 -10.02410 -9.81751 -9.78334 -9.61931 -9.30159 -8.80662 -8.05330 -7.65679 -7.18615 -6.40656 -3.99566 0.95572 1.09152 1.70346 2.24489 2.43602 2.65045 3.15043 3.16251 3.21957 3.58402 3.64812 3.99883 4.32948 4.41691 4.53506 4.75077 4.84153 4.88665 4.96319 5.09100 5.13339 5.15258 5.20630 5.29346 5.39155 5.49374 5.56833 5.65617 5.67687 5.77363 5.96141 6.07196 6.20192 6.24835 6.36934 6.60158 6.70282 6.94652 7.06127 7.11105 7.28510 7.39603 7.42285 7.47521 7.84255 7.85699 8.04513 8.32204 9.05201 9.76220 10.77699 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.001963 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.164813 B =14263.657074 C =14783.538910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.005 3.995 3 C -0.240 4.240 4 C 0.157 3.843 5 N -0.554 5.554 6 C 0.410 3.590 7 N -0.518 5.518 8 N -0.524 5.524 9 C 0.512 3.488 10 O -0.523 6.523 11 C -0.081 4.081 12 C -0.035 4.035 13 C -0.195 4.195 14 C -0.075 4.075 15 C -0.229 4.229 16 C 0.154 3.846 17 O -0.180 6.180 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.172 4.172 27 C -0.235 4.235 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.157 0.843 33 H 0.441 0.559 34 H 0.430 0.570 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.269 0.731 41 H 0.115 0.885 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.058 19.609 10.764 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.003 4.003 3 C -0.263 4.263 4 C 0.000 4.000 5 N -0.274 5.274 6 C 0.174 3.826 7 N -0.246 5.246 8 N -0.273 5.273 9 C 0.298 3.702 10 O -0.396 6.396 11 C -0.122 4.122 12 C -0.036 4.036 13 C -0.214 4.214 14 C -0.093 4.093 15 C -0.248 4.248 16 C 0.100 3.900 17 O -0.083 6.083 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.192 4.192 27 C -0.261 4.261 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.174 0.826 33 H 0.285 0.715 34 H 0.272 0.728 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.364 18.771 10.278 25.231 hybrid contribution -0.485 -0.792 0.062 0.931 sum -13.850 17.979 10.340 24.940 Atomic orbital electron populations 1.20844 0.90240 1.03406 1.02946 1.20000 0.96372 0.92156 0.91785 1.21702 0.95365 0.98444 1.10763 1.22352 0.91701 0.94562 0.91411 1.67039 1.40833 0.97404 1.22101 1.18203 0.87566 0.85598 0.91248 1.43245 0.94327 1.06235 1.80811 1.45019 0.94130 1.10697 1.77414 1.21128 0.90091 0.82458 0.76476 1.90776 1.71134 1.29286 1.48367 1.20481 0.88969 0.97529 1.05199 1.18587 0.98779 0.92997 0.93219 1.20359 1.08664 0.96323 0.96024 1.20679 0.97540 0.94292 0.96835 1.21188 1.09785 1.01717 0.92116 1.19272 0.92793 0.91282 0.86605 1.83978 1.68411 1.31213 1.24732 1.21368 1.38506 0.92083 0.94692 0.89055 1.25283 0.97264 0.99853 0.94214 1.70049 1.44395 1.38062 0.97417 0.85649 0.78701 0.80293 0.78782 1.19118 1.20205 1.20173 1.19957 1.08287 0.93731 0.97194 1.21016 0.91867 0.99657 1.13605 0.90383 0.90887 0.90945 0.85105 0.82591 0.71452 0.72848 0.87820 0.87673 0.87847 0.87430 0.85583 0.92149 0.86735 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.06 36.00 0.36 -0.21 16 2 C 0.00 0.04 5.91 -104.36 -0.62 -0.58 16 3 C -0.24 -1.72 9.81 -39.42 -0.39 -2.11 16 4 C 0.16 1.28 11.17 -17.57 -0.20 1.08 16 5 N -0.55 -5.86 9.37 -12.44 -0.12 -5.98 16 6 C 0.41 4.45 7.59 -155.02 -1.18 3.28 16 7 N -0.52 -6.10 6.42 31.13 0.20 -5.90 16 8 N -0.52 -6.26 6.29 31.22 0.20 -6.07 16 9 C 0.51 7.48 7.94 -10.98 -0.09 7.40 16 10 O -0.52 -9.97 15.87 5.55 0.09 -9.89 16 11 C -0.08 -1.06 5.83 -29.04 -0.17 -1.22 16 12 C -0.03 -0.64 4.37 -104.65 -0.46 -1.09 16 13 C -0.19 -3.51 9.70 -39.53 -0.38 -3.89 16 14 C -0.08 -1.45 10.04 -39.61 -0.40 -1.85 16 15 C -0.23 -5.18 9.17 -39.40 -0.36 -5.55 16 16 C 0.15 3.87 6.65 -39.11 -0.26 3.61 16 17 O -0.18 -5.28 9.76 0.05 0.00 -5.28 16 18 C -0.39 -11.17 9.49 30.89 0.29 -10.88 16 19 H 0.09 2.43 5.21 -52.49 -0.27 2.15 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.82 13.67 55.48 0.76 -25.07 16 22 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 26 C -0.17 -3.78 9.65 -39.39 -0.38 -4.16 16 27 C -0.24 -2.12 9.64 -39.22 -0.38 -2.49 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 30 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 31 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.44 5.15 7.99 -182.60 -1.46 3.69 16 34 H 0.43 4.29 7.95 -182.60 -1.45 2.84 16 35 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 36 H 0.11 1.16 8.08 -51.93 -0.42 0.74 16 37 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.13 2.84 5.64 -52.48 -0.30 2.55 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.11 2.44 8.06 -52.49 -0.42 2.01 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 368.72 15.07 5.56 5.56 Total: -1.00 -35.77 368.72 -10.29 -46.06 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.26 Total: 8.34 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -4.69 Total: -17.71 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 1.04 Total: -43.01 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.09 Total: -15.16 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.77 -10.29 -46.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089850587.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.430 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds