Wall clock time and date at job start Tue Mar 31 2020 14:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38884 * 120.74947 * 2 1 4 4 C 1.38021 * 119.32979 * 180.02562 * 3 2 1 5 5 N 1.31976 * 120.85961 * 359.74133 * 4 3 2 6 6 C 1.32392 * 121.61704 * 0.52484 * 5 4 3 7 7 N 1.39003 * 119.70341 * 179.75449 * 6 5 4 8 8 N 1.40098 * 119.99813 * 359.72505 * 7 6 5 9 9 C 1.34783 * 119.99862 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99976 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00059 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 C 1.38304 * 120.74608 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47580 * 269.98342 * 1 2 3 29 29 H 1.09003 * 109.46903 * 29.97971 * 1 2 3 30 30 H 1.08994 * 109.47394 * 149.97683 * 1 2 3 31 31 H 1.08000 * 120.33301 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.56650 * 179.97438 * 4 3 2 33 33 H 0.97001 * 119.99860 * 179.72873 * 7 6 5 34 34 H 0.97001 * 120.00327 * 0.02562 * 8 7 6 35 35 H 1.09004 * 109.46756 * 60.00007 * 11 9 8 36 36 H 1.08998 * 109.46908 * 300.00650 * 11 9 8 37 37 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 38 38 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 40 40 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 42 42 H 1.07993 * 120.44934 * 359.95752 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2170 1.1936 0.0000 4 6 3.5968 1.1594 -0.0005 5 7 4.2455 0.0101 0.0041 6 6 3.6048 -1.1485 -0.0010 7 7 4.3281 -2.3355 -0.0010 8 7 5.7287 -2.3024 -0.0015 9 6 6.4301 -3.4534 -0.0010 10 8 5.8486 -4.5178 -0.0006 11 6 7.9366 -3.4177 -0.0022 12 6 8.4724 -4.8262 -0.0019 13 6 8.7185 -5.4716 1.1966 14 6 9.2096 -6.7643 1.2009 15 6 9.4498 -7.4173 0.0078 16 6 9.2093 -6.7702 -1.1969 17 8 9.4501 -7.4072 -2.3712 18 6 10.0349 -8.6200 -2.3009 19 1 10.2156 -9.0775 -1.3395 20 6 10.4043 -9.2799 -3.4631 21 7 10.1847 -8.7225 -4.6343 22 14 11.2153 -10.9599 -3.3657 23 1 11.3498 -11.3629 -1.9427 24 1 10.3799 -11.9552 -4.0847 25 1 12.5603 -10.8975 -3.9922 26 6 8.7167 -5.4714 -1.1980 27 6 2.2140 -1.1886 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6948 2.1389 -0.0004 32 1 4.1529 2.0853 -0.0010 33 1 3.8631 -3.1868 -0.0007 34 1 6.1937 -1.4511 -0.0015 35 1 8.2883 -2.8946 0.8872 36 1 8.2870 -2.8961 -0.8928 37 1 8.5266 -4.9649 2.1308 38 1 9.4011 -7.2653 2.1382 39 1 9.8286 -8.4287 0.0118 40 1 10.4435 -9.1840 -5.4472 41 1 8.5247 -4.9668 -2.1334 42 1 1.6937 -2.1349 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089850587.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:05 Heat of formation + Delta-G solvation = 10.713940 kcal Electronic energy + Delta-G solvation = -25462.992318 eV Core-core repulsion = 21602.082183 eV Total energy + Delta-G solvation = -3860.910134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.48784 -40.98061 -40.35091 -38.29125 -37.07337 -34.65610 -34.35954 -33.84660 -32.97328 -30.92250 -29.89139 -28.73401 -27.97393 -27.17961 -24.38460 -23.43730 -23.10761 -22.39901 -21.78941 -19.61347 -19.09011 -18.76246 -18.57659 -17.20179 -16.88507 -16.73178 -16.68373 -16.57023 -16.13278 -16.07423 -15.53445 -15.42865 -15.14993 -15.08329 -14.85575 -14.35968 -14.02491 -13.99630 -13.61442 -13.57816 -13.30399 -12.99340 -12.99166 -12.60747 -12.51910 -12.48150 -12.39245 -12.22916 -12.08633 -11.24660 -11.19773 -10.81456 -10.51114 -10.45005 -10.39624 -9.66162 -8.98510 -8.49126 -8.47468 -6.15918 0.32452 0.42954 0.43352 0.74512 1.01905 1.33704 1.42777 1.52587 1.54599 2.17194 2.73589 2.90047 2.92834 3.16767 3.42397 3.66335 3.78071 3.88709 4.01437 4.10277 4.16804 4.31478 4.32698 4.41208 4.45673 4.57658 4.62385 4.73908 4.75435 4.82996 4.85276 5.00982 5.05382 5.12892 5.22592 5.29741 5.46172 5.57019 5.64372 5.72217 5.74480 5.87789 6.02614 6.17895 6.23239 6.52504 6.97166 7.06444 7.34357 7.78966 8.76328 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.001963 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.164813 B =14263.657074 C =14783.538910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.001 4.001 3 C -0.233 4.233 4 C 0.143 3.857 5 N -0.572 5.572 6 C 0.387 3.613 7 N -0.530 5.530 8 N -0.508 5.508 9 C 0.513 3.487 10 O -0.577 6.577 11 C -0.078 4.078 12 C -0.026 4.026 13 C -0.177 4.177 14 C -0.074 4.074 15 C -0.244 4.244 16 C 0.110 3.890 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.026 4.026 21 N -0.922 5.922 22 Si 1.021 2.979 23 H -0.251 1.251 24 H -0.269 1.269 25 H -0.266 1.266 26 C -0.190 4.190 27 C -0.245 4.245 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.159 0.841 32 H 0.183 0.817 33 H 0.438 0.562 34 H 0.440 0.560 35 H 0.151 0.849 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.118 0.882 40 H 0.272 0.728 41 H 0.107 0.893 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.844 21.871 13.580 29.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.009 4.009 3 C -0.255 4.255 4 C -0.013 4.013 5 N -0.292 5.292 6 C 0.153 3.847 7 N -0.260 5.260 8 N -0.255 5.255 9 C 0.301 3.699 10 O -0.454 6.454 11 C -0.118 4.118 12 C -0.027 4.027 13 C -0.196 4.196 14 C -0.092 4.092 15 C -0.264 4.264 16 C 0.060 3.940 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.223 4.223 21 N -0.561 5.561 22 Si 0.840 3.160 23 H -0.175 1.175 24 H -0.194 1.194 25 H -0.191 1.191 26 C -0.210 4.210 27 C -0.271 4.271 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.177 0.823 32 H 0.200 0.800 33 H 0.282 0.718 34 H 0.284 0.716 35 H 0.168 0.832 36 H 0.145 0.855 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.135 0.865 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.174 21.144 13.148 28.651 hybrid contribution -0.450 -1.111 -0.579 1.331 sum -14.624 20.033 12.569 27.806 Atomic orbital electron populations 1.20906 0.88220 1.04289 1.03839 1.20414 0.97908 0.91804 0.90823 1.22084 0.95205 0.99488 1.08765 1.22902 0.92636 0.94739 0.91045 1.67023 1.41666 0.97919 1.22630 1.18433 0.88194 0.85485 0.92628 1.43347 0.93907 1.06646 1.82093 1.44795 0.94682 1.10427 1.75586 1.21248 0.90587 0.82196 0.75905 1.90765 1.72155 1.31162 1.51358 1.20588 0.87852 0.94709 1.08653 1.19089 0.96592 0.95213 0.91829 1.20993 1.05270 0.95669 0.97649 1.21136 0.96255 0.94942 0.96874 1.21305 1.10561 1.01720 0.92765 1.19880 0.94669 0.92780 0.86633 1.83937 1.70957 1.32135 1.27144 1.21868 1.38932 0.92552 0.95552 0.88184 1.26627 0.97735 1.04466 0.93453 1.70196 1.46949 1.40532 0.98396 0.84504 0.77644 0.74269 0.79594 1.17474 1.19435 1.19091 1.20233 1.08827 0.93112 0.98799 1.21250 0.91409 1.00833 1.13619 0.89342 0.89416 0.90719 0.82333 0.79972 0.71842 0.71621 0.83154 0.85453 0.83350 0.83646 0.86460 0.91872 0.87482 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.06 71.23 0.72 -0.12 16 2 C 0.00 -0.02 5.91 -19.70 -0.12 -0.13 16 3 C -0.23 -2.70 9.81 22.37 0.22 -2.48 16 4 C 0.14 2.00 11.17 84.62 0.95 2.95 16 5 N -0.57 -11.26 9.37 -193.26 -1.81 -13.07 16 6 C 0.39 8.10 7.59 133.07 1.01 9.11 16 7 N -0.53 -12.29 6.42 -55.43 -0.36 -12.64 16 8 N -0.51 -11.44 6.29 -173.52 -1.09 -12.53 16 9 C 0.51 14.26 7.94 87.66 0.70 14.95 16 10 O -0.58 -21.96 15.87 -3.04 -0.05 -22.01 16 11 C -0.08 -1.80 5.83 29.10 0.17 -1.63 16 12 C -0.03 -0.92 4.37 -19.88 -0.09 -1.01 16 13 C -0.18 -5.79 9.70 22.30 0.22 -5.57 16 14 C -0.07 -2.70 10.04 22.25 0.22 -2.48 16 15 C -0.24 -11.31 9.17 22.39 0.21 -11.10 16 16 C 0.11 5.84 6.65 22.58 0.15 5.99 16 17 O -0.23 -14.84 9.76 -22.74 -0.22 -15.06 16 18 C -0.41 -25.06 9.49 67.92 0.64 -24.41 16 19 H 0.10 5.60 5.21 -2.91 -0.02 5.59 16 20 C -0.03 -1.52 5.49 84.83 0.47 -1.05 16 21 N -0.92 -58.36 13.67 21.61 0.30 -58.06 16 22 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 23 H -0.25 -10.09 7.11 99.48 0.71 -9.39 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 26 C -0.19 -8.61 9.65 22.39 0.22 -8.40 16 27 C -0.25 -4.18 9.64 22.50 0.22 -3.96 16 28 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.09 0.39 8.10 -2.39 -0.02 0.37 16 30 H 0.07 0.52 8.10 -2.39 -0.02 0.50 16 31 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 32 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.44 10.44 7.99 -213.32 -1.71 8.74 16 34 H 0.44 7.88 7.95 -213.32 -1.70 6.19 16 35 H 0.15 2.14 8.09 -2.38 -0.02 2.12 16 36 H 0.13 2.46 8.08 -2.39 -0.02 2.44 16 37 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 38 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 39 H 0.12 5.50 5.64 -2.91 -0.02 5.48 16 40 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 41 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 42 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -85.33 368.72 2.37 -82.96 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: -2.32 Total: 33.41 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 5.89 Total: -29.35 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -2.96 Total: -96.30 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -0.27 Total: -37.07 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -85.33 2.37 -82.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089850587.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.673 kcal (2) G-P(sol) polarization free energy of solvation -85.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds