Wall clock time and date at job start Tue Mar 31 2020 15:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38681 * 120.98946 * 2 1 4 4 C 1.39217 * 117.92767 * 180.02562 * 3 2 1 5 5 O 1.35692 * 120.14192 * 180.27409 * 4 3 2 6 6 C 1.42907 * 117.00278 * 179.72194 * 5 4 3 7 7 C 1.50699 * 109.46980 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00367 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99897 * 180.02562 * 7 6 5 10 10 C 1.39240 * 120.00288 * 175.70893 * 9 7 6 11 11 C 1.39478 * 119.83393 * 215.01475 * 10 9 7 12 12 C 1.36378 * 120.16816 * 179.76154 * 11 10 9 13 13 C 1.40865 * 119.82525 * 0.50780 * 12 11 10 14 14 C 1.41160 * 120.15926 * 179.72135 * 13 12 11 15 15 H 1.08003 * 119.99565 * 214.80393 * 14 13 12 16 16 C 1.39893 * 120.00331 * 34.80860 * 14 13 12 17 17 N 1.30873 * 120.00271 * 355.55300 * 16 14 13 18 18 Si 1.86802 * 120.00277 * 175.55751 * 16 14 13 19 19 H 1.48502 * 109.47084 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47071 * 119.99583 * 18 16 14 21 21 H 1.48503 * 109.47051 * 239.99691 * 18 16 14 22 22 C 1.40864 * 119.67638 * 359.74378 * 13 12 11 23 23 C 1.36376 * 119.82449 * 0.02562 * 22 13 12 24 24 N 1.32367 * 119.72144 * 0.02562 * 4 3 2 25 25 N 1.28346 * 122.09866 * 359.97438 * 24 4 3 26 26 C 1.31846 * 122.25771 * 0.02562 * 25 24 4 27 27 C 1.50696 * 120.00964 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.47064 * 269.97406 * 1 2 3 29 29 H 1.08995 * 109.47325 * 29.97489 * 1 2 3 30 30 H 1.09000 * 109.46863 * 149.97855 * 1 2 3 31 31 H 1.08005 * 121.03327 * 0.04428 * 3 2 1 32 32 H 1.08993 * 109.47434 * 300.00624 * 6 5 4 33 33 H 1.09002 * 109.46654 * 60.00728 * 6 5 4 34 34 H 0.97008 * 120.00111 * 355.70749 * 9 7 6 35 35 H 1.08004 * 119.91644 * 0.02562 * 11 10 9 36 36 H 1.08001 * 120.08817 * 180.25181 * 12 11 10 37 37 H 0.96995 * 120.00856 * 180.02562 * 17 16 14 38 38 H 1.07998 * 120.08825 * 179.97438 * 22 13 12 39 39 H 1.08003 * 119.91195 * 179.97438 * 23 22 13 40 40 H 1.09003 * 109.47548 * 90.00238 * 27 26 25 41 41 H 1.09002 * 109.46684 * 209.99610 * 27 26 25 42 42 H 1.08994 * 109.47938 * 329.99663 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2210 1.1889 0.0000 4 6 3.6112 1.1145 -0.0006 5 8 4.3543 2.2499 0.0050 6 6 5.7750 2.0955 0.0103 7 6 6.4278 3.4537 0.0167 8 8 5.7439 4.4553 0.0163 9 7 7.7717 3.5554 0.0218 10 6 8.3755 4.8072 -0.0626 11 6 9.5757 4.9532 -0.7580 12 6 10.1705 6.1771 -0.8490 13 6 9.5752 7.2932 -0.2293 14 6 10.1879 8.5621 -0.3140 15 1 10.1267 9.2479 0.5181 16 6 10.8742 8.9313 -1.4758 17 7 11.0232 8.0698 -2.4496 18 14 11.5782 10.6541 -1.6371 19 1 11.2757 11.4296 -0.4074 20 1 13.0494 10.5723 -1.8219 21 1 10.9686 11.3300 -2.8106 22 6 8.3658 7.1368 0.4758 23 6 7.7804 5.9076 0.5541 24 7 4.2051 -0.0685 -0.0016 25 7 3.5394 -1.1658 -0.0016 26 6 2.2212 -1.1892 -0.0011 27 6 1.4907 -2.5073 -0.0006 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.7143 2.1427 0.0007 32 1 6.0772 1.5432 0.9000 33 1 6.0841 1.5476 -0.8799 34 1 8.3183 2.7564 0.0842 35 1 10.0329 4.0957 -1.2293 36 1 11.0977 6.2894 -1.3913 37 1 11.4994 8.3256 -3.2550 38 1 7.9038 7.9880 0.9538 39 1 6.8533 5.7860 1.0947 40 1 1.3149 -2.8249 1.0272 41 1 0.5360 -2.3937 -0.5140 42 1 2.0927 -3.2566 -0.5145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107080678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:52 Heat of formation + Delta-G solvation = 7.294084 kcal Electronic energy + Delta-G solvation = -25591.972654 eV Core-core repulsion = 21730.914223 eV Total energy + Delta-G solvation = -3861.058430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.60568 -39.92804 -38.59543 -37.13856 -35.21382 -34.48696 -33.12837 -32.95026 -29.98845 -29.56297 -28.94632 -28.19381 -27.71404 -24.83326 -23.71321 -22.68930 -21.69147 -20.88212 -19.81760 -18.73839 -18.01910 -17.34403 -16.86154 -16.75762 -16.12778 -15.87834 -15.45607 -15.17346 -14.57318 -14.34645 -14.05787 -13.93142 -13.73920 -13.53078 -13.25464 -13.03259 -13.00200 -12.83069 -12.64228 -12.40921 -12.15290 -11.75965 -11.56722 -11.49128 -11.39659 -11.17647 -10.97212 -10.75437 -10.14395 -10.05280 -9.90037 -9.51457 -9.48651 -9.22331 -9.17309 -8.92465 -7.57340 -6.90635 -6.63817 -4.36573 0.41787 0.69404 2.30937 2.48273 2.95535 3.06835 3.09365 3.14690 3.18546 3.28533 3.64039 3.80204 3.97013 3.99907 4.19794 4.38942 4.48114 4.67503 4.82387 4.91506 4.96776 5.04117 5.06669 5.09591 5.16106 5.31019 5.35002 5.45657 5.62909 5.72278 5.86636 6.16970 6.41031 6.67661 6.73959 6.90240 7.04143 7.16456 7.26991 7.61401 7.69087 7.82432 8.03999 8.19096 8.28904 8.38738 8.57487 8.66263 8.90823 8.96809 10.27297 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.038626 B = 0.001859 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.733613 B =15057.834601 C =15390.095477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.051 4.051 3 C -0.134 4.134 4 C 0.268 3.732 5 O -0.270 6.270 6 C 0.052 3.948 7 C 0.499 3.501 8 O -0.511 6.511 9 N -0.644 5.644 10 C 0.001 3.999 11 C -0.118 4.118 12 C -0.141 4.141 13 C 0.100 3.900 14 C -0.459 4.459 15 H 0.077 0.923 16 C 0.069 3.931 17 N -0.811 5.811 18 Si 0.916 3.084 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.205 4.205 23 C -0.085 4.085 24 N -0.305 5.305 25 N -0.203 5.203 26 C 0.032 3.968 27 C -0.097 4.097 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.399 0.601 35 H 0.093 0.907 36 H 0.133 0.867 37 H 0.278 0.722 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.339 -18.287 3.159 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.062 4.062 3 C -0.164 4.164 4 C 0.083 3.917 5 O -0.172 6.172 6 C -0.027 4.027 7 C 0.284 3.716 8 O -0.386 6.386 9 N -0.289 5.289 10 C -0.091 4.091 11 C -0.138 4.138 12 C -0.161 4.161 13 C 0.098 3.902 14 C -0.490 4.490 15 H 0.095 0.905 16 C -0.146 4.146 17 N -0.438 5.438 18 Si 0.741 3.259 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.225 4.225 23 C -0.105 4.105 24 N -0.161 5.161 25 N -0.047 5.047 26 C -0.116 4.116 27 C -0.155 4.155 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.176 0.824 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.232 0.768 35 H 0.111 0.889 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.351 -18.058 2.909 23.879 hybrid contribution -0.489 1.095 -0.281 1.232 sum -15.840 -16.963 2.628 23.357 Atomic orbital electron populations 1.20909 0.88556 1.04254 1.03693 1.20868 0.98396 0.91915 0.94975 1.21450 0.91184 1.00666 1.03072 1.21511 0.90351 0.87514 0.92335 1.86339 1.18874 1.25152 1.86874 1.22458 0.78393 0.96880 1.04995 1.19945 0.83097 0.89850 0.78696 1.90736 1.62694 1.37519 1.47697 1.42764 1.05078 1.08934 1.72088 1.17226 0.98254 0.84114 1.09463 1.20316 0.95835 0.97819 0.99828 1.21199 1.01380 0.90220 1.03342 1.17754 0.89697 0.93112 0.89668 1.19548 1.28780 1.00097 1.00593 0.90491 1.25891 0.93972 0.99389 0.95361 1.69763 1.33290 1.35076 1.05686 0.86138 0.78762 0.81825 0.79200 1.18559 1.19971 1.19980 1.20807 0.97328 0.95773 1.08602 1.20407 0.98960 0.92441 0.98656 1.73060 1.31410 0.94377 1.17293 1.72683 1.06670 1.17876 1.07439 1.22643 0.92121 0.96667 1.00172 1.20652 0.99469 0.91858 1.03515 0.89599 0.90259 0.89874 0.82391 0.88457 0.88302 0.76755 0.88915 0.84932 0.91148 0.88498 0.87464 0.90028 0.90140 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 9.68 36.00 0.35 -0.13 16 2 C -0.05 -0.41 5.92 -104.28 -0.62 -1.03 16 3 C -0.13 -1.37 9.87 -39.05 -0.39 -1.76 16 4 C 0.27 3.52 7.57 -16.96 -0.13 3.39 16 5 O -0.27 -4.06 9.66 -38.69 -0.37 -4.44 16 6 C 0.05 0.71 5.81 36.01 0.21 0.91 16 7 C 0.50 8.91 7.74 -10.99 -0.09 8.82 16 8 O -0.51 -11.43 13.92 -14.35 -0.20 -11.63 16 9 N -0.64 -11.24 5.30 -9.74 -0.05 -11.29 16 10 C 0.00 0.03 6.30 -83.57 -0.53 -0.50 16 11 C -0.12 -2.67 9.90 -39.79 -0.39 -3.07 16 12 C -0.14 -3.63 8.62 -39.26 -0.34 -3.97 16 13 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 14 C -0.46 -12.27 9.02 -37.85 -0.34 -12.61 16 15 H 0.08 1.98 7.85 -52.48 -0.41 1.57 16 16 C 0.07 1.75 5.42 -17.34 -0.09 1.65 16 17 N -0.81 -21.11 10.60 55.54 0.59 -20.52 16 18 Si 0.92 19.03 29.56 -169.99 -5.03 14.01 16 19 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 C -0.21 -5.22 9.74 -39.26 -0.38 -5.60 16 23 C -0.08 -2.05 8.61 -39.79 -0.34 -2.39 16 24 N -0.30 -4.13 10.41 30.50 0.32 -3.81 16 25 N -0.20 -2.52 11.42 33.60 0.38 -2.14 16 26 C 0.03 0.29 6.86 -82.41 -0.57 -0.27 16 27 C -0.10 -0.50 9.82 36.00 0.35 -0.15 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.28 8.11 -51.93 -0.42 -0.14 16 30 H 0.08 0.21 6.07 -51.93 -0.32 -0.11 16 31 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.10 1.12 8.11 -51.93 -0.42 0.70 16 33 H 0.10 1.19 8.11 -51.93 -0.42 0.76 16 34 H 0.40 5.29 8.82 -40.82 -0.36 4.93 16 35 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 36 H 0.13 3.51 6.13 -52.49 -0.32 3.18 16 37 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 38 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 39 H 0.11 2.56 6.22 -52.48 -0.33 2.24 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.24 6.05 -51.93 -0.31 -0.08 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -33.30 361.01 -7.79 -41.09 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.98 Total: 7.90 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -3.88 Total: -14.60 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 1.24 Total: -37.77 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.57 Total: -16.07 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.30 -7.79 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107080678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.383 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds