Wall clock time and date at job start Tue Mar 31 2020 15:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38681 * 120.98946 * 2 1 4 4 C 1.39217 * 117.92767 * 180.02562 * 3 2 1 5 5 O 1.35692 * 120.14192 * 180.27409 * 4 3 2 6 6 C 1.42907 * 117.00278 * 179.72194 * 5 4 3 7 7 C 1.50699 * 109.46980 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00367 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99897 * 180.02562 * 7 6 5 10 10 C 1.39240 * 120.00288 * 175.70893 * 9 7 6 11 11 C 1.39478 * 119.83393 * 215.01475 * 10 9 7 12 12 C 1.36378 * 120.16816 * 179.76154 * 11 10 9 13 13 C 1.40865 * 119.82525 * 0.50780 * 12 11 10 14 14 C 1.41160 * 120.15926 * 179.72135 * 13 12 11 15 15 H 1.08003 * 119.99565 * 214.80393 * 14 13 12 16 16 C 1.39893 * 120.00331 * 34.80860 * 14 13 12 17 17 N 1.30873 * 120.00271 * 355.55300 * 16 14 13 18 18 Si 1.86802 * 120.00277 * 175.55751 * 16 14 13 19 19 H 1.48502 * 109.47084 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47071 * 119.99583 * 18 16 14 21 21 H 1.48503 * 109.47051 * 239.99691 * 18 16 14 22 22 C 1.40864 * 119.67638 * 359.74378 * 13 12 11 23 23 C 1.36376 * 119.82449 * 0.02562 * 22 13 12 24 24 N 1.32367 * 119.72144 * 0.02562 * 4 3 2 25 25 N 1.28346 * 122.09866 * 359.97438 * 24 4 3 26 26 C 1.31846 * 122.25771 * 0.02562 * 25 24 4 27 27 C 1.50696 * 120.00964 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.47064 * 269.97406 * 1 2 3 29 29 H 1.08995 * 109.47325 * 29.97489 * 1 2 3 30 30 H 1.09000 * 109.46863 * 149.97855 * 1 2 3 31 31 H 1.08005 * 121.03327 * 0.04428 * 3 2 1 32 32 H 1.08993 * 109.47434 * 300.00624 * 6 5 4 33 33 H 1.09002 * 109.46654 * 60.00728 * 6 5 4 34 34 H 0.97008 * 120.00111 * 355.70749 * 9 7 6 35 35 H 1.08004 * 119.91644 * 0.02562 * 11 10 9 36 36 H 1.08001 * 120.08817 * 180.25181 * 12 11 10 37 37 H 0.96995 * 120.00856 * 180.02562 * 17 16 14 38 38 H 1.07998 * 120.08825 * 179.97438 * 22 13 12 39 39 H 1.08003 * 119.91195 * 179.97438 * 23 22 13 40 40 H 1.09003 * 109.47548 * 90.00238 * 27 26 25 41 41 H 1.09002 * 109.46684 * 209.99610 * 27 26 25 42 42 H 1.08994 * 109.47938 * 329.99663 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2210 1.1889 0.0000 4 6 3.6112 1.1145 -0.0006 5 8 4.3543 2.2499 0.0050 6 6 5.7750 2.0955 0.0103 7 6 6.4278 3.4537 0.0167 8 8 5.7439 4.4553 0.0163 9 7 7.7717 3.5554 0.0218 10 6 8.3755 4.8072 -0.0626 11 6 9.5757 4.9532 -0.7580 12 6 10.1705 6.1771 -0.8490 13 6 9.5752 7.2932 -0.2293 14 6 10.1879 8.5621 -0.3140 15 1 10.1267 9.2479 0.5181 16 6 10.8742 8.9313 -1.4758 17 7 11.0232 8.0698 -2.4496 18 14 11.5782 10.6541 -1.6371 19 1 11.2757 11.4296 -0.4074 20 1 13.0494 10.5723 -1.8219 21 1 10.9686 11.3300 -2.8106 22 6 8.3658 7.1368 0.4758 23 6 7.7804 5.9076 0.5541 24 7 4.2051 -0.0685 -0.0016 25 7 3.5394 -1.1658 -0.0016 26 6 2.2212 -1.1892 -0.0011 27 6 1.4907 -2.5073 -0.0006 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.7143 2.1427 0.0007 32 1 6.0772 1.5432 0.9000 33 1 6.0841 1.5476 -0.8799 34 1 8.3183 2.7564 0.0842 35 1 10.0329 4.0957 -1.2293 36 1 11.0977 6.2894 -1.3913 37 1 11.4994 8.3256 -3.2550 38 1 7.9038 7.9880 0.9538 39 1 6.8533 5.7860 1.0947 40 1 1.3149 -2.8249 1.0272 41 1 0.5360 -2.3937 -0.5140 42 1 2.0927 -3.2566 -0.5145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107080678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:51 Heat of formation + Delta-G solvation = -14.891803 kcal Electronic energy + Delta-G solvation = -25592.934706 eV Core-core repulsion = 21730.914223 eV Total energy + Delta-G solvation = -3862.020482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.43019 -41.38877 -39.80788 -38.84955 -36.23440 -35.87195 -34.80135 -33.84346 -31.59682 -31.29587 -30.06235 -28.90442 -28.75017 -26.59771 -24.45028 -23.68421 -23.27340 -22.64295 -21.42224 -19.72716 -19.34008 -18.98843 -18.22865 -17.82686 -17.55727 -17.01962 -16.60570 -16.43186 -15.89514 -15.73934 -15.47604 -14.86966 -14.70985 -14.58285 -14.35717 -14.08313 -13.97142 -13.92506 -13.70955 -13.61839 -13.50895 -13.28265 -12.92964 -12.81206 -12.77842 -12.50567 -12.48579 -12.14890 -11.80160 -11.41981 -11.27443 -10.91626 -10.79155 -10.72078 -10.65006 -10.08325 -9.50356 -8.79272 -8.52975 -6.36083 -0.31986 -0.08713 0.70996 1.10365 1.26016 1.38624 1.39253 1.53917 1.65330 2.23058 2.39724 2.44799 2.77668 2.98223 3.29251 3.52986 3.59945 3.66825 3.73414 3.89739 4.02121 4.04183 4.36316 4.37443 4.48602 4.54690 4.66793 4.79249 4.84173 4.89482 4.90667 5.08045 5.11236 5.11301 5.16960 5.28782 5.38269 5.43854 5.66417 5.79092 5.86365 5.98534 6.10424 6.35245 6.56799 6.65312 6.94171 6.95494 7.21965 7.57410 8.40112 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.038626 B = 0.001859 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.733613 B =15057.834601 C =15390.095477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.038 4.038 3 C -0.147 4.147 4 C 0.246 3.754 5 O -0.296 6.296 6 C 0.065 3.935 7 C 0.501 3.499 8 O -0.559 6.559 9 N -0.634 5.634 10 C 0.017 3.983 11 C -0.114 4.114 12 C -0.159 4.159 13 C 0.068 3.932 14 C -0.496 4.496 15 H 0.073 0.927 16 C 0.027 3.973 17 N -0.840 5.840 18 Si 0.990 3.010 19 H -0.260 1.260 20 H -0.262 1.262 21 H -0.270 1.270 22 C -0.221 4.221 23 C -0.097 4.097 24 N -0.328 5.328 25 N -0.238 5.238 26 C 0.034 3.966 27 C -0.097 4.097 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.170 0.830 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.422 0.578 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.285 0.715 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.060 -20.340 2.894 27.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.049 4.049 3 C -0.176 4.176 4 C 0.061 3.939 5 O -0.199 6.199 6 C -0.013 4.013 7 C 0.289 3.711 8 O -0.437 6.437 9 N -0.280 5.280 10 C -0.076 4.076 11 C -0.134 4.134 12 C -0.179 4.179 13 C 0.066 3.934 14 C -0.526 4.526 15 H 0.091 0.909 16 C -0.185 4.185 17 N -0.468 5.468 18 Si 0.811 3.189 19 H -0.184 1.184 20 H -0.186 1.186 21 H -0.195 1.195 22 C -0.241 4.241 23 C -0.117 4.117 24 N -0.184 5.184 25 N -0.080 5.080 26 C -0.115 4.115 27 C -0.154 4.154 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.188 0.812 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.261 0.739 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.128 0.872 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.057 -20.188 2.655 26.562 hybrid contribution -0.164 1.505 -0.168 1.523 sum -17.221 -18.683 2.487 25.530 Atomic orbital electron populations 1.21083 0.85210 1.05837 1.05152 1.21351 1.00488 0.90587 0.92483 1.21772 0.90313 1.02241 1.03273 1.21728 0.91187 0.87002 0.94022 1.86284 1.19201 1.26658 1.87777 1.22328 0.78283 0.93699 1.06992 1.20666 0.82713 0.91021 0.76747 1.90716 1.63729 1.39656 1.49645 1.42631 1.05523 1.08197 1.71680 1.17272 0.97634 0.85462 1.07270 1.20573 0.95721 0.97977 0.99142 1.21193 1.01476 0.91216 1.04022 1.18074 0.90534 0.93965 0.90868 1.19765 1.30774 1.00514 1.01589 0.90855 1.26755 0.93778 1.03510 0.94443 1.69820 1.33775 1.36972 1.06229 0.85042 0.78396 0.76428 0.79083 1.18387 1.18638 1.19452 1.20925 0.97458 0.96586 1.09092 1.20523 0.99039 0.92852 0.99284 1.72942 1.32400 0.94677 1.18358 1.72614 1.08547 1.17567 1.09312 1.23344 0.91369 0.98829 0.97927 1.20843 1.00173 0.89559 1.04874 0.87887 0.89416 0.87592 0.81212 0.86103 0.86375 0.73941 0.85383 0.86113 0.90394 0.88511 0.87545 0.88476 0.87199 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.49 9.68 71.23 0.69 0.20 16 2 C -0.04 -0.53 5.92 -19.64 -0.12 -0.65 16 3 C -0.15 -2.85 9.87 22.61 0.22 -2.63 16 4 C 0.25 6.38 7.57 84.85 0.64 7.02 16 5 O -0.30 -8.87 9.66 -71.07 -0.69 -9.56 16 6 C 0.07 1.72 5.81 71.24 0.41 2.13 16 7 C 0.50 17.60 7.74 87.66 0.68 18.28 16 8 O -0.56 -25.34 13.92 16.00 0.22 -25.12 16 9 N -0.63 -21.30 5.30 -303.13 -1.61 -22.90 16 10 C 0.02 0.74 6.30 38.56 0.24 0.98 16 11 C -0.11 -5.13 9.90 22.13 0.22 -4.91 16 12 C -0.16 -8.35 8.62 22.48 0.19 -8.16 16 13 C 0.07 3.80 5.55 -21.28 -0.12 3.68 16 14 C -0.50 -27.51 9.02 23.39 0.21 -27.30 16 15 H 0.07 3.94 7.85 -2.91 -0.02 3.92 16 16 C 0.03 1.40 5.42 85.24 0.46 1.86 16 17 N -0.84 -44.59 10.60 21.82 0.23 -44.36 16 18 Si 0.99 39.44 29.56 68.60 2.03 41.46 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 20 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 21 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 22 C -0.22 -11.70 9.74 22.48 0.22 -11.48 16 23 C -0.10 -4.79 8.61 22.13 0.19 -4.60 16 24 N -0.33 -8.73 10.41 -170.23 -1.77 -10.51 16 25 N -0.24 -5.69 11.42 -47.61 -0.54 -6.23 16 26 C 0.03 0.55 6.86 42.67 0.29 0.84 16 27 C -0.10 -0.68 9.82 71.23 0.70 0.02 16 28 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 29 H 0.09 0.30 8.11 -2.39 -0.02 0.28 16 30 H 0.11 0.00 6.07 -2.39 -0.01 -0.01 16 31 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 32 H 0.12 2.61 8.11 -2.39 -0.02 2.59 16 33 H 0.12 2.66 8.11 -2.39 -0.02 2.64 16 34 H 0.42 10.20 8.82 -92.70 -0.82 9.38 16 35 H 0.13 4.77 8.06 -2.91 -0.02 4.74 16 36 H 0.12 6.58 6.13 -2.91 -0.02 6.56 16 37 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 38 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 39 H 0.11 5.24 6.22 -2.91 -0.02 5.22 16 40 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.11 0.13 6.05 -2.39 -0.01 0.12 16 42 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -76.35 361.01 3.27 -73.07 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.26 Total: 28.85 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 5.14 Total: -24.71 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -3.69 Total: -84.00 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.46 Total: -34.68 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.46 kcal Total: -76.35 3.27 -73.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107080678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.179 kcal (2) G-P(sol) polarization free energy of solvation -76.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds