Wall clock time and date at job start Tue Mar 31 2020 15:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38678 * 120.98643 * 2 1 4 4 C 1.39220 * 117.92394 * 180.02562 * 3 2 1 5 5 O 1.35696 * 120.14464 * 180.27543 * 4 3 2 6 6 C 1.42892 * 117.00720 * 179.72684 * 5 4 3 7 7 C 1.50697 * 109.47476 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99593 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00035 * 179.97438 * 7 6 5 10 10 C 1.37136 * 120.00251 * 354.95091 * 9 7 6 11 11 H 1.08004 * 119.99776 * 344.74528 * 10 9 7 12 12 C 1.38887 * 120.00320 * 164.74177 * 10 9 7 13 13 N 1.31429 * 119.99700 * 343.62255 * 12 10 9 14 14 Si 1.86791 * 120.00477 * 163.62649 * 12 10 9 15 15 H 1.48508 * 109.47122 * 59.99852 * 14 12 10 16 16 H 1.48501 * 109.47565 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47137 * 300.00073 * 14 12 10 18 18 C 1.39792 * 119.99922 * 174.95100 * 9 7 6 19 19 C 1.38965 * 120.07729 * 101.20957 * 18 9 7 20 20 C 1.38078 * 119.92071 * 179.79502 * 19 18 9 21 21 C 1.38308 * 120.08017 * 0.45776 * 20 19 18 22 22 C 1.38312 * 120.15607 * 359.79570 * 21 20 19 23 23 C 1.38085 * 120.07596 * 359.97438 * 22 21 20 24 24 N 1.32370 * 119.72562 * 0.02562 * 4 3 2 25 25 N 1.28357 * 122.09411 * 359.97438 * 24 4 3 26 26 C 1.31838 * 122.25524 * 359.97438 * 25 24 4 27 27 C 1.50701 * 120.00988 * 180.02562 * 26 25 24 28 28 H 1.08997 * 109.46940 * 269.97252 * 1 2 3 29 29 H 1.08996 * 109.46930 * 29.97761 * 1 2 3 30 30 H 1.08999 * 109.46634 * 149.97798 * 1 2 3 31 31 H 1.07998 * 121.03844 * 0.04681 * 3 2 1 32 32 H 1.09003 * 109.47005 * 300.00244 * 6 5 4 33 33 H 1.08997 * 109.47133 * 60.00059 * 6 5 4 34 34 H 0.97004 * 120.00013 * 185.01519 * 13 12 10 35 35 H 1.07996 * 120.03592 * 359.97438 * 19 18 9 36 36 H 1.08002 * 119.96526 * 180.25268 * 20 19 18 37 37 H 1.07997 * 119.92416 * 179.76797 * 21 20 19 38 38 H 1.07996 * 119.96353 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.04013 * 179.97438 * 23 22 21 40 40 H 1.08993 * 109.47436 * 89.99865 * 27 26 25 41 41 H 1.09006 * 109.47022 * 209.99803 * 27 26 25 42 42 H 1.08997 * 109.46859 * 329.99461 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2210 1.1889 0.0000 4 6 3.6112 1.1145 -0.0006 5 8 4.3544 2.2498 0.0051 6 6 5.7749 2.0955 0.0102 7 6 6.4278 3.4537 0.0166 8 8 5.7439 4.4553 0.0163 9 7 7.7717 3.5553 0.0227 10 6 8.5443 2.4271 0.1275 11 1 8.1002 1.4966 0.4492 12 6 9.8976 2.4811 -0.1799 13 7 10.3755 3.4947 -0.8666 14 14 11.0385 1.1131 0.3823 15 1 10.5894 -0.1769 -0.2005 16 1 12.4225 1.4057 -0.0694 17 1 11.0106 1.0231 1.8643 18 6 8.3782 4.8108 -0.0779 19 6 8.8780 5.4358 1.0582 20 6 9.4802 6.6740 0.9545 21 6 9.5778 7.2965 -0.2767 22 6 9.0767 6.6797 -1.4088 23 6 8.4775 5.4393 -1.3132 24 7 4.2052 -0.0684 -0.0016 25 7 3.5394 -1.1659 -0.0016 26 6 2.2213 -1.1892 -0.0001 27 6 1.4907 -2.5073 0.0004 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3632 -0.8898 -0.5142 31 1 1.7144 2.1427 0.0008 32 1 6.0772 1.5432 0.9000 33 1 6.0840 1.5476 -0.8799 34 1 11.3051 3.4974 -1.1440 35 1 8.7982 4.9523 2.0206 36 1 9.8726 7.1586 1.8363 37 1 10.0459 8.2666 -0.3544 38 1 9.1542 7.1688 -2.3685 39 1 8.0860 4.9585 -2.1975 40 1 1.3158 -2.8254 1.0281 41 1 0.5355 -2.3935 -0.5123 42 1 2.0924 -3.2563 -0.5144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107081171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:56 Heat of formation + Delta-G solvation = 27.369894 kcal Electronic energy + Delta-G solvation = -26924.677448 eV Core-core repulsion = 23064.489570 eV Total energy + Delta-G solvation = -3860.187878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.23549 -39.53398 -38.34592 -36.99460 -34.92144 -34.77392 -32.74208 -31.75379 -29.90854 -29.74127 -28.76180 -27.86884 -27.02209 -25.00488 -23.45240 -22.46097 -21.58615 -21.49351 -19.43889 -18.46978 -17.71244 -17.41182 -16.27610 -16.00058 -15.65113 -15.47688 -15.05745 -14.74434 -14.49875 -14.25468 -13.97818 -13.74438 -13.50679 -13.33972 -13.18281 -13.03964 -12.73809 -12.51922 -12.41728 -12.33859 -12.16470 -11.64088 -11.51941 -11.17318 -11.14826 -10.98785 -10.91576 -10.55695 -10.38711 -10.30327 -9.84013 -9.53994 -9.46845 -8.80815 -8.68497 -8.21285 -7.88992 -7.60765 -6.31415 -4.10510 0.74133 1.04649 2.41756 2.48909 2.91629 3.08195 3.17838 3.19821 3.52986 3.60165 3.98883 4.07478 4.31339 4.43485 4.50950 4.72166 4.81661 4.87767 5.00961 5.13540 5.21714 5.30836 5.38494 5.53123 5.56355 5.71067 5.75707 5.78130 5.81552 5.88938 5.94264 6.00710 6.04025 6.17290 6.39546 6.54160 6.76712 7.02128 7.21043 7.29624 7.33833 7.43278 7.55346 7.71948 7.93379 8.34584 8.75876 8.90556 9.22356 9.65163 10.53377 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.003258 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.585300 B = 8591.577234 C =10043.063405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.055 4.055 3 C -0.139 4.139 4 C 0.273 3.727 5 O -0.275 6.275 6 C 0.071 3.929 7 C 0.463 3.537 8 O -0.579 6.579 9 N -0.404 5.404 10 C -0.363 4.363 11 H 0.105 0.895 12 C 0.049 3.951 13 N -0.844 5.844 14 Si 0.922 3.078 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.238 3.762 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.144 4.144 22 C -0.121 4.121 23 C -0.066 4.066 24 N -0.300 5.300 25 N -0.202 5.202 26 C 0.023 3.977 27 C -0.094 4.094 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.274 0.726 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.940 -5.614 0.976 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.065 4.065 3 C -0.168 4.168 4 C 0.088 3.912 5 O -0.177 6.177 6 C -0.006 4.006 7 C 0.252 3.748 8 O -0.463 6.463 9 N -0.122 5.122 10 C -0.488 4.488 11 H 0.123 0.877 12 C -0.160 4.160 13 N -0.478 5.478 14 Si 0.748 3.252 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.196 1.196 18 C 0.148 3.852 19 C -0.141 4.141 20 C -0.141 4.141 21 C -0.162 4.162 22 C -0.140 4.140 23 C -0.085 4.085 24 N -0.158 5.158 25 N -0.046 5.046 26 C -0.125 4.125 27 C -0.152 4.152 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.173 0.827 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.645 -5.497 0.936 12.911 hybrid contribution -0.070 -0.092 0.177 0.211 sum -11.715 -5.589 1.113 13.027 Atomic orbital electron populations 1.20872 0.88867 1.03980 1.03447 1.20811 0.98136 0.92048 0.95539 1.21420 0.91359 1.00411 1.03658 1.21591 0.90373 0.87803 0.91450 1.86301 1.20400 1.24821 1.86153 1.22354 0.75873 0.97802 1.04616 1.19504 0.82404 0.89361 0.83549 1.90616 1.62660 1.37788 1.55285 1.41165 1.03159 1.05031 1.62830 1.19630 0.91140 0.89269 1.48806 0.87718 1.25274 0.97764 0.97861 0.95052 1.69934 1.16370 1.29903 1.31603 0.86059 0.79010 0.80613 0.79521 1.19480 1.20716 1.19623 1.17055 0.91789 0.83998 0.92381 1.20979 1.00163 0.95215 0.97729 1.20661 1.01034 0.95507 0.96944 1.20752 1.02740 0.99591 0.93142 1.20684 1.00215 0.95590 0.97518 1.20805 0.97426 0.94053 0.96240 1.73165 1.31104 0.94385 1.17105 1.72707 1.06494 1.18311 1.07070 1.22595 0.92284 0.96465 1.01109 1.20612 0.99316 0.92055 1.03265 0.89847 0.90470 0.90070 0.82655 0.89176 0.88642 0.91448 0.87418 0.87524 0.87692 0.87498 0.87656 0.90284 0.90380 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.68 36.01 0.35 -0.38 16 2 C -0.05 -0.60 5.92 -104.28 -0.62 -1.22 16 3 C -0.14 -1.87 9.87 -39.05 -0.39 -2.26 16 4 C 0.27 4.76 7.57 -16.95 -0.13 4.64 16 5 O -0.27 -5.57 9.66 -38.70 -0.37 -5.95 16 6 C 0.07 1.51 4.35 36.00 0.16 1.67 16 7 C 0.46 11.49 7.66 -10.99 -0.08 11.40 16 8 O -0.58 -15.81 16.48 -14.36 -0.24 -16.04 16 9 N -0.40 -10.25 2.66 -58.98 -0.16 -10.41 16 10 C -0.36 -9.05 9.19 -14.94 -0.14 -9.18 16 11 H 0.11 2.46 6.46 -52.48 -0.34 2.12 16 12 C 0.05 1.21 5.24 -17.48 -0.09 1.12 16 13 N -0.84 -21.57 10.34 55.49 0.57 -20.99 16 14 Si 0.92 19.40 29.59 -169.99 -5.03 14.37 16 15 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 16 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 18 C 0.24 5.95 2.29 -83.69 -0.19 5.76 16 19 C -0.12 -2.82 9.95 -39.37 -0.39 -3.22 16 20 C -0.12 -2.49 10.04 -39.61 -0.40 -2.89 16 21 C -0.14 -2.79 10.04 -39.53 -0.40 -3.19 16 22 C -0.12 -2.50 10.04 -39.61 -0.40 -2.90 16 23 C -0.07 -1.57 8.66 -39.37 -0.34 -1.91 16 24 N -0.30 -5.45 10.41 30.50 0.32 -5.14 16 25 N -0.20 -3.27 11.42 33.60 0.38 -2.88 16 26 C 0.02 0.29 6.86 -82.41 -0.57 -0.28 16 27 C -0.09 -0.73 9.82 36.01 0.35 -0.38 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.43 8.11 -51.93 -0.42 0.01 16 30 H 0.08 0.38 6.07 -51.93 -0.32 0.06 16 31 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.09 1.82 7.50 -51.93 -0.39 1.44 16 33 H 0.10 1.98 8.11 -51.93 -0.42 1.56 16 34 H 0.27 6.77 8.32 -40.82 -0.34 6.43 16 35 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 36 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.11 1.89 8.06 -52.49 -0.42 1.46 16 39 H 0.11 2.55 8.06 -52.49 -0.42 2.13 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.41 6.05 -51.93 -0.31 0.10 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -31.72 362.44 -7.47 -39.19 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.14 Total: 5.62 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -3.27 Total: -3.22 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 1.12 Total: -39.42 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.61 Total: -21.99 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.72 -7.47 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107081171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.556 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds