Wall clock time and date at job start Tue Mar 31 2020 15:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38678 * 120.98643 * 2 1 4 4 C 1.39220 * 117.92394 * 180.02562 * 3 2 1 5 5 O 1.35696 * 120.14464 * 180.27543 * 4 3 2 6 6 C 1.42892 * 117.00720 * 179.72684 * 5 4 3 7 7 C 1.50697 * 109.47476 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99593 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00035 * 179.97438 * 7 6 5 10 10 C 1.37136 * 120.00251 * 354.95091 * 9 7 6 11 11 H 1.08004 * 119.99776 * 344.74528 * 10 9 7 12 12 C 1.38887 * 120.00320 * 164.74177 * 10 9 7 13 13 N 1.31429 * 119.99700 * 343.62255 * 12 10 9 14 14 Si 1.86791 * 120.00477 * 163.62649 * 12 10 9 15 15 H 1.48508 * 109.47122 * 59.99852 * 14 12 10 16 16 H 1.48501 * 109.47565 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47137 * 300.00073 * 14 12 10 18 18 C 1.39792 * 119.99922 * 174.95100 * 9 7 6 19 19 C 1.38965 * 120.07729 * 101.20957 * 18 9 7 20 20 C 1.38078 * 119.92071 * 179.79502 * 19 18 9 21 21 C 1.38308 * 120.08017 * 0.45776 * 20 19 18 22 22 C 1.38312 * 120.15607 * 359.79570 * 21 20 19 23 23 C 1.38085 * 120.07596 * 359.97438 * 22 21 20 24 24 N 1.32370 * 119.72562 * 0.02562 * 4 3 2 25 25 N 1.28357 * 122.09411 * 359.97438 * 24 4 3 26 26 C 1.31838 * 122.25524 * 359.97438 * 25 24 4 27 27 C 1.50701 * 120.00988 * 180.02562 * 26 25 24 28 28 H 1.08997 * 109.46940 * 269.97252 * 1 2 3 29 29 H 1.08996 * 109.46930 * 29.97761 * 1 2 3 30 30 H 1.08999 * 109.46634 * 149.97798 * 1 2 3 31 31 H 1.07998 * 121.03844 * 0.04681 * 3 2 1 32 32 H 1.09003 * 109.47005 * 300.00244 * 6 5 4 33 33 H 1.08997 * 109.47133 * 60.00059 * 6 5 4 34 34 H 0.97004 * 120.00013 * 185.01519 * 13 12 10 35 35 H 1.07996 * 120.03592 * 359.97438 * 19 18 9 36 36 H 1.08002 * 119.96526 * 180.25268 * 20 19 18 37 37 H 1.07997 * 119.92416 * 179.76797 * 21 20 19 38 38 H 1.07996 * 119.96353 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.04013 * 179.97438 * 23 22 21 40 40 H 1.08993 * 109.47436 * 89.99865 * 27 26 25 41 41 H 1.09006 * 109.47022 * 209.99803 * 27 26 25 42 42 H 1.08997 * 109.46859 * 329.99461 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2210 1.1889 0.0000 4 6 3.6112 1.1145 -0.0006 5 8 4.3544 2.2498 0.0051 6 6 5.7749 2.0955 0.0102 7 6 6.4278 3.4537 0.0166 8 8 5.7439 4.4553 0.0163 9 7 7.7717 3.5553 0.0227 10 6 8.5443 2.4271 0.1275 11 1 8.1002 1.4966 0.4492 12 6 9.8976 2.4811 -0.1799 13 7 10.3755 3.4947 -0.8666 14 14 11.0385 1.1131 0.3823 15 1 10.5894 -0.1769 -0.2005 16 1 12.4225 1.4057 -0.0694 17 1 11.0106 1.0231 1.8643 18 6 8.3782 4.8108 -0.0779 19 6 8.8780 5.4358 1.0582 20 6 9.4802 6.6740 0.9545 21 6 9.5778 7.2965 -0.2767 22 6 9.0767 6.6797 -1.4088 23 6 8.4775 5.4393 -1.3132 24 7 4.2052 -0.0684 -0.0016 25 7 3.5394 -1.1659 -0.0016 26 6 2.2213 -1.1892 -0.0001 27 6 1.4907 -2.5073 0.0004 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3632 -0.8898 -0.5142 31 1 1.7144 2.1427 0.0008 32 1 6.0772 1.5432 0.9000 33 1 6.0840 1.5476 -0.8799 34 1 11.3051 3.4974 -1.1440 35 1 8.7982 4.9523 2.0206 36 1 9.8726 7.1586 1.8363 37 1 10.0459 8.2666 -0.3544 38 1 9.1542 7.1688 -2.3685 39 1 8.0860 4.9585 -2.1975 40 1 1.3158 -2.8254 1.0281 41 1 0.5355 -2.3935 -0.5123 42 1 2.0924 -3.2563 -0.5144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107081171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:55 Heat of formation + Delta-G solvation = 7.972299 kcal Electronic energy + Delta-G solvation = -26925.518590 eV Core-core repulsion = 23064.489570 eV Total energy + Delta-G solvation = -3861.029021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.39027 -41.32200 -39.83074 -38.69946 -36.68674 -35.85720 -33.81623 -33.68102 -31.60119 -31.35356 -29.83674 -28.80511 -28.47391 -26.91864 -24.47269 -23.72954 -23.25557 -23.00354 -21.28319 -20.00652 -19.25233 -18.78865 -17.74636 -17.61991 -17.25367 -16.65193 -16.57341 -16.40954 -16.16204 -15.77760 -15.55154 -14.76120 -14.72939 -14.67959 -14.31539 -14.12985 -13.97134 -13.91174 -13.65564 -13.49721 -13.41934 -13.25735 -12.88872 -12.78483 -12.75104 -12.43756 -12.26830 -12.11843 -12.09114 -12.02956 -11.30959 -10.77302 -10.71497 -10.57013 -10.10334 -10.05271 -9.60285 -9.37781 -8.18524 -6.06371 -0.29159 -0.05239 0.72272 0.78059 1.33813 1.41932 1.48884 1.55761 1.73170 2.25158 2.42187 2.81653 3.00720 3.04379 3.19969 3.33643 3.60767 3.75719 3.92632 3.94395 4.11596 4.18926 4.23181 4.26653 4.37317 4.39821 4.55672 4.68477 4.72519 4.81249 4.86349 4.87450 4.93169 5.03932 5.11730 5.18696 5.30989 5.33207 5.45706 5.59563 5.74422 5.77323 5.88284 5.96860 6.19860 6.49968 6.96821 7.31402 7.62050 7.74500 8.63347 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.003258 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.585300 B = 8591.577234 C =10043.063405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.037 4.037 3 C -0.147 4.147 4 C 0.243 3.757 5 O -0.296 6.296 6 C 0.093 3.907 7 C 0.448 3.552 8 O -0.615 6.615 9 N -0.408 5.408 10 C -0.383 4.383 11 H 0.110 0.890 12 C 0.013 3.987 13 N -0.861 5.861 14 Si 0.986 3.014 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.269 1.269 18 C 0.206 3.794 19 C -0.148 4.148 20 C -0.118 4.118 21 C -0.137 4.137 22 C -0.119 4.119 23 C -0.094 4.094 24 N -0.338 5.338 25 N -0.241 5.241 26 C 0.030 3.970 27 C -0.094 4.094 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.174 0.826 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.274 0.726 35 H 0.100 0.900 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.138 0.862 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.134 -6.070 1.357 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.048 4.048 3 C -0.176 4.176 4 C 0.057 3.943 5 O -0.200 6.200 6 C 0.015 3.985 7 C 0.238 3.762 8 O -0.502 6.502 9 N -0.125 5.125 10 C -0.508 4.508 11 H 0.128 0.872 12 C -0.194 4.194 13 N -0.495 5.495 14 Si 0.809 3.191 15 H -0.189 1.189 16 H -0.203 1.203 17 H -0.194 1.194 18 C 0.116 3.884 19 C -0.167 4.167 20 C -0.137 4.137 21 C -0.154 4.154 22 C -0.138 4.138 23 C -0.114 4.114 24 N -0.193 5.193 25 N -0.083 5.083 26 C -0.119 4.119 27 C -0.152 4.152 28 H 0.122 0.878 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.191 0.809 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.156 0.844 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.131 0.869 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.830 -5.980 1.313 14.216 hybrid contribution 0.161 0.017 0.038 0.166 sum -12.670 -5.963 1.351 14.068 Atomic orbital electron populations 1.21078 0.84680 1.05932 1.05228 1.21394 1.00663 0.90337 0.92394 1.21776 0.89753 1.02479 1.03558 1.21916 0.91565 0.87068 0.93759 1.86247 1.19498 1.26818 1.87410 1.21935 0.77031 0.95290 1.04285 1.20085 0.82431 0.90339 0.83349 1.90551 1.63323 1.39158 1.57183 1.41399 1.03467 1.05687 1.61918 1.19965 0.91768 0.89640 1.49475 0.87202 1.26066 0.98598 1.00054 0.94647 1.70088 1.16384 1.31211 1.31838 0.85090 0.76957 0.78049 0.78969 1.18929 1.20320 1.19361 1.17414 0.93102 0.84346 0.93497 1.21136 1.01733 0.96938 0.96939 1.21108 0.99414 0.94180 0.98956 1.21252 1.01279 1.00949 0.91955 1.21087 0.98688 0.94315 0.99706 1.20837 0.99457 0.95870 0.95224 1.73028 1.32690 0.95027 1.18561 1.72630 1.08790 1.17594 1.09310 1.23444 0.91307 0.99088 0.98082 1.20838 1.00134 0.89300 1.04889 0.87761 0.89234 0.87451 0.80903 0.89029 0.89162 0.91563 0.88190 0.83910 0.83124 0.84441 0.89776 0.88430 0.86866 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.68 71.24 0.69 -0.25 16 2 C -0.04 -0.74 5.92 -19.64 -0.12 -0.85 16 3 C -0.15 -3.95 9.87 22.61 0.22 -3.72 16 4 C 0.24 8.93 7.57 84.85 0.64 9.57 16 5 O -0.30 -12.92 9.66 -71.12 -0.69 -13.61 16 6 C 0.09 4.25 4.35 71.24 0.31 4.56 16 7 C 0.45 23.84 7.66 87.66 0.67 24.51 16 8 O -0.61 -35.83 16.48 16.00 0.26 -35.57 16 9 N -0.41 -21.95 2.66 -458.89 -1.22 -23.17 16 10 C -0.38 -20.00 9.19 84.02 0.77 -19.23 16 11 H 0.11 5.43 6.46 -2.91 -0.02 5.42 16 12 C 0.01 0.66 5.24 84.91 0.44 1.10 16 13 N -0.86 -44.94 10.34 21.65 0.22 -44.71 16 14 Si 0.99 40.28 29.59 68.60 2.03 42.31 16 15 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 16 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 17 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 18 C 0.21 10.76 2.29 38.22 0.09 10.84 16 19 C -0.15 -7.04 9.95 22.41 0.22 -6.82 16 20 C -0.12 -4.62 10.04 22.25 0.22 -4.39 16 21 C -0.14 -4.94 10.04 22.30 0.22 -4.72 16 22 C -0.12 -4.83 10.04 22.25 0.22 -4.61 16 23 C -0.09 -4.67 8.66 22.41 0.19 -4.47 16 24 N -0.34 -12.95 10.41 -170.22 -1.77 -14.72 16 25 N -0.24 -7.93 11.42 -47.60 -0.54 -8.48 16 26 C 0.03 0.69 6.86 42.67 0.29 0.98 16 27 C -0.09 -1.15 9.82 71.24 0.70 -0.45 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 0.62 8.11 -2.39 -0.02 0.60 16 30 H 0.11 0.39 6.07 -2.39 -0.01 0.38 16 31 H 0.17 3.86 8.06 -2.91 -0.02 3.83 16 32 H 0.09 4.05 7.50 -2.39 -0.02 4.03 16 33 H 0.09 4.11 8.11 -2.39 -0.02 4.09 16 34 H 0.27 13.65 8.32 -92.71 -0.77 12.88 16 35 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 36 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.08 4.36 8.06 -2.91 -0.02 4.34 16 40 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 0.61 6.05 -2.38 -0.01 0.60 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -74.94 362.44 5.15 -69.80 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 1.05 Total: 26.09 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 5.80 Total: 2.05 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -3.31 Total: -91.08 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -0.42 Total: -49.18 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -74.94 5.15 -69.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107081171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.771 kcal (2) G-P(sol) polarization free energy of solvation -74.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds