Wall clock time and date at job start Tue Mar 31 2020 15:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30844 * 125.89908 * 2 1 4 4 N 1.40087 * 108.20629 * 180.02562 * 3 2 1 5 5 H 0.96992 * 126.03346 * 179.97438 * 4 3 2 6 6 C 1.34943 * 107.92173 * 359.75798 * 4 3 2 7 7 C 1.50702 * 126.12566 * 180.23663 * 6 4 3 8 8 C 1.35315 * 107.75151 * 0.39171 * 6 4 3 9 9 S 1.76197 * 126.04233 * 179.87419 * 8 6 4 10 10 O 1.42103 * 106.40451 * 156.17336 * 9 8 6 11 11 O 1.42098 * 106.40475 * 23.24936 * 9 8 6 12 12 N 1.65599 * 107.21739 * 269.71094 * 9 8 6 13 13 C 1.46497 * 120.00293 * 269.99999 * 12 9 8 14 14 C 1.50701 * 109.47190 * 265.00160 * 13 12 9 15 15 H 1.07998 * 119.99918 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00217 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99890 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00275 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46883 * 89.99700 * 18 16 14 20 20 H 1.48497 * 109.47057 * 209.99680 * 18 16 14 21 21 H 1.48499 * 109.47041 * 330.00133 * 18 16 14 22 22 C 1.46500 * 119.99991 * 90.00235 * 12 9 8 23 23 C 1.54961 * 110.92632 * 126.53959 * 22 12 9 24 24 C 1.54270 * 104.16191 * 156.29508 * 23 22 12 25 25 C 1.53869 * 106.63967 * 336.44607 * 24 23 22 26 26 C 1.54268 * 106.60115 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.46890 * 269.97158 * 1 2 3 28 28 H 1.08997 * 109.47042 * 29.97085 * 1 2 3 29 29 H 1.09000 * 109.46904 * 149.97322 * 1 2 3 30 30 H 1.08998 * 109.47592 * 270.18223 * 7 6 4 31 31 H 1.09004 * 109.46839 * 30.17954 * 7 6 4 32 32 H 1.09002 * 109.47235 * 150.17687 * 7 6 4 33 33 H 1.08998 * 109.47310 * 24.99991 * 13 12 9 34 34 H 1.09000 * 109.47511 * 145.00204 * 13 12 9 35 35 H 0.96990 * 120.00233 * 180.02562 * 17 16 14 36 36 H 1.09001 * 110.67461 * 3.23071 * 22 12 9 37 37 H 1.08997 * 110.47708 * 37.64106 * 23 22 12 38 38 H 1.09002 * 110.53308 * 274.97498 * 23 22 12 39 39 H 1.09002 * 110.03399 * 217.13605 * 24 23 22 40 40 H 1.08995 * 110.02943 * 95.75505 * 24 23 22 41 41 H 1.08999 * 110.03405 * 119.26051 * 25 24 23 42 42 H 1.09001 * 110.03705 * 240.64196 * 25 24 23 43 43 H 1.08997 * 110.48788 * 142.28685 * 26 25 24 44 44 H 1.09000 * 110.48806 * 264.79985 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 1 4.3908 1.2080 -0.0011 6 6 3.6142 -0.7153 0.0045 7 6 4.8350 -1.5988 0.0108 8 6 2.3272 -1.1330 -0.0006 9 16 1.7809 -2.8081 -0.0004 10 8 0.4685 -2.8022 0.5444 11 8 2.8448 -3.5771 0.5438 12 7 1.6285 -3.2743 -1.5821 13 6 0.3549 -3.0872 -2.2814 14 6 -0.4518 -4.3577 -2.2045 15 1 -0.0553 -5.2186 -1.6868 16 6 -1.6962 -4.4211 -2.7950 17 7 -2.1793 -3.3726 -3.4250 18 14 -2.6959 -5.9962 -2.7002 19 1 -3.5484 -5.9690 -1.4845 20 1 -3.5559 -6.1099 -3.9055 21 1 -1.7781 -7.1618 -2.6352 22 6 2.7673 -3.8739 -2.2820 23 6 2.3749 -5.2329 -2.9147 24 6 3.3895 -5.4225 -4.0612 25 6 3.8911 -4.0186 -4.4423 26 6 3.1634 -3.0237 -3.5147 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5143 30 1 5.1339 -1.8131 -1.0153 31 1 5.6489 -1.0902 0.5276 32 1 4.6054 -2.5322 0.5248 33 1 -0.2009 -2.2750 -1.8130 34 1 0.5466 -2.8412 -3.3259 35 1 -3.0547 -3.4170 -3.8401 36 1 3.6146 -3.9932 -1.6067 37 1 1.3589 -5.1915 -3.3074 38 1 2.4700 -6.0364 -2.1843 39 1 2.9029 -5.8902 -4.9171 40 1 4.2234 -6.0380 -3.7238 41 1 4.9682 -3.9526 -4.2891 42 1 3.6486 -3.8053 -5.4834 43 1 3.8334 -2.2156 -3.2214 44 1 2.2763 -2.6234 -4.0055 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107273704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:45 Heat of formation + Delta-G solvation = -16.321316 kcal Electronic energy + Delta-G solvation = -28083.675452 eV Core-core repulsion = 24357.036933 eV Total energy + Delta-G solvation = -3726.638519 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.26074 -38.11255 -36.61009 -35.07516 -34.14370 -33.34037 -32.22186 -31.72010 -28.24499 -27.93036 -27.69853 -27.08208 -26.04728 -22.65380 -21.52561 -20.06353 -19.81359 -19.74320 -18.13284 -17.64626 -16.94246 -16.45086 -15.51363 -15.43396 -15.20078 -14.95371 -14.40260 -14.17787 -13.84810 -13.30938 -13.25784 -12.90213 -12.83243 -12.58082 -12.49411 -12.30254 -12.23038 -11.98374 -11.60586 -11.33437 -11.20992 -11.09280 -10.99032 -10.95958 -10.78692 -10.71667 -10.61161 -10.46646 -10.25652 -10.20629 -9.98102 -9.71139 -9.48349 -9.29882 -9.03773 -8.38405 -7.94338 -6.02567 -4.04221 1.17011 1.64054 2.44455 2.77189 3.35418 3.41865 3.44744 3.85194 4.43008 4.45975 4.49219 4.65906 4.89521 5.08038 5.09803 5.11881 5.24053 5.31408 5.33740 5.48866 5.64657 5.76717 5.91608 5.94160 6.01054 6.02090 6.05976 6.10042 6.11470 6.19796 6.26424 6.29982 6.34536 6.51192 6.68369 6.80181 6.82859 7.15332 7.26416 7.34016 7.49827 7.56617 7.72536 7.95543 8.25434 8.97097 9.58859 11.05709 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.006193 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.934839 B = 4519.785674 C = 5746.490936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.174 3.826 3 N -0.303 5.303 4 N -0.471 5.471 5 H 0.436 0.564 6 C 0.208 3.792 7 C -0.137 4.137 8 C -0.813 4.813 9 S 2.713 3.287 10 O -0.942 6.942 11 O -0.984 6.984 12 N -0.975 5.975 13 C 0.255 3.745 14 C -0.521 4.521 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.273 1.273 22 C 0.152 3.848 23 C -0.138 4.138 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.137 4.137 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.040 0.960 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.249 4.219 1.916 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.004 3.996 3 N -0.125 5.125 4 N -0.175 5.175 5 H 0.280 0.720 6 C 0.073 3.927 7 C -0.195 4.195 8 C -0.909 4.909 9 S 2.801 3.199 10 O -0.932 6.932 11 O -0.974 6.974 12 N -0.813 5.813 13 C 0.133 3.867 14 C -0.560 4.560 15 H 0.082 0.918 16 C -0.139 4.139 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.198 1.198 22 C 0.045 3.955 23 C -0.177 4.177 24 C -0.161 4.161 25 C -0.157 4.157 26 C -0.176 4.176 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.145 0.855 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.934 5.150 2.560 15.074 hybrid contribution 0.103 -0.471 -0.386 0.618 sum 14.036 4.678 2.174 14.954 Atomic orbital electron populations 1.20645 0.85132 1.05228 1.04437 1.21972 0.97049 0.88228 0.92307 1.77322 0.85902 1.22022 1.27248 1.46665 1.07943 1.04887 1.58011 0.71957 1.20946 0.95768 0.84996 0.90971 1.21221 0.92416 1.00708 1.05127 1.31787 0.99547 1.26103 1.33427 1.01220 0.73129 0.72422 0.73098 1.93576 1.36743 1.86416 1.76485 1.93398 1.57886 1.68453 1.77699 1.57442 1.19626 1.73366 1.30904 1.19103 0.77016 0.97363 0.93187 1.21488 1.01307 0.98716 1.34484 0.91819 1.24899 0.97291 0.96454 0.95228 1.69915 1.18456 1.29065 1.35881 0.86602 0.80288 0.83685 0.77513 1.20486 1.21366 1.19776 1.21661 0.87566 0.93198 0.93109 1.22921 1.02337 0.95723 0.96748 1.22090 0.98628 0.96368 0.99017 1.22029 0.98989 0.95369 0.99320 1.22748 1.00576 0.97437 0.96878 0.89338 0.90435 0.87735 0.88825 0.90225 0.85460 0.94258 0.94362 0.92778 0.89284 0.86870 0.92183 0.92066 0.92669 0.92579 0.92179 0.92794 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 9.53 36.01 0.34 -1.28 16 2 C 0.17 3.05 7.21 -82.40 -0.59 2.46 16 3 N -0.30 -4.95 12.70 33.67 0.43 -4.52 16 4 N -0.47 -6.09 7.36 33.48 0.25 -5.84 16 5 H 0.44 3.78 8.96 -182.61 -1.64 2.14 16 6 C 0.21 2.90 7.20 -82.27 -0.59 2.31 16 7 C -0.14 -1.43 10.10 36.01 0.36 -1.06 16 8 C -0.81 -13.99 6.17 -40.01 -0.25 -14.24 16 9 S 2.71 53.12 5.62 -107.50 -0.60 52.52 16 10 O -0.94 -21.57 14.88 -57.17 -0.85 -22.42 16 11 O -0.98 -18.95 13.82 -57.17 -0.79 -19.74 16 12 N -0.98 -19.30 2.84 -106.42 -0.30 -19.61 16 13 C 0.25 5.97 4.58 -5.19 -0.02 5.95 16 14 C -0.52 -13.57 7.14 -34.44 -0.25 -13.81 16 15 H 0.06 1.67 7.36 -52.49 -0.39 1.28 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 18 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 C 0.15 2.57 3.31 -65.89 -0.22 2.35 16 23 C -0.14 -2.39 5.81 -25.03 -0.15 -2.54 16 24 C -0.12 -1.71 6.80 -25.61 -0.17 -1.88 16 25 C -0.12 -1.53 6.80 -25.62 -0.17 -1.71 16 26 C -0.14 -2.04 6.39 -25.07 -0.16 -2.20 16 27 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.10 2.01 5.02 -51.93 -0.26 1.74 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.13 1.57 5.54 -51.93 -0.29 1.28 16 33 H 0.04 0.98 5.75 -51.93 -0.30 0.68 16 34 H 0.04 0.92 6.35 -51.93 -0.33 0.59 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.09 1.37 6.96 -51.93 -0.36 1.00 16 37 H 0.11 2.32 5.43 -51.93 -0.28 2.04 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.38 6.33 -51.93 -0.33 1.05 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -31.88 355.32 -10.30 -42.19 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.53 Total: 4.25 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -1.97 Total: -24.05 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 1.11 Total: -54.15 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -1.64 Total: -42.17 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 53.12 SS G_CDS: -0.60 Total: 52.52 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.88 -10.30 -42.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107273704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.866 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds