Wall clock time and date at job start Tue Mar 31 2020 15:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30844 * 125.89908 * 2 1 4 4 N 1.40087 * 108.20629 * 180.02562 * 3 2 1 5 5 H 0.96992 * 126.03346 * 179.97438 * 4 3 2 6 6 C 1.34943 * 107.92173 * 359.75798 * 4 3 2 7 7 C 1.50702 * 126.12566 * 180.23663 * 6 4 3 8 8 C 1.35315 * 107.75151 * 0.39171 * 6 4 3 9 9 S 1.76197 * 126.04233 * 179.87419 * 8 6 4 10 10 O 1.42103 * 106.40451 * 156.17336 * 9 8 6 11 11 O 1.42098 * 106.40475 * 23.24936 * 9 8 6 12 12 N 1.65599 * 107.21739 * 269.71094 * 9 8 6 13 13 C 1.46497 * 120.00293 * 269.99999 * 12 9 8 14 14 C 1.50701 * 109.47190 * 265.00160 * 13 12 9 15 15 H 1.07998 * 119.99918 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00217 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99890 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00275 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46883 * 89.99700 * 18 16 14 20 20 H 1.48497 * 109.47057 * 209.99680 * 18 16 14 21 21 H 1.48499 * 109.47041 * 330.00133 * 18 16 14 22 22 C 1.46500 * 119.99991 * 90.00235 * 12 9 8 23 23 C 1.54961 * 110.92632 * 126.53959 * 22 12 9 24 24 C 1.54270 * 104.16191 * 156.29508 * 23 22 12 25 25 C 1.53869 * 106.63967 * 336.44607 * 24 23 22 26 26 C 1.54268 * 106.60115 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.46890 * 269.97158 * 1 2 3 28 28 H 1.08997 * 109.47042 * 29.97085 * 1 2 3 29 29 H 1.09000 * 109.46904 * 149.97322 * 1 2 3 30 30 H 1.08998 * 109.47592 * 270.18223 * 7 6 4 31 31 H 1.09004 * 109.46839 * 30.17954 * 7 6 4 32 32 H 1.09002 * 109.47235 * 150.17687 * 7 6 4 33 33 H 1.08998 * 109.47310 * 24.99991 * 13 12 9 34 34 H 1.09000 * 109.47511 * 145.00204 * 13 12 9 35 35 H 0.96990 * 120.00233 * 180.02562 * 17 16 14 36 36 H 1.09001 * 110.67461 * 3.23071 * 22 12 9 37 37 H 1.08997 * 110.47708 * 37.64106 * 23 22 12 38 38 H 1.09002 * 110.53308 * 274.97498 * 23 22 12 39 39 H 1.09002 * 110.03399 * 217.13605 * 24 23 22 40 40 H 1.08995 * 110.02943 * 95.75505 * 24 23 22 41 41 H 1.08999 * 110.03405 * 119.26051 * 25 24 23 42 42 H 1.09001 * 110.03705 * 240.64196 * 25 24 23 43 43 H 1.08997 * 110.48788 * 142.28685 * 26 25 24 44 44 H 1.09000 * 110.48806 * 264.79985 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 1 4.3908 1.2080 -0.0011 6 6 3.6142 -0.7153 0.0045 7 6 4.8350 -1.5988 0.0108 8 6 2.3272 -1.1330 -0.0006 9 16 1.7809 -2.8081 -0.0004 10 8 0.4685 -2.8022 0.5444 11 8 2.8448 -3.5771 0.5438 12 7 1.6285 -3.2743 -1.5821 13 6 0.3549 -3.0872 -2.2814 14 6 -0.4518 -4.3577 -2.2045 15 1 -0.0553 -5.2186 -1.6868 16 6 -1.6962 -4.4211 -2.7950 17 7 -2.1793 -3.3726 -3.4250 18 14 -2.6959 -5.9962 -2.7002 19 1 -3.5484 -5.9690 -1.4845 20 1 -3.5559 -6.1099 -3.9055 21 1 -1.7781 -7.1618 -2.6352 22 6 2.7673 -3.8739 -2.2820 23 6 2.3749 -5.2329 -2.9147 24 6 3.3895 -5.4225 -4.0612 25 6 3.8911 -4.0186 -4.4423 26 6 3.1634 -3.0237 -3.5147 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5143 30 1 5.1339 -1.8131 -1.0153 31 1 5.6489 -1.0902 0.5276 32 1 4.6054 -2.5322 0.5248 33 1 -0.2009 -2.2750 -1.8130 34 1 0.5466 -2.8412 -3.3259 35 1 -3.0547 -3.4170 -3.8401 36 1 3.6146 -3.9932 -1.6067 37 1 1.3589 -5.1915 -3.3074 38 1 2.4700 -6.0364 -2.1843 39 1 2.9029 -5.8902 -4.9171 40 1 4.2234 -6.0380 -3.7238 41 1 4.9682 -3.9526 -4.2891 42 1 3.6486 -3.8053 -5.4834 43 1 3.8334 -2.2156 -3.2214 44 1 2.2763 -2.6234 -4.0055 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107273704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:44 Heat of formation + Delta-G solvation = -38.320908 kcal Electronic energy + Delta-G solvation = -28084.629426 eV Core-core repulsion = 24357.036933 eV Total energy + Delta-G solvation = -3727.592493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.45781 -39.44842 -38.19357 -36.69287 -35.76016 -34.53037 -34.10627 -32.85036 -29.64340 -29.28843 -29.11219 -28.16894 -27.57239 -24.53839 -22.77048 -21.31151 -21.12762 -20.96035 -19.58063 -18.99576 -18.47038 -18.30246 -17.06411 -16.88935 -16.40603 -16.29675 -16.05681 -15.63800 -15.05164 -14.52900 -14.39308 -14.32586 -14.28872 -14.09561 -13.85159 -13.64544 -13.43922 -13.25790 -13.12542 -12.97729 -12.87855 -12.73580 -12.51435 -12.47166 -12.26500 -12.17543 -12.09553 -11.86400 -11.75588 -11.61762 -11.45738 -11.15355 -11.03420 -10.54762 -10.43890 -10.26298 -9.57280 -8.09082 -6.15853 -0.33378 0.49378 1.10121 1.43373 1.46551 1.54369 1.73282 2.33982 2.49359 3.00325 3.21832 3.31196 3.40946 3.74602 3.87200 3.90381 3.99638 4.11703 4.24640 4.35486 4.59774 4.63434 4.66990 4.74368 4.75232 4.79235 4.82619 4.86793 4.98857 5.00498 5.10965 5.17810 5.24720 5.27297 5.35110 5.41157 5.52549 5.59689 5.70545 5.76120 5.92823 6.13783 6.16569 6.24682 6.39248 6.90082 7.49155 8.98341 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.006193 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.934839 B = 4519.785674 C = 5746.490936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.157 3.843 3 N -0.315 5.315 4 N -0.450 5.450 5 H 0.458 0.542 6 C 0.229 3.771 7 C -0.141 4.141 8 C -0.838 4.838 9 S 2.721 3.279 10 O -0.987 6.987 11 O -0.984 6.984 12 N -0.980 5.980 13 C 0.273 3.727 14 C -0.524 4.524 15 H 0.056 0.944 16 C 0.015 3.985 17 N -0.924 5.924 18 Si 0.944 3.056 19 H -0.282 1.282 20 H -0.280 1.280 21 H -0.265 1.265 22 C 0.142 3.858 23 C -0.145 4.145 24 C -0.117 4.117 25 C -0.113 4.113 26 C -0.134 4.134 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.019 0.981 34 H 0.028 0.972 35 H 0.263 0.737 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.632 4.418 1.753 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.013 4.013 3 N -0.137 5.137 4 N -0.157 5.157 5 H 0.307 0.693 6 C 0.092 3.908 7 C -0.198 4.198 8 C -0.938 4.938 9 S 2.813 3.187 10 O -0.977 6.977 11 O -0.974 6.974 12 N -0.817 5.817 13 C 0.150 3.850 14 C -0.563 4.563 15 H 0.074 0.926 16 C -0.184 4.184 17 N -0.565 5.565 18 Si 0.770 3.230 19 H -0.208 1.208 20 H -0.206 1.206 21 H -0.189 1.189 22 C 0.036 3.964 23 C -0.185 4.185 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.173 4.173 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.342 5.322 2.392 18.297 hybrid contribution -0.830 -0.476 -0.281 0.997 sum 16.512 4.846 2.111 17.338 Atomic orbital electron populations 1.20586 0.85790 1.04472 1.04707 1.21999 0.97213 0.88829 0.93211 1.77244 0.87293 1.21784 1.27372 1.46604 1.07628 1.04992 1.56463 0.69334 1.21396 0.95743 0.85520 0.88173 1.21444 0.91800 0.99498 1.07087 1.31340 1.01356 1.24268 1.36840 1.00592 0.72337 0.73171 0.72621 1.93520 1.39288 1.87459 1.77439 1.93394 1.57214 1.69231 1.77565 1.57312 1.19294 1.74250 1.30813 1.18613 0.78301 0.95518 0.92579 1.21753 1.01659 0.99360 1.33559 0.92602 1.25596 0.98427 0.99103 0.95299 1.70008 1.18839 1.30631 1.36973 0.85769 0.79021 0.80822 0.77412 1.20815 1.20571 1.18930 1.22004 0.87048 0.93199 0.94193 1.22873 1.01399 0.96152 0.98044 1.22068 0.98326 0.97710 0.97448 1.22035 1.00549 0.93587 0.98899 1.22708 1.00154 0.98376 0.96052 0.88645 0.88905 0.90667 0.86266 0.86073 0.87140 0.96307 0.95450 0.92762 0.87055 0.90759 0.92637 0.92295 0.90195 0.89313 0.91800 0.90271 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.43 9.53 71.24 0.68 -2.75 16 2 C 0.16 5.49 7.21 43.10 0.31 5.80 16 3 N -0.31 -9.80 12.70 -47.38 -0.60 -10.41 16 4 N -0.45 -10.22 7.36 -48.00 -0.35 -10.57 16 5 H 0.46 6.03 8.96 -213.34 -1.91 4.12 16 6 C 0.23 5.72 7.20 41.41 0.30 6.01 16 7 C -0.14 -2.31 10.10 71.24 0.72 -1.59 16 8 C -0.84 -28.28 6.17 21.99 0.14 -28.14 16 9 S 2.72 108.10 5.62 -56.49 -0.32 107.78 16 10 O -0.99 -47.42 14.88 -128.00 -1.90 -49.32 16 11 O -0.98 -37.22 13.82 -128.00 -1.77 -38.99 16 12 N -0.98 -39.61 2.84 -490.60 -1.39 -41.00 16 13 C 0.27 13.46 4.58 85.63 0.39 13.85 16 14 C -0.52 -28.50 7.14 25.60 0.18 -28.32 16 15 H 0.06 3.05 7.36 -2.91 -0.02 3.03 16 16 C 0.01 0.82 5.46 84.65 0.46 1.28 16 17 N -0.92 -53.44 13.29 21.45 0.28 -53.15 16 18 Si 0.94 44.28 29.54 68.60 2.03 46.31 16 19 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 22 C 0.14 4.66 3.31 46.31 0.15 4.81 16 23 C -0.15 -5.02 5.81 31.70 0.18 -4.84 16 24 C -0.12 -3.02 6.80 31.32 0.21 -2.81 16 25 C -0.11 -2.56 6.80 31.32 0.21 -2.35 16 26 C -0.13 -3.75 6.39 31.67 0.20 -3.55 16 27 H 0.10 3.11 8.14 -2.39 -0.02 3.10 16 28 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.07 3.12 5.02 -2.39 -0.01 3.10 16 30 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 2.34 5.54 -2.39 -0.01 2.33 16 33 H 0.02 1.01 5.75 -2.39 -0.01 1.00 16 34 H 0.03 1.40 6.35 -2.39 -0.02 1.39 16 35 H 0.26 14.49 8.31 -92.72 -0.77 13.72 16 36 H 0.11 3.15 6.96 -2.39 -0.02 3.14 16 37 H 0.07 3.16 5.43 -2.39 -0.01 3.15 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 1.77 6.33 -2.39 -0.02 1.76 16 Total: -1.00 -72.25 355.32 -0.76 -73.01 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -0.88 Total: 18.92 kcal Atomic # 6 Polarization: -46.73 SS G_CDS: 4.15 Total: -42.58 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -2.06 Total: -115.13 kcal Atomic # 8 Polarization: -84.63 SS G_CDS: -3.67 Total: -88.31 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 108.10 SS G_CDS: -0.32 Total: 107.78 kcal Total: -72.25 -0.76 -73.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107273704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.687 kcal (2) G-P(sol) polarization free energy of solvation -72.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds