Wall clock time and date at job start Tue Mar 31 2020 15:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31814 * 119.12233 * 2 1 4 4 C 1.32314 * 120.82071 * 180.02562 * 3 2 1 5 5 C 1.38620 * 119.10165 * 359.97438 * 4 3 2 6 6 C 1.38579 * 118.40083 * 0.27741 * 5 4 3 7 7 C 1.50699 * 120.44888 * 179.71911 * 6 5 4 8 8 N 1.46497 * 109.46819 * 95.00444 * 7 6 5 9 9 C 1.34782 * 120.00090 * 179.97438 * 8 7 6 10 10 O 1.21278 * 119.99710 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00133 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.46862 * 180.02562 * 11 9 8 13 13 C 1.38308 * 119.92772 * 269.72707 * 12 11 9 14 14 C 1.38105 * 120.06339 * 179.72828 * 13 12 11 15 15 C 1.38877 * 119.93196 * 0.57235 * 14 13 12 16 16 O 1.35741 * 120.06934 * 179.68404 * 15 14 13 17 17 C 1.34833 * 117.00172 * 174.48404 * 16 15 14 18 18 H 1.07997 * 120.00117 * 5.05594 * 17 16 15 19 19 C 1.38657 * 120.00349 * 185.05669 * 17 16 15 20 20 N 1.31550 * 120.00136 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99785 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46833 * 90.00075 * 21 19 17 23 23 H 1.48498 * 109.47276 * 210.00284 * 21 19 17 24 24 H 1.48504 * 109.47057 * 330.00322 * 21 19 17 25 25 C 1.38878 * 119.86189 * 359.70299 * 15 14 13 26 26 C 1.38101 * 119.93258 * 359.97438 * 25 15 14 27 27 N 1.31779 * 119.12659 * 180.02562 * 2 1 3 28 28 H 1.09009 * 109.47272 * 90.00268 * 1 2 3 29 29 H 1.09001 * 109.47184 * 209.99758 * 1 2 3 30 30 H 1.09004 * 109.47803 * 330.00187 * 1 2 3 31 31 H 1.08000 * 120.45128 * 180.02562 * 4 3 2 32 32 H 1.08000 * 120.79950 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.47188 * 215.00174 * 7 6 5 34 34 H 1.08997 * 109.47199 * 335.00201 * 7 6 5 35 35 H 0.97003 * 120.00375 * 0.02562 * 8 7 6 36 36 H 1.09000 * 109.47431 * 300.00697 * 11 9 8 37 37 H 1.09007 * 109.46804 * 60.00265 * 11 9 8 38 38 H 1.08000 * 119.96601 * 359.97438 * 13 12 11 39 39 H 1.08001 * 120.03276 * 180.27422 * 14 13 12 40 40 H 0.97000 * 120.00092 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.03886 * 179.97438 * 25 15 14 42 42 H 1.08001 * 119.96915 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4710 1.1907 -0.0005 5 6 4.1808 0.0000 -0.0005 6 6 3.4712 -1.1903 -0.0059 7 6 4.1961 -2.5115 -0.0125 8 7 4.3260 -3.0040 1.3611 9 6 4.9442 -4.1775 1.6006 10 8 5.3934 -4.8254 0.6791 11 6 5.0782 -4.6839 3.0137 12 6 5.8030 -6.0052 3.0071 13 6 5.0875 -7.1842 2.9034 14 6 5.7493 -8.3963 2.8914 15 6 7.1337 -8.4311 2.9956 16 8 7.7865 -9.6212 2.9905 17 6 9.1341 -9.5802 2.9794 18 1 9.6462 -8.6325 3.0574 19 6 9.8627 -10.7546 2.8679 20 7 11.1775 -10.7146 2.8576 21 14 8.9770 -12.3939 2.7338 22 1 8.7266 -12.7056 1.3036 23 1 9.8176 -13.4612 3.3333 24 1 7.6827 -12.3179 3.4579 25 6 7.8488 -7.2456 3.1052 26 6 7.1818 -6.0364 3.1099 27 7 2.1484 -1.1512 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3635 0.8900 0.5138 31 1 3.9905 2.1376 -0.0001 32 1 5.2608 0.0000 -0.0005 33 1 3.6326 -3.2322 -0.6052 34 1 5.1873 -2.3799 -0.4465 35 1 3.9664 -2.4860 2.0982 36 1 5.6423 -3.9634 3.6059 37 1 4.0872 -4.8149 3.4482 38 1 4.0105 -7.1567 2.8277 39 1 5.1903 -9.3165 2.8060 40 1 11.6872 -11.5363 2.7800 41 1 8.9255 -7.2693 3.1868 42 1 7.7374 -5.1142 3.1956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110235614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:34 Heat of formation + Delta-G solvation = 10.462492 kcal Electronic energy + Delta-G solvation = -25383.728476 eV Core-core repulsion = 21522.807439 eV Total energy + Delta-G solvation = -3860.921038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.63382 -39.85122 -38.92049 -36.74278 -35.72168 -33.98881 -33.38473 -32.48070 -31.57056 -30.20550 -29.17439 -28.18380 -26.45538 -24.85072 -23.86914 -22.57371 -22.06526 -21.12969 -20.12605 -18.19678 -17.86306 -17.58903 -17.18033 -16.66434 -16.12969 -15.63064 -15.51223 -15.44642 -14.76279 -14.53666 -14.11400 -13.88592 -13.85783 -13.64457 -13.51116 -13.26567 -13.15943 -13.01783 -12.78288 -12.63981 -12.39283 -12.17050 -11.63051 -11.39376 -11.29052 -11.27265 -10.91714 -10.73364 -10.64584 -10.12726 -10.07576 -9.79423 -9.69498 -9.35290 -9.30115 -8.82977 -8.20099 -7.27587 -6.38570 -4.04836 0.31805 0.49186 2.17939 2.19400 2.68883 2.94839 3.24467 3.28291 3.29322 3.42819 3.44370 3.56512 3.91101 4.26746 4.39990 4.49375 4.54170 4.82657 4.86493 4.89609 4.95856 5.05785 5.07936 5.14085 5.20783 5.24570 5.38000 5.41495 5.46787 5.61351 5.68300 5.78871 5.89420 6.13881 6.16714 6.36494 6.49844 6.60021 6.82945 7.05202 7.25283 7.31735 7.33893 7.58465 7.65200 7.83815 8.07299 8.21197 8.96896 9.59773 10.69115 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.032999 B = 0.001854 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.317276 B =15101.990175 C =15433.665713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.318 3.682 3 N -0.518 5.518 4 C 0.153 3.847 5 C -0.218 4.218 6 C 0.164 3.836 7 C 0.170 3.830 8 N -0.734 5.734 9 C 0.512 3.488 10 O -0.516 6.516 11 C -0.079 4.079 12 C -0.163 4.163 13 C -0.061 4.061 14 C -0.191 4.191 15 C 0.162 3.838 16 O -0.218 6.218 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.220 4.220 26 C -0.058 4.058 27 N -0.505 5.505 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.172 0.828 32 H 0.152 0.848 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.399 0.601 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.279 0.721 41 H 0.133 0.867 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.034 23.962 -2.774 30.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 N -0.233 5.233 4 C -0.013 4.013 5 C -0.240 4.240 6 C 0.017 3.983 7 C 0.046 3.954 8 N -0.389 5.389 9 C 0.299 3.701 10 O -0.389 6.389 11 C -0.119 4.119 12 C -0.164 4.164 13 C -0.080 4.080 14 C -0.210 4.210 15 C 0.110 3.890 16 O -0.123 6.123 17 C -0.464 4.464 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.239 4.239 26 C -0.076 4.076 27 N -0.220 5.220 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.189 0.811 32 H 0.170 0.830 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.233 0.767 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.548 23.078 -3.475 29.811 hybrid contribution 0.789 -0.224 0.139 0.832 sum -17.759 22.854 -3.336 29.134 Atomic orbital electron populations 1.20601 0.85425 1.04379 1.04097 1.23351 0.98355 0.83152 0.90065 1.68291 1.10275 1.30534 1.14205 1.23309 0.89600 0.98776 0.89612 1.22865 1.03355 0.94004 1.03793 1.21712 0.89739 0.95622 0.91229 1.20099 0.99608 0.89985 0.85706 1.45966 1.61500 1.23657 1.07772 1.21068 0.76935 0.79634 0.92433 1.90768 1.46262 1.55919 1.45959 1.20415 1.02180 0.96629 0.92707 1.18686 0.93491 0.92403 1.11799 1.20414 0.98185 0.91381 0.97975 1.20154 0.91702 0.97957 1.11208 1.19123 0.91475 0.85589 0.92805 1.83569 1.21859 1.25982 1.80883 1.20772 0.76816 0.97215 1.51596 0.87629 1.24467 0.94875 0.98997 0.95705 1.69644 1.04628 1.29540 1.48012 0.86179 0.80116 0.81482 0.79104 1.19886 1.20823 1.18368 1.21222 1.01052 0.91834 1.09765 1.20562 0.93060 0.96812 0.97185 1.68144 1.09437 1.30710 1.13739 0.89448 0.89390 0.89484 0.81086 0.83022 0.89210 0.89247 0.76741 0.88786 0.88763 0.87157 0.86533 0.91096 0.84956 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.48 10.32 36.00 0.37 -0.11 16 2 C 0.32 2.72 7.64 -157.19 -1.20 1.52 16 3 N -0.52 -4.35 10.33 -10.72 -0.11 -4.46 16 4 C 0.15 0.96 11.31 -17.20 -0.19 0.76 16 5 C -0.22 -1.36 9.84 -39.31 -0.39 -1.75 16 6 C 0.16 1.35 6.19 -82.25 -0.51 0.85 16 7 C 0.17 1.55 6.03 -5.20 -0.03 1.52 16 8 N -0.73 -6.85 5.55 -61.47 -0.34 -7.19 16 9 C 0.51 6.65 7.82 -10.98 -0.09 6.56 16 10 O -0.52 -9.26 16.03 5.56 0.09 -9.17 16 11 C -0.08 -0.93 5.83 -29.04 -0.17 -1.10 16 12 C -0.16 -2.71 4.38 -104.57 -0.46 -3.17 16 13 C -0.06 -1.08 9.69 -39.60 -0.38 -1.46 16 14 C -0.19 -3.93 9.99 -39.39 -0.39 -4.32 16 15 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 16 O -0.22 -5.89 8.59 0.07 0.00 -5.89 16 17 C -0.39 -11.16 9.95 30.89 0.31 -10.85 16 18 H 0.11 3.09 5.44 -52.49 -0.29 2.81 16 19 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 20 N -0.88 -25.74 13.96 55.48 0.77 -24.97 16 21 Si 0.91 22.05 28.62 -169.99 -4.86 17.19 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 25 C -0.22 -4.88 9.17 -39.39 -0.36 -5.24 16 26 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 27 N -0.51 -4.77 10.27 -6.99 -0.07 -4.85 16 28 H 0.09 0.41 8.14 -51.92 -0.42 -0.02 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.17 0.51 8.06 -52.49 -0.42 0.08 16 32 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.78 8.06 -51.93 -0.42 0.36 16 35 H 0.40 2.80 8.46 -40.82 -0.35 2.45 16 36 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.13 3.07 5.64 -52.49 -0.30 2.77 16 42 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -35.17 369.60 -8.32 -43.49 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.13 Total: 3.24 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -4.24 Total: -12.95 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.25 Total: -41.47 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.09 Total: -15.06 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.86 Total: 17.19 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.17 -8.32 -43.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110235614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.952 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds