Wall clock time and date at job start Tue Mar 31 2020 15:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31814 * 119.12233 * 2 1 4 4 C 1.32314 * 120.82071 * 180.02562 * 3 2 1 5 5 C 1.38620 * 119.10165 * 359.97438 * 4 3 2 6 6 C 1.38579 * 118.40083 * 0.27741 * 5 4 3 7 7 C 1.50699 * 120.44888 * 179.71911 * 6 5 4 8 8 N 1.46497 * 109.46819 * 95.00444 * 7 6 5 9 9 C 1.34782 * 120.00090 * 179.97438 * 8 7 6 10 10 O 1.21278 * 119.99710 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00133 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.46862 * 180.02562 * 11 9 8 13 13 C 1.38308 * 119.92772 * 269.72707 * 12 11 9 14 14 C 1.38105 * 120.06339 * 179.72828 * 13 12 11 15 15 C 1.38877 * 119.93196 * 0.57235 * 14 13 12 16 16 O 1.35741 * 120.06934 * 179.68404 * 15 14 13 17 17 C 1.34833 * 117.00172 * 174.48404 * 16 15 14 18 18 H 1.07997 * 120.00117 * 5.05594 * 17 16 15 19 19 C 1.38657 * 120.00349 * 185.05669 * 17 16 15 20 20 N 1.31550 * 120.00136 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99785 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46833 * 90.00075 * 21 19 17 23 23 H 1.48498 * 109.47276 * 210.00284 * 21 19 17 24 24 H 1.48504 * 109.47057 * 330.00322 * 21 19 17 25 25 C 1.38878 * 119.86189 * 359.70299 * 15 14 13 26 26 C 1.38101 * 119.93258 * 359.97438 * 25 15 14 27 27 N 1.31779 * 119.12659 * 180.02562 * 2 1 3 28 28 H 1.09009 * 109.47272 * 90.00268 * 1 2 3 29 29 H 1.09001 * 109.47184 * 209.99758 * 1 2 3 30 30 H 1.09004 * 109.47803 * 330.00187 * 1 2 3 31 31 H 1.08000 * 120.45128 * 180.02562 * 4 3 2 32 32 H 1.08000 * 120.79950 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.47188 * 215.00174 * 7 6 5 34 34 H 1.08997 * 109.47199 * 335.00201 * 7 6 5 35 35 H 0.97003 * 120.00375 * 0.02562 * 8 7 6 36 36 H 1.09000 * 109.47431 * 300.00697 * 11 9 8 37 37 H 1.09007 * 109.46804 * 60.00265 * 11 9 8 38 38 H 1.08000 * 119.96601 * 359.97438 * 13 12 11 39 39 H 1.08001 * 120.03276 * 180.27422 * 14 13 12 40 40 H 0.97000 * 120.00092 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.03886 * 179.97438 * 25 15 14 42 42 H 1.08001 * 119.96915 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4710 1.1907 -0.0005 5 6 4.1808 0.0000 -0.0005 6 6 3.4712 -1.1903 -0.0059 7 6 4.1961 -2.5115 -0.0125 8 7 4.3260 -3.0040 1.3611 9 6 4.9442 -4.1775 1.6006 10 8 5.3934 -4.8254 0.6791 11 6 5.0782 -4.6839 3.0137 12 6 5.8030 -6.0052 3.0071 13 6 5.0875 -7.1842 2.9034 14 6 5.7493 -8.3963 2.8914 15 6 7.1337 -8.4311 2.9956 16 8 7.7865 -9.6212 2.9905 17 6 9.1341 -9.5802 2.9794 18 1 9.6462 -8.6325 3.0574 19 6 9.8627 -10.7546 2.8679 20 7 11.1775 -10.7146 2.8576 21 14 8.9770 -12.3939 2.7338 22 1 8.7266 -12.7056 1.3036 23 1 9.8176 -13.4612 3.3333 24 1 7.6827 -12.3179 3.4579 25 6 7.8488 -7.2456 3.1052 26 6 7.1818 -6.0364 3.1099 27 7 2.1484 -1.1512 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3635 0.8900 0.5138 31 1 3.9905 2.1376 -0.0001 32 1 5.2608 0.0000 -0.0005 33 1 3.6326 -3.2322 -0.6052 34 1 5.1873 -2.3799 -0.4465 35 1 3.9664 -2.4860 2.0982 36 1 5.6423 -3.9634 3.6059 37 1 4.0872 -4.8149 3.4482 38 1 4.0105 -7.1567 2.8277 39 1 5.1903 -9.3165 2.8060 40 1 11.6872 -11.5363 2.7800 41 1 8.9255 -7.2693 3.1868 42 1 7.7374 -5.1142 3.1956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110235614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:33 Heat of formation + Delta-G solvation = -14.027761 kcal Electronic energy + Delta-G solvation = -25384.790453 eV Core-core repulsion = 21522.807439 eV Total energy + Delta-G solvation = -3861.983015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.18897 -41.12046 -40.42914 -38.35076 -36.56432 -34.55998 -34.51376 -34.08522 -32.93460 -31.79548 -29.78757 -29.08781 -27.83253 -26.54941 -24.42812 -23.70207 -23.22880 -22.42701 -21.33361 -19.81569 -19.12205 -18.76824 -18.31313 -17.54408 -16.84847 -16.72465 -16.43123 -16.17015 -16.09427 -15.85236 -15.69377 -15.57995 -15.13398 -14.74668 -14.57104 -14.33388 -14.22953 -14.07614 -13.90955 -13.75490 -13.48399 -13.19300 -13.04219 -12.77175 -12.51154 -12.40784 -12.32073 -11.93413 -11.91117 -11.88342 -11.27155 -11.02645 -10.86553 -10.43749 -10.32620 -10.18068 -9.77660 -8.97545 -8.50098 -6.22416 -0.23534 -0.02435 0.59774 0.62943 1.30267 1.34991 1.51325 1.69550 2.15221 2.28003 2.69556 2.77434 2.86230 3.06674 3.08794 3.19472 3.40542 3.82768 3.87720 4.04861 4.09950 4.13541 4.19839 4.33095 4.46405 4.48774 4.55048 4.58655 4.63294 4.70304 4.70533 4.82665 4.90040 4.99516 5.05256 5.26520 5.30998 5.38235 5.42121 5.57648 5.74817 5.80615 5.91889 5.97364 6.25371 6.51087 6.84236 7.04000 7.27685 7.59278 8.61597 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.032999 B = 0.001854 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.317276 B =15101.990175 C =15433.665713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.302 3.698 3 N -0.535 5.535 4 C 0.152 3.848 5 C -0.209 4.209 6 C 0.152 3.848 7 C 0.174 3.826 8 N -0.713 5.713 9 C 0.516 3.484 10 O -0.574 6.574 11 C -0.078 4.078 12 C -0.138 4.138 13 C -0.060 4.060 14 C -0.194 4.194 15 C 0.117 3.883 16 O -0.247 6.247 17 C -0.399 4.399 18 H 0.080 0.920 19 C 0.008 3.992 20 N -0.923 5.923 21 Si 0.972 3.028 22 H -0.268 1.268 23 H -0.265 1.265 24 H -0.263 1.263 25 C -0.239 4.239 26 C -0.063 4.063 27 N -0.528 5.528 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.205 0.795 32 H 0.176 0.824 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.152 0.848 39 H 0.127 0.873 40 H 0.285 0.715 41 H 0.107 0.893 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.805 26.523 -2.339 33.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.035 3.965 3 N -0.250 5.250 4 C -0.014 4.014 5 C -0.231 4.231 6 C 0.005 3.995 7 C 0.049 3.951 8 N -0.367 5.367 9 C 0.304 3.696 10 O -0.452 6.452 11 C -0.117 4.117 12 C -0.139 4.139 13 C -0.078 4.078 14 C -0.214 4.214 15 C 0.069 3.931 16 O -0.154 6.154 17 C -0.476 4.476 18 H 0.097 0.903 19 C -0.190 4.190 20 N -0.564 5.564 21 Si 0.794 3.206 22 H -0.193 1.193 23 H -0.189 1.189 24 H -0.187 1.187 25 C -0.258 4.258 26 C -0.081 4.081 27 N -0.244 5.244 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.221 0.779 32 H 0.194 0.806 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.251 0.749 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.170 0.830 39 H 0.145 0.855 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.372 25.718 -3.012 33.574 hybrid contribution 1.436 -0.608 -0.016 1.559 sum -19.936 25.110 -3.028 32.204 Atomic orbital electron populations 1.20670 0.84030 1.04929 1.04694 1.23795 0.99442 0.83054 0.90166 1.68357 1.11451 1.30496 1.14728 1.23914 0.89086 1.00167 0.88233 1.23101 1.04506 0.93127 1.02375 1.21633 0.89700 0.95750 0.92383 1.20032 0.99731 0.90150 0.85140 1.45736 1.59876 1.22557 1.08579 1.21157 0.76348 0.79939 0.92141 1.90775 1.49062 1.57787 1.47607 1.20543 1.04148 0.94308 0.92703 1.19289 0.92896 0.94879 1.06811 1.20953 1.00310 0.90369 0.96144 1.20503 0.90369 1.00001 1.10481 1.19687 0.92963 0.85313 0.95186 1.83508 1.20527 1.27644 1.83771 1.20712 0.78094 0.96664 1.52099 0.90252 1.25294 0.95638 1.02457 0.95580 1.69727 1.05876 1.30721 1.50076 0.85208 0.78804 0.77385 0.79228 1.19311 1.18933 1.18702 1.21261 1.00167 0.93314 1.11047 1.20926 0.94419 0.96335 0.96440 1.68116 1.10148 1.31413 1.14733 0.88772 0.89145 0.88576 0.77867 0.80607 0.91082 0.88759 0.74941 0.85232 0.84940 0.83034 0.85511 0.90580 0.87522 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.32 71.23 0.74 -0.09 16 2 C 0.30 4.67 7.64 138.75 1.06 5.73 16 3 N -0.54 -7.83 10.33 -187.84 -1.94 -9.77 16 4 C 0.15 1.44 11.31 84.71 0.96 2.40 16 5 C -0.21 -1.97 9.84 22.44 0.22 -1.75 16 6 C 0.15 2.17 6.19 42.56 0.26 2.43 16 7 C 0.17 2.82 6.03 85.63 0.52 3.34 16 8 N -0.71 -10.89 5.55 -466.79 -2.59 -13.48 16 9 C 0.52 11.58 7.82 87.66 0.69 12.27 16 10 O -0.57 -19.56 16.03 -3.02 -0.05 -19.60 16 11 C -0.08 -1.42 5.83 29.10 0.17 -1.25 16 12 C -0.14 -4.14 4.38 -19.83 -0.09 -4.23 16 13 C -0.06 -1.92 9.69 22.25 0.22 -1.71 16 14 C -0.19 -7.88 9.99 22.39 0.22 -7.65 16 15 C 0.12 5.79 6.65 22.58 0.15 5.94 16 16 O -0.25 -14.02 8.59 -22.67 -0.19 -14.21 16 17 C -0.40 -24.41 9.95 67.92 0.68 -23.73 16 18 H 0.08 5.08 5.44 -2.91 -0.02 5.06 16 19 C 0.01 0.51 5.49 84.84 0.47 0.97 16 20 N -0.92 -56.43 13.96 21.61 0.30 -56.13 16 21 Si 0.97 46.87 28.62 68.60 1.96 48.83 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 25 C -0.24 -11.03 9.17 22.39 0.21 -10.82 16 26 C -0.06 -2.26 9.69 22.25 0.22 -2.04 16 27 N -0.53 -9.11 10.27 -176.03 -1.81 -10.92 16 28 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.20 0.42 8.06 -2.91 -0.02 0.39 16 32 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 33 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.09 1.46 8.06 -2.39 -0.02 1.44 16 35 H 0.41 4.03 8.46 -92.71 -0.78 3.25 16 36 H 0.13 1.58 8.08 -2.39 -0.02 1.56 16 37 H 0.13 1.55 8.08 -2.38 -0.02 1.53 16 38 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 39 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 40 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 41 H 0.11 5.39 5.64 -2.91 -0.02 5.38 16 42 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -82.55 369.60 2.64 -79.91 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.28 Total: 15.56 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 6.67 Total: -20.19 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -6.04 Total: -90.30 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.24 Total: -33.82 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.96 Total: 48.83 kcal Total: -82.55 2.64 -79.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110235614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.885 kcal (2) G-P(sol) polarization free energy of solvation -82.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds