Wall clock time and date at job start Tue Mar 31 2020 15:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31817 * 119.12216 * 2 1 4 4 C 1.32314 * 120.81768 * 180.02562 * 3 2 1 5 5 C 1.38626 * 119.10430 * 359.97438 * 4 3 2 6 6 C 1.38573 * 118.39712 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.44450 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47384 * 95.00052 * 7 6 5 9 9 C 1.34774 * 120.00673 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99274 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00690 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.47400 * 180.02562 * 11 9 8 13 13 C 1.38320 * 119.96630 * 269.72379 * 12 11 9 14 14 C 1.38280 * 120.14137 * 179.76617 * 13 12 11 15 15 C 1.38119 * 120.06462 * 0.51091 * 14 13 12 16 16 C 1.38859 * 119.93050 * 359.74410 * 15 14 13 17 17 O 1.35755 * 120.06449 * 179.97438 * 16 15 14 18 18 C 1.34830 * 117.00143 * 354.48010 * 17 16 15 19 19 H 1.07997 * 119.99848 * 5.06700 * 18 17 16 20 20 C 1.38655 * 119.99429 * 185.05796 * 18 17 16 21 21 N 1.31547 * 120.00658 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99469 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47257 * 90.00292 * 22 20 18 24 24 H 1.48498 * 109.47321 * 210.00257 * 22 20 18 25 25 H 1.48497 * 109.47439 * 330.00413 * 22 20 18 26 26 C 1.38079 * 119.96482 * 89.99953 * 12 11 9 27 27 N 1.31779 * 119.12639 * 180.30022 * 2 1 3 28 28 H 1.08995 * 109.47284 * 89.99998 * 1 2 3 29 29 H 1.09000 * 109.46858 * 210.00028 * 1 2 3 30 30 H 1.09000 * 109.47155 * 329.99785 * 1 2 3 31 31 H 1.07997 * 120.44940 * 180.02562 * 4 3 2 32 32 H 1.08000 * 120.79701 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47276 * 215.00415 * 7 6 5 34 34 H 1.09001 * 109.47362 * 335.00136 * 7 6 5 35 35 H 0.97007 * 119.99845 * 0.02562 * 8 7 6 36 36 H 1.08999 * 109.46513 * 300.00185 * 11 9 8 37 37 H 1.09001 * 109.47063 * 59.99657 * 11 9 8 38 38 H 1.08004 * 119.93071 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.96527 * 180.25265 * 14 13 12 40 40 H 1.07996 * 120.03539 * 179.76692 * 15 14 13 41 41 H 0.97001 * 120.00213 * 180.02562 * 21 20 18 42 42 H 1.07993 * 120.03590 * 359.95193 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1907 -0.0005 5 6 4.1809 -0.0001 -0.0005 6 6 3.4713 -1.1903 0.0006 7 6 4.1962 -2.5115 0.0012 8 7 4.3261 -2.9966 1.3774 9 6 4.9443 -4.1687 1.6234 10 8 5.3935 -4.8216 0.7052 11 6 5.0774 -4.6680 3.0390 12 6 5.8024 -5.9892 3.0396 13 6 5.0879 -7.1694 2.9415 14 6 5.7498 -8.3835 2.9369 15 6 7.1265 -8.4214 3.0409 16 6 7.8463 -7.2385 3.1449 17 8 9.1995 -7.2726 3.2478 18 6 9.7746 -8.4871 3.3584 19 1 9.1713 -9.3794 3.2801 20 6 11.1406 -8.5903 3.5725 21 7 11.8755 -7.5034 3.6682 22 14 11.9375 -10.2729 3.7249 23 1 12.3638 -10.7423 2.3821 24 1 13.1219 -10.1809 4.6160 25 1 10.9605 -11.2333 4.2979 26 6 7.1789 -6.0204 3.1439 27 7 2.1484 -1.1511 -0.0060 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 3.9906 2.1375 -0.0001 32 1 5.2609 0.0000 -0.0013 33 1 3.6328 -3.2354 -0.5876 34 1 5.1874 -2.3824 -0.4335 35 1 3.9665 -2.4746 2.1117 36 1 5.6410 -3.9444 3.6279 37 1 4.0861 -4.7969 3.4735 38 1 4.0109 -7.1426 2.8649 39 1 5.1894 -9.3031 2.8560 40 1 7.6427 -9.3700 3.0411 41 1 12.8312 -7.5757 3.8176 42 1 7.7360 -5.0987 3.2242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119721544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:39 Heat of formation + Delta-G solvation = 9.039440 kcal Electronic energy + Delta-G solvation = -25486.752734 eV Core-core repulsion = 21625.769988 eV Total energy + Delta-G solvation = -3860.982746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.58680 -39.80305 -38.74773 -36.53785 -35.67245 -33.94366 -33.34534 -32.35361 -31.93918 -29.32719 -29.04892 -28.20547 -26.47874 -25.17338 -23.85520 -22.57075 -21.64385 -21.21178 -20.25087 -18.15720 -17.78866 -17.37866 -16.89032 -16.54925 -16.01525 -15.58584 -15.52173 -15.31452 -14.95556 -14.46510 -14.34499 -13.95210 -13.78964 -13.51874 -13.38868 -13.25866 -13.03519 -12.95254 -12.74282 -12.51339 -12.36377 -11.78804 -11.49409 -11.34892 -11.23655 -11.23005 -10.79339 -10.74666 -10.57480 -10.41297 -10.03400 -9.75426 -9.66434 -9.28919 -9.25455 -8.79211 -8.01907 -7.16679 -6.39723 -3.98577 0.36596 0.53752 2.13464 2.44460 2.73092 2.98888 3.16451 3.16674 3.21537 3.33828 3.48407 3.60911 3.96195 4.00812 4.45193 4.57910 4.59703 4.87492 4.90069 4.96662 5.09102 5.11056 5.12070 5.15397 5.27234 5.39544 5.46039 5.49548 5.53529 5.70522 5.79592 5.93861 5.98509 6.18459 6.22702 6.38806 6.54434 6.70646 6.96801 7.12348 7.31388 7.34302 7.42390 7.49154 7.62828 7.87998 8.05536 8.24648 9.06198 9.77407 10.78613 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026004 B = 0.001969 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.487867 B =14214.722044 C =14965.667690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.317 3.683 3 N -0.518 5.518 4 C 0.153 3.847 5 C -0.217 4.217 6 C 0.164 3.836 7 C 0.171 3.829 8 N -0.733 5.733 9 C 0.517 3.483 10 O -0.514 6.514 11 C -0.092 4.092 12 C -0.034 4.034 13 C -0.196 4.196 14 C -0.075 4.075 15 C -0.230 4.230 16 C 0.154 3.846 17 O -0.180 6.180 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.174 4.174 27 N -0.505 5.505 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.172 0.828 32 H 0.153 0.847 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.399 0.601 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.396 15.707 -4.351 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 N -0.233 5.233 4 C -0.013 4.013 5 C -0.239 4.239 6 C 0.017 3.983 7 C 0.046 3.954 8 N -0.388 5.388 9 C 0.304 3.696 10 O -0.388 6.388 11 C -0.131 4.131 12 C -0.034 4.034 13 C -0.215 4.215 14 C -0.093 4.093 15 C -0.249 4.249 16 C 0.101 3.899 17 O -0.084 6.084 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.194 4.194 27 N -0.220 5.220 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.189 0.811 32 H 0.171 0.829 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.233 0.767 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.079 0.921 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.621 15.430 -5.009 25.459 hybrid contribution 1.237 -0.511 0.295 1.371 sum -18.384 14.919 -4.714 24.141 Atomic orbital electron populations 1.20594 0.85450 1.04355 1.04058 1.23346 0.98339 0.83171 0.90157 1.68290 1.10282 1.30526 1.14212 1.23313 0.89582 0.98791 0.89609 1.22882 1.03429 0.93986 1.03623 1.21701 0.89722 0.95623 0.91259 1.20100 0.99690 0.90047 0.85528 1.45908 1.61466 1.23624 1.07795 1.20804 0.77000 0.79781 0.92027 1.90779 1.46111 1.55639 1.46226 1.20573 1.02441 0.96808 0.93328 1.18640 0.92544 0.92467 0.99792 1.20358 0.98167 0.92140 1.10821 1.20681 0.93872 0.96809 0.97949 1.21178 0.94244 0.98617 1.10904 1.19276 0.84910 0.93131 0.92594 1.83976 1.13455 1.32119 1.78830 1.21315 0.91683 0.82562 1.51085 0.89129 1.25270 0.95351 0.99352 0.96604 1.70037 1.06529 1.27781 1.45668 0.85722 0.78903 0.80314 0.78536 1.19933 1.20314 1.19229 1.19939 0.92727 0.96052 1.10643 1.68138 1.09440 1.30710 1.13756 0.89489 0.89413 0.89496 0.81069 0.82949 0.89194 0.89154 0.76683 0.88164 0.88271 0.87905 0.87466 0.85619 0.92129 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 10.32 36.01 0.37 -0.14 16 2 C 0.32 2.85 7.64 -157.19 -1.20 1.65 16 3 N -0.52 -4.61 10.33 -10.72 -0.11 -4.72 16 4 C 0.15 1.05 11.31 -17.20 -0.19 0.86 16 5 C -0.22 -1.51 9.84 -39.31 -0.39 -1.90 16 6 C 0.16 1.46 6.19 -82.25 -0.51 0.95 16 7 C 0.17 1.68 6.03 -5.20 -0.03 1.65 16 8 N -0.73 -7.50 5.55 -61.47 -0.34 -7.84 16 9 C 0.52 7.30 7.82 -10.99 -0.09 7.21 16 10 O -0.51 -9.79 16.03 5.55 0.09 -9.70 16 11 C -0.09 -1.20 5.83 -29.04 -0.17 -1.37 16 12 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 13 C -0.20 -3.57 9.70 -39.54 -0.38 -3.95 16 14 C -0.07 -1.45 10.04 -39.61 -0.40 -1.85 16 15 C -0.23 -5.24 9.17 -39.40 -0.36 -5.60 16 16 C 0.15 3.88 6.65 -39.11 -0.26 3.62 16 17 O -0.18 -5.28 9.76 0.03 0.00 -5.28 16 18 C -0.39 -11.16 9.49 30.89 0.29 -10.87 16 19 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.75 13.67 55.48 0.76 -24.99 16 22 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 26 C -0.17 -3.82 9.65 -39.40 -0.38 -4.20 16 27 N -0.51 -5.02 10.27 -6.99 -0.07 -5.09 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 32 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 0.86 8.06 -51.93 -0.42 0.45 16 35 H 0.40 3.13 8.46 -40.82 -0.35 2.78 16 36 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 37 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.10 1.59 8.06 -52.48 -0.42 1.16 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 370.72 15.07 5.59 5.59 Total: -1.00 -36.43 370.72 -8.47 -44.90 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.11 Total: 5.30 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -4.25 Total: -14.05 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.23 Total: -42.65 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.09 Total: -14.99 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.43 -8.47 -44.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119721544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.944 kcal (2) G-P(sol) polarization free energy of solvation -36.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds